LOCUS       XM_006538631            5432 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus paired box 7 (Pax7), transcript variant X3,
            mRNA.
ACCESSION   XM_006538631
VERSION     XM_006538631.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006538631.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5432
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..5432
                     /gene="Pax7"
                     /gene_synonym="Pax-7"
                     /note="paired box 7; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 4 ESTs, 57 long
                     SRA reads, 1 Protein, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:18509"
                     /db_xref="MGI:MGI:97491"
     CDS             196..1704
                     /gene="Pax7"
                     /gene_synonym="Pax-7"
                     /codon_start=1
                     /product="paired box protein Pax-7 isoform X3"
                     /protein_id="XP_006538694.1"
                     /db_xref="GeneID:18509"
                     /db_xref="MGI:MGI:97491"
                     /translation="MAALPGAVPRMMRPGPGQNYPRTGFPLEVSTPLGQGRVNQLGGV
                     FINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIG
                     GSKPRVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSISRVLRIK
                     FGKKEDDEEGDKKEEDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSR
                     TTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGAN
                     QLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQG
                     GLAAAAAAADTSSAYGARHSFSSYSDSFMNPGAPSNHMNPVSNGLSPQVMSILSNPSA
                     VPPQPQADFSISPLHGGLDSASSISASCSQRADSIKPGDSLPTSQSYCPPTYSTTGYS
                     VDPVAGYQYSQYGQTAVDYLAKNVSLSTQRRMKLGEHSAVLGLLPVETGQAY"
ORIGIN      
        1 ctcacccccc cccgcgccca gcttctggaa ggggcgcgtc tgcaaccggg tggggggggg
       61 tgcagaaggg agggggaaga ggctagtggg ggggggaggg aagaagagga gaggaggatc
      121 gcagcagggg tgaaaggaag agacgccaag aggtttatcc agccgactct ggattcgtct
      181 ccagcgtgcg caggaatggc ggcgctgccc ggcgcggtcc ccaggatgat gagacccggc
      241 ccggggcaga actacccgcg caccggcttc cccctggaag tgtccacccc tcttggccaa
      301 ggccgggtca atcagcttgg tggggtcttc atcaacggtc gacccctgcc gaaccacatc
      361 cgtcacaaga tagtggaaat ggcccaccat ggcatccggc cctgcgtcat ctcccgtcag
      421 ctccgtgttt cccatggttg tgtctccaag attctgtgcc gatatcagga gactgggtcc
      481 atccggcccg gggctatcgg aggcagcaag cccagagtgg cgactccgga tgtggagaaa
      541 aagattgagg agtataagag agagaacccc gggatgttca gctgggaaat ccgggaccgg
      601 ctgctgaagg acggtcactg cgaccgaagc acggtgccct cagtgagttc gattagccga
      661 gtgctcagaa tcaagttcgg gaagaaagag gacgacgagg aaggagacaa gaaagaagaa
      721 gatggcgaga agaaagccaa acacagcatc gatggcatcc tgggcgacaa agggaaccgt
      781 ctggatgagg gctcagatgt ggaatcagaa cccgacctcc ccctgaagcg caagcagcgc
      841 cgcagtcgga ccacgttcac agccgagcag ctggaggagc tggagaaggc cttcgagagg
      901 acccactacc cggacatcta cacccgggag gagctggcac agaggaccaa gctcacggag
      961 gcacgcgtcc aggtctggtt cagtaaccgg cgtgcccgct ggcgtaagca ggcaggagct
     1021 aaccagctgg ccgccttcaa ccaccttctg ccgggaggtt tcccacccac cggcatgccc
     1081 acgctgccac cctaccagct gccggactct acctacccca ccaccaccat ctcccaagat
     1141 ggaggcagca cagtacacag gccccagccc cttccgccat caaccatgca tcagggtggg
     1201 ctggctgcgg ccgctgcagc agcggacacc agctctgcct acggagcccg ccacagcttc
     1261 tccagctact ctgacagctt catgaaccct ggggctccct ccaaccacat gaaccctgtc
     1321 agcaatggcc tgtctcctca ggtcatgagc atccttagca acccgagtgc cgtgcctcca
     1381 cagccccagg ccgacttctc catctccccg ctgcatggag gcctggactc ggcttcctcc
     1441 atctcagcca gctgcagcca acgggccgac tccatcaagc caggagacag cttgcccacg
     1501 tcccagtctt actgcccacc cacctacagc accactggct acagtgtgga ccctgtggct
     1561 ggctaccagt acagccagta tggccaaact gctgttgatt acctggccaa aaacgtgagc
     1621 ctgtccacac agcgccgtat gaagcttggg gaacactccg ctgtgctggg acttcttcct
     1681 gtggaaacgg gacaagccta ctagggtccc tggggcaact tgccccatcc agtggcccag
     1741 ccaacccttc ccaagccctg agtctcctca cctcagtccc cttatccccc tggggttgca
     1801 ggagaccaag ggaaaaaaac cctttccctt cctacaggaa accctctgga gacggaaaac
     1861 cagtgtgcca tctacccatg cttagtgacc cagagtggcc ccttgccttc ccctctttct
     1921 tcagaggggt tcctaggcat cctgcagtga cctccagctc acatccacct tctctgtatc
     1981 gtggcctcgg tcctgtctca gtgcagagat tgaggctcaa tttgaaccaa gcacctagtt
     2041 atcagaagaa aatggtgcca aagacaaggc cctggagtcc ttgacctctg agtcgtgggt
     2101 gccctggcta tgggtgtagg tggagcccat gggtgtcctc agtcacagag ctgggagctc
     2161 tctctcgctc gcttggcatc aggactgcag cctctttcac tggacactga gatgagtccc
     2221 cagggtgttc ccaggggaga aagcaggtaa catcccagct ttacctagga atccagagga
     2281 ctttaggact gtccctatgc accctgcagg gcatcaggag accaggaagg gattctagca
     2341 gagggtaggg ggcacagagg cagagctgat tgcccatggg ctatcccaga atgcctggtc
     2401 ctgaatctag catcaggagg tgcaggattc ctaggctgca atctgacaga ggcttgccca
     2461 ctgtgtcagg cctgggcagc ccacagaacc tgtcactctc ctcaattggt aggagaagag
     2521 gtcttgaggt gacaggaggc agaaggcagg ctcagacagt cagagagcac caagctttca
     2581 agtccgcacc cctggggttc ggcataccat cttgctggca gctggaaacc tggttccctg
     2641 aaagggggcc tccatcctcc agaatgtaag gctcttgatg ccaccggatg cagagagcct
     2701 tctcgggcca gacaaaattg ctgctccacc ccagagaaga tgttccagcc ttcttggcat
     2761 cttagaggaa ggccatgtcg ctgtcctttt cagagtagca tatttttcag tgatggctgc
     2821 tcagtcagga ggcttctgtc gccttacaaa gcacagtgcg ctctgggcac tgtttctaag
     2881 ccaccccatc ccacccccac ccccgccacc ccggggacag aggaagatgc taaaagtccc
     2941 agcaaagagg acaaagcacc tttcttaagc actccagagt cttccttgta ccccgccctc
     3001 tcttagagct gggtcttttg agggaaacgg attgctgagc cctccccccc ccccaatcct
     3061 ctcctctgtg gagctgttta tcatcctcta tttatcaaaa tcgcatccat ctttaccctc
     3121 tccttcgcta tagcctactt ctggatcacc ctcatccagt gctggtaccc cacagcacta
     3181 aatccaggaa ccctgggctt gatcacctgt tgccacctgt acacatgaaa ccacctgctg
     3241 gcccggccca tgtctcctgc cctcagccag caagacattc ctagagagag gaactatggg
     3301 cttaaaagcc ccaactgact tccttttgcc tggggacctg aaccgacaag acaccaggga
     3361 cacttgtcta catgaacatg tgaccaatgt acaccgattt ctcatctcta gacctattat
     3421 ctgaagcctg tcccgggcca tgactagaat ggcttgtatc tgtggtttag agaagtctaa
     3481 taataactga gggcaaactg actctctggt agcatggagc accaggcgga tggagctcac
     3541 cagctctgtc caggtttcaa aggaggagac tgttgggctc ttcaaggtct ggacaagagg
     3601 aaagccacat tgcccccttg ggaacccagg ttctcctttt gaacttctca cagctgcaag
     3661 cacccctttc aaagaccaaa tgcatcctcc tccacattcc ttgctccctg gaggcctggc
     3721 tctggataca cctgagtctt cgttcaccta ctacacttta ggagcaggaa cttcaagcag
     3781 gtgacatcca cagggcccag tcccagccaa gggagcaaca ttccaacgct tggaccaatc
     3841 ataatgatct gcccgtgagg gtaaccgcaa ctagagacct gcttgggaga aaacaaaatg
     3901 acttctcatt ccatgccatg cctctgaatg ctcccccaag ctgccatctt ggtataaaat
     3961 gggacttgtg ttgtggggaa ccccttgacc ccaacaggtt ttcccaactg tctcatgctt
     4021 ttgtgaatct gtctgctttg atctgtaaaa ctcagccttg tttgggcagc ttgtaatttc
     4081 aacagtgagg cgacatcgat tagatgagag gcaccaggcc tctccgccgc cgtccctctg
     4141 tggccgtccc tctggggttg agcagaacct agaagaaggc cgatttccag tggccagact
     4201 ggaccagaaa cagcccccac cccaatccct gtaaatagag tcaatagcaa aataagaggg
     4261 gcgccctcca tgtcacctca agtagctact ggttcttctg tggaggcccc tctgaactca
     4321 ttgtctggta gttgaaaatg tgatgttgtg ctgtttgttt atagaacatt ggctttttat
     4381 atataaatct atatacttaa aaacaaaaac aaaaacaaaa aaaatggaaa gaaaccccca
     4441 cagtttgtgt cgtgctagtg ccggggacca tctgtaggga tctcattgtg tgtttggatt
     4501 atgtatgcca gcctttctcg ggttcctcct tctttttttt tttctttgtc atttccctac
     4561 tcccgatttg gtttttctct ctcgctctga aaatgaaaga gatggcttga agagccaagc
     4621 tcctactcct ttactttata ggcgaattaa ctttgccctt cttttagggg accaggaaca
     4681 agcacaggaa acagaaatta ggaagcaaga gggtaggaga gaagagtgag gggaggagct
     4741 agccagggag acaggagagc agggtggttt cgcagccaga tgatggctgt ggcccaggac
     4801 ggagcctgga ttagcatgct ccaccagagg ctggtattgt tttgcatgga aatggtagaa
     4861 tgttctcaga catggagcta agccttgctg agggactcca cagtagccaa ctaagaagac
     4921 tcctttaaga ggctccaatt ctccccagga tcttggaaat gtctctccct gcaggatgct
     4981 tctcttgggt acacaagcat cctcgccttc tataaaagca ccaagccaag accaaatgga
     5041 gggtatgtgg gctgccgtgt tgaaatgtgt caagatacct gtgcatttaa tgtctcttct
     5101 gtctgtacgg acatgggcag ccccctgctg ggaaaaggcc accctgtgct gacgaacatt
     5161 ccttcttccc agtgactgca acattgttgc ttcagtgttt ggctcagcca tttctcctcc
     5221 acgcaaagtg agtgtgtgtg catgaggggt gtgagtggga tgtgtgcgtg tgggcgggcg
     5281 tctaaatata accgcaccat aatttattca gctatatgga gtagtagact agaaagacaa
     5341 actggtattt gctttaacta cctgctgctt gtaagcgctg cctctgtaac tcaggcgtaa
     5401 ctgttataca ttaaaagaaa ttaaaaacat ca
//
