LOCUS       XM_006502707            3688 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PATJ, crumbs cell polarity complex
            component (Patj), transcript variant X8, mRNA.
ACCESSION   XM_006502707
VERSION     XM_006502707.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006502707.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..3688
                     /gene="Patj"
                     /gene_synonym="Cipp; Inadl"
                     /note="PATJ, crumbs cell polarity complex component;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 27 ESTs, 167 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:12695"
                     /db_xref="MGI:MGI:1277960"
     CDS             195..2021
                     /gene="Patj"
                     /gene_synonym="Cipp; Inadl"
                     /codon_start=1
                     /product="inaD-like protein isoform X5"
                     /protein_id="XP_006502770.1"
                     /db_xref="GeneID:12695"
                     /db_xref="MGI:MGI:1277960"
                     /translation="MEMEKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSI
                     FVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPTRVKLVFIRNE
                     DAVSQMAVAPFPELSHSPSPVEDLGGTELVSSEEESSVDAKHLPEPESSKPEDLSQVV
                     DDNMVAEQQKESESPDSAACQIKQQTYSTQVSSSSQDSPSSPAPLCQSAHADVTGSGN
                     FQAPLPVDPAPLSVDPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLDAIVIHEV
                     YEEGAAARDGRLWAGDQILEVNGVDLRSSSHEEAITALRQTPQKVRLVVYRDEAQYRD
                     EENLEVFLVDLQKKTGRGLGLSIVGKRSGSGVFISDIVKGGAADLDGRLIRGDQILSV
                     NGEDMRHASQETVATILKCVQGLVQLEIGRLRAGSWAASRKTSQNSQGDQHSAHSSCR
                     PSFAPVITSLQNLVGTKRSSDPPQKCTEEEPRTVEIIRELSDALGISIAGGKGSPLGD
                     IPIFIAMIQANGVAARTQKLKVGDRIVSINGQPLDGLSHTDAVNLLKNAFGRIILQVV
                     ADTNISAIATQLEIMSAGSQLGSPTADRHPEDTEEQMQRTAD"
ORIGIN      
        1 attcaaggta gtaagactga attgggaaaa ttacagcaat ggaggcatgc catgagctga
       61 tgggtgtgct tcgctgtgtg aggctcagag cagcaccagc cagacctccc tctcagcgcc
      121 agcaaatgtc tctcccttca cggaaaaatt agtgcgctta gggaagaggt agcaagtctc
      181 ctgatgttag ctgcatggaa atggaaaaga tcaggcaaag atatgcagac ctgccgggag
      241 aactacacat tatcgaactg gaaaaggaca agaatggact ggggctcagt ctcgctggca
      301 ataaggacag gtcacggatg agcatcttcg tggtggggat taatccggag ggacctgctg
      361 ctgcagacgg acggatgcgg attggagacg agctgctaga gataaacaat cagattcttt
      421 atggaagaag tcatcagaac gcatctgcca ttattaagac tgccccaacc agggtcaaac
      481 tggttttcat tagaaacgaa gatgcagtca gtcagatggc cgtcgctccc ttcccggagc
      541 tatcacattc tccatcgcct gttgaggatc tgggtggcac tgaacttgtc agtagtgaag
      601 aggagagcag tgtggatgct aaacacctgc ctgaaccaga aagctccaaa ccggaagacc
      661 tgtcccaggt ggttgatgac aacatggtgg cagagcagca gaaggaatcg gagtcacctg
      721 acagtgctgc ctgccagata aaacagcaga catattcaac acaagtctcc tccagctcgc
      781 aagatagccc atcgtcaccg gctccattgt gtcagtcagc acatgcagac gtcacaggct
      841 ctggtaactt ccaggctcct ctcccagtgg accctgctcc actctcggtg gaccctgcaa
      901 catgtcccat cgtccctggc caggaaatga tcatagaaat atccaaggga cgctccgggc
      961 tcgggctcag cattgttgga ggaaaagaca cacctttgga tgctatagtt atccatgaag
     1021 tctatgaaga aggtgcagct gccagagatg gaagattatg ggctggagac cagatattag
     1081 aggttaatgg ggttgatctg cggagctcca gccatgaaga agccatcaca gccctgaggc
     1141 agacccccca gaaggtgcgg ctggtggtat acagagatga agcacagtac agagacgagg
     1201 agaacttgga ggtgttcctt gtggacctgc agaagaagac tggccgagga ctaggcctga
     1261 gcattgttgg gaaacggagt ggaagtggag tgtttatttc tgacattgtg aaaggcgggg
     1321 ccgcagacct cgatgggagg ttaattcgag gagaccagat cttgtctgtg aatggagagg
     1381 acatgagaca cgcctcacag gagacagtgg ccaccatcct gaagtgtgtc cagggccttg
     1441 tccagctgga gattgggaga ctccgcgccg gttcctgggc cgcctctcgg aagacctcgc
     1501 agaacagcca gggggatcag cacagtgcgc acagcagctg tcggccttcc tttgccccag
     1561 tcatcaccag cctacaaaac ctggttggca caaaaagatc ttcagatcct ccacagaaat
     1621 gcacagagga ggaaccaagg actgtagaga taatcagaga gctcagcgat gcccttggga
     1681 tcagtatcgc tggaggaaaa gggagtcctt taggagatat ccccatattt attgccatga
     1741 ttcaggccaa cggagtggcc gcacggaccc agaagcttaa ggttggagat cggattgtga
     1801 gcattaatgg acaacctctg gatggactgt ctcacacaga tgccgttaat ctactgaaga
     1861 atgccttcgg gcgcattatc ctgcaggttg tggcagatac caacataagt gccatagcga
     1921 cccagctgga aatcatgtct gcaggctccc agcttggctc tccgactgct gaccgacatc
     1981 cggaagacac agaggagcag atgcagagga cggctgatta aagtgaagtg accagatctt
     2041 agctgaaatg gcgagaccct ggaaggcatt accatgagca agctgcctcc attctaaagc
     2101 agcagagagg gactgtggcc ttgactgtgc tgccgtgagc tgcgggtcct gatcatgaca
     2161 cactttttca cgagactgct gcagaattct gcggcttctg gttgggatga acagttgcct
     2221 cggctaaagc ccagcatcat cactggctct gactctgttt gcagaaacag agctgctgtc
     2281 tctgcttcct gctcatatcc ctcatcccca cagaggctta gctgcaagct cctgtggtct
     2341 catctaatga gtagaaacaa aggtttagct tgtcatctta actcgtgatt tacttatgct
     2401 aatttgcctc ttcaaataaa ccagaaaaca ttagcagtgt aattaacttc ctcgcaatga
     2461 actattcata ctctgccgct gggaattact gcgttctgtt ctgtgtgact cagtcaagta
     2521 gacctcgcat ccctgcctct agattgatct gctgttagtc cttggtgatt cggaggagtc
     2581 catttacaga ctttgtaatc tacttggagt cctaacaggc gttgattctg agtttgacaa
     2641 gcgcacactg ctcagcaagt atgccttggt ctccacagga acaagtaacc ctcgagtttg
     2701 agttccaccc atgctagctc acattactgg gacgctaact gggagtggtg ggcatctcag
     2761 cagatcggaa tcacccgttc cctacccccc tagactgcag gtgaggaggt ggaaacccta
     2821 gaccacactg tagactgtag agatgagcaa gttcgatcgg cctcagcctt atcagaagca
     2881 agttacaagt ttggttagcc tttctctcac cttcgtacca acctgcacag tggctcagcc
     2941 tgcagcggct gtgtgcagct cgggaactta aagcaaatga cctgggaatc agacacagaa
     3001 gtgcttagct tgagtttccc agcctctacc tcctattggc tgaagttctg tagctaagaa
     3061 agcagctgtg gctgagagca tcaagagtcc tcagagcatg caatgggctg ggaagggaga
     3121 tggatggtca tcaccaagca ccgtagagtc gtctgttgaa agcaaaggaa actaccacga
     3181 agggtcagca atagacatag cttagcattc taggactata actcgatgca gcagaatgtt
     3241 cagtaattac ccagaattta atgggcccta atttaaaatg ttatttaatt agtgaggatt
     3301 ttaactgata ttccttttga gtagatgcaa tcccaaagtg cattaactct tgtggctatt
     3361 ctaaagtgca gaatgcctca attttatgtt gatggtgtat tccaatgact ggtattaagc
     3421 tttttgagat tctgtagggt ttttagaatt tataatgtat ccaaaataca tggttttggt
     3481 aggctctcat ctcccagttc atgagaagcc accaacctca gtgtcctctg tgaatggtac
     3541 ccaaaagaag gtctcaagca gcaaaaacca aatgaagccc aaatgaaagt gcaccttaga
     3601 agacaaagat aacagcatta atgctctcca agtgcgatct tgcttacttt tgatggaatg
     3661 gcggcgttaa atacacattt tgaaatga
//
