LOCUS       XM_006502703            7436 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PATJ, crumbs cell polarity complex
            component (Patj), transcript variant X5, mRNA.
ACCESSION   XM_006502703
VERSION     XM_006502703.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006502703.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7436
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..7436
                     /gene="Patj"
                     /gene_synonym="Cipp; Inadl"
                     /note="PATJ, crumbs cell polarity complex component;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 63 ESTs, 178 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 12 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:12695"
                     /db_xref="MGI:MGI:1277960"
     CDS             292..5769
                     /gene="Patj"
                     /gene_synonym="Cipp; Inadl"
                     /codon_start=1
                     /product="inaD-like protein isoform X2"
                     /protein_id="XP_006502766.1"
                     /db_xref="GeneID:12695"
                     /db_xref="MGI:MGI:1277960"
                     /translation="MQVLQVLDRLRGKLQEKGDTTQNEKLSAFYETLKSPLFNQILTL
                     QQSIKQLKGQLSHIPSDCSANFDFSRKGLLVFTDGSITNGNAQRPCSNVTASELLPWT
                     QKSASEDFNSVIQQMAQGRHVEYIDIERPSTGGLGFSVVALRSQSLGLIDIFVKEVHP
                     GSVADRDHRLKENDQILAINDTPLDQNISHQQAIALLQQATGSLRLVVAREVGHTQGR
                     ASTSSADTTLPETVCWGHTEEVELINDGSGLGFGIVGGKSSGVVVRTIVPGGLADRDG
                     RLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPVGEIAVTPPTPVSLP
                     VALPAVATRTLDSDRSPFETYSVELVKKDGQSLGIRIVGYVGTAHPGEASGIYVKSII
                     PGSAAYHNGQIQVNDKIVAVDGVNIQGFANQDVVEVLRNAGQVVHLTLVRRKTSLSAS
                     PFEHSSSRETVAEPPKVPERAGSPKPEANLSVEAEEIGERLDNLKNNTVQALEKPDVY
                     PEKVPGSPENELKSRWENLLGPDYEVMVATLDAQIADDEELQKYSKLLPIHTLRLGME
                     VDSFDGHHYISSVAPGGPVDTLNLLQPEDELLEVNGMQLYGKSRREAVSFLKEVPPPF
                     TLVCCRRLFDDEASVDEPRTMEPALLEAEVDHSVDVNIEDDDDGELALWSPEVKTVEL
                     VKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGELLPGDRLVSVNEFSLDN
                     ATLAEAVEVLKAVPPGVVHLGICKPLVEDEKEERFSLHSNNNGDSSEPADAVHEIHSS
                     LILEAPQGFRDEPYLEELVDEPFLDLGKSLQFQQKDVDSSSEAWEMHEFLSPPLDGRG
                     EEREMLVDEEYELYQDHLRAMESNPPPPHIREAAPASPVLELQAGTQWLHANLSGGER
                     LECHDAESMMSAYPQEMQQYSYSTADMMEETFGLDSRAPIPSSEGNGQHGRFDDMGHL
                     HSLTSSSLDLGMMIPSDLQGPGVLVDLPAVAQRREQEDLPLYRLPSARVVTKPSSHMG
                     LVSSRHANAACELPEREEGEGEETPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIK
                     RLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHAEAVEAIKSAG
                     NPVVFVVQSLSSTPRVIPTVNNKGKTPAPNQDQNTQERKAKRHGTAPPPMKLPPPYRA
                     PSADMEGSEEDCALTDKKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIF
                     VVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPTRVKLVFIRNED
                     AVSQMAVAPFPELSHSPSPVEDLGGTELVSSEEESSVDAKHLPEPESSKPEDLSQVVD
                     DNMVAEQQKESESPDSAACQIKQQTYSTQVSSSSQDSPSSPAPLCQSAHADVTGSGNF
                     QAPLPVDPAPLSVDPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLDAIVIHEVY
                     EEGAAARDGRLWAGDQILEVNGVDLRSSSHEEAITALRQTPQKVRLVVYRDEAQYRDE
                     ENLEVFLVDLQKKTGRGLGLSIVGKRSGSGVFISDIVKGGAADLDGRLIRGDQILSVN
                     GEDMRHASQETVATILKCVQGLVQLEIGRLRAGSWAASRKTSQNSQGDQHSAHSSCRP
                     SFAPVITSLQNLVGTKRSSDPPQKCTEEEPRTVEIIRELSDALGISIAGGKGSPLGDI
                     PIFIAMIQANGVAARTQKLKVGDRIVSINGQPLDGLSHTDAVNLLKNAFGRIILQVVA
                     DTNISAIATQLEIMSAGSQLGSPTADRHPEDTEEQMQRTAD"
ORIGIN      
        1 gggcctcggg ctaggggcta agtggacttg tcgtttgttt ggggtctcgg ttttgggtca
       61 gcgctggtgg cccacaactc tgtacctgga cgcaaaggcc tccggcctcc tctccagggc
      121 tggtcgcccc actcgtcccc cggacccttc acaggcgcgc agacgcccgg gggctcgagc
      181 cccgttcgcc ccgccccgcc cagcctccgg cgaggtggag agcggcccag gtgaggaggc
      241 ggccgcactt ccgtccaggt gagggcagca gctgtacttc cgccagagaa gatgcaggtc
      301 ctgcaggtcc tggatcgcct tcgagggaag ctgcaggaga agggagacac gacgcagaac
      361 gagaagctgt ctgcgttcta cgagacgctg aagagccctc tcttcaacca gatccttaca
      421 ctgcagcagt ccatcaagca gctgaaggga cagcttagcc acatcccctc agattgctca
      481 gccaactttg acttttctcg caagggcttg ctagtgttca cggatggttc cattacaaac
      541 gggaatgccc aaaggccttg tagtaatgtg actgcatctg aactgttgcc ctggactcaa
      601 aagtcagcaa gtgaagactt taactcagtc attcagcaga tggctcaggg ccggcacgtt
      661 gagtatatag atattgaacg tccttcaact ggaggccttg gattcagtgt ggtggctctg
      721 agaagccaaa gcctgggatt aattgatatc tttgtgaagg aagtccatcc cgggagtgta
      781 gcagacaggg atcacagatt gaaggaaaat gaccagattt tggccattaa tgacacccca
      841 ttggatcaga atatttccca tcagcaggcg attgcattac tacaacaagc cactggatct
      901 ctgcggctgg ttgtggccag ggaagtgggc cacacacagg gccgagcatc caccagctca
      961 gctgatacaa ctctgccaga aacggtgtgt tggggccaca cggaagaggt tgagctcatt
     1021 aacgatggct ctggattagg ttttgggata gttggaggga aatccagcgg cgtggtcgtg
     1081 aggactattg ttcctggagg actggcagac cgagatggaa gactgcagac aggggatcac
     1141 atcttgaaga ttggtggtac aaatgttcaa gggatgacca gtgaacaagt tgctcaagtg
     1201 ctaaggaact gtgggaattc agtgaggatg ctggtggcca gagaccctgt tggtgaaatt
     1261 gcagtaacac ctcctacccc tgtatcctta cctgttgccc tacctgctgt agccacaagg
     1321 acccttgatt ctgacaggtc tccttttgaa acttacagtg ttgaacttgt taagaaagat
     1381 gggcagagtc ttgggattag aattgttggc tatgttggaa cagctcatcc aggggaagct
     1441 tccgggattt atgtgaaaag tataattcca ggcagcgctg cataccacaa tggccaaatt
     1501 caagtgaatg ataaaatcgt ggctgtggat ggtgtgaata ttcaaggttt tgctaatcag
     1561 gatgttgtcg aagtattgcg gaatgctggg caggtggtac acctgaccct tgttcgaagg
     1621 aaaacatctt tatctgcttc tccgtttgag cactcttcaa gcagagaaac tgttgcagaa
     1681 ccacctaaag taccagaacg agcaggatcc ccgaaaccag aagctaattt gagtgtggaa
     1741 gcagaggaaa ttggagaaag actggataat ctaaaaaaca acactgtaca agccttagaa
     1801 aaaccagatg tatatccaga gaaagttcca ggctctccag aaaatgagct gaaatccaga
     1861 tgggaaaacc tactgggccc agattatgaa gtaatggtag ccactttgga tgctcagatt
     1921 gcagacgatg aggagctaca gaaatactcg aagctgctgc ctatccacac gctcaggctt
     1981 gggatggaag tcgactcctt cgatgggcac cactatatct cctcagttgc tcctgggggt
     2041 cctgtggata ccctgaacct ccttcagcca gaggatgaac ttcttgaggt caacggcatg
     2101 cagctttatg ggaagtctcg ccgagaagca gtctccttcc ttaaagaagt gcccccacca
     2161 tttaccttgg tctgctgccg ccggctgttt gatgatgagg cctcagttga tgagccaaga
     2221 accatggagc ctgctcttct tgaggccgag gttgaccaca gtgtagatgt caacattgaa
     2281 gatgatgatg atggagaatt agccctgtgg tctcctgaag tcaagactgt ggagctggtg
     2341 aaagactgca aaggcttagg attcagtatt ttggattatc aggaccccct ggatcccacg
     2401 cggtcagtga ttgtgattcg ctccttggtg gcagatggtg tagcggaaag aagtggagaa
     2461 cttttacctg gagatcgcct agtctccgtc aatgagttct ccttggacaa tgccactctt
     2521 gctgaggctg tggaagtgtt gaaggctgta cccccaggtg tggtgcatct tggcatctgt
     2581 aagcctttgg tggaagatga gaaggaagag cgttttagtt tacattcaaa caacaatggt
     2641 gacagcagcg agcctgcaga cgctgttcat gagatccact catctttaat ccttgaggca
     2701 ccccagggat ttagagatga gccatatctt gaagaactcg tggatgaacc ttttctagat
     2761 ttgggaaagt ctttgcagtt ccaacaaaaa gacgtggaca gcagctcgga agcttgggaa
     2821 atgcatgagt tcctgagtcc tccgctggac ggcaggggtg aggagagaga gatgcttgtc
     2881 gatgaggagt atgaacttta tcaagatcac ctccgggcca tggagtcaaa cccaccacca
     2941 ccacacattc gggaggccgc tcctgcatct cccgtgctgg aactccaggc tggtacacag
     3001 tggctgcatg ctaacctctc aggaggcgaa aggctggagt gtcacgatgc agagtccatg
     3061 atgagtgcct atccccagga gatgcagcag tatagctaca gcactgcaga catgatggaa
     3121 gaaacgtttg gccttgattc ccgggccccc ataccgtcct ctgaaggaaa tggtcaacac
     3181 ggcagatttg atgacatggg acaccttcat tcactaacga gcagcagcct ggatttaggc
     3241 atgatgattc caagtgatct gcaaggtcct ggcgtgcttg tcgatcttcc agctgttgct
     3301 caaagaagag aacaggaaga tttgcctctg taccgactcc ccagcgcccg cgttgtcacc
     3361 aagccgtcat cacacatggg actggtgtct tcacggcatg caaatgctgc atgtgaatta
     3421 ccggagagag aggaaggtga aggagaggag acaccgaact tcagccactg gggtccacca
     3481 agaatagttg aaatttttag agaacctaat gtgtctcttg gcatcagcat cgttggtgga
     3541 caaacagtta taaaacgcct caagaatgga gaggaactca aggggatatt catcaaacaa
     3601 gtgttagagg acagtcctgc cgggaagacc aatgcgctga aaaccggaga taaaattctt
     3661 gaggtgtctg gtgtagacct gcagaatgcc tcccatgcag aagccgtgga ggcaatcaag
     3721 agtgcgggaa accctgtggt attcgtggta cagagcctgt catccacccc aagggtcatc
     3781 ccaactgtga ataacaaagg caaaacacct gccccgaacc aggatcaaaa cactcaagaa
     3841 aggaaagcta agaggcacgg aacagctcca cctccaatga agctgccccc gccctacaga
     3901 gctccatctg cagacatgga gggaagtgaa gaagactgtg cgctgaccga caaaaagatc
     3961 aggcaaagat atgcagacct gccgggagaa ctacacatta tcgaactgga aaaggacaag
     4021 aatggactgg ggctcagtct cgctggcaat aaggacaggt cacggatgag catcttcgtg
     4081 gtggggatta atccggaggg acctgctgct gcagacggac ggatgcggat tggagacgag
     4141 ctgctagaga taaacaatca gattctttat ggaagaagtc atcagaacgc atctgccatt
     4201 attaagactg ccccaaccag ggtcaaactg gttttcatta gaaacgaaga tgcagtcagt
     4261 cagatggccg tcgctccctt cccggagcta tcacattctc catcgcctgt tgaggatctg
     4321 ggtggcactg aacttgtcag tagtgaagag gagagcagtg tggatgctaa acacctgcct
     4381 gaaccagaaa gctccaaacc ggaagacctg tcccaggtgg ttgatgacaa catggtggca
     4441 gagcagcaga aggaatcgga gtcacctgac agtgctgcct gccagataaa acagcagaca
     4501 tattcaacac aagtctcctc cagctcgcaa gatagcccat cgtcaccggc tccattgtgt
     4561 cagtcagcac atgcagacgt cacaggctct ggtaacttcc aggctcctct cccagtggac
     4621 cctgctccac tctcggtgga ccctgcaaca tgtcccatcg tccctggcca ggaaatgatc
     4681 atagaaatat ccaagggacg ctccgggctc gggctcagca ttgttggagg aaaagacaca
     4741 cctttggatg ctatagttat ccatgaagtc tatgaagaag gtgcagctgc cagagatgga
     4801 agattatggg ctggagacca gatattagag gttaatgggg ttgatctgcg gagctccagc
     4861 catgaagaag ccatcacagc cctgaggcag accccccaga aggtgcggct ggtggtatac
     4921 agagatgaag cacagtacag agacgaggag aacttggagg tgttccttgt ggacctgcag
     4981 aagaagactg gccgaggact aggcctgagc attgttggga aacggagtgg aagtggagtg
     5041 tttatttctg acattgtgaa aggcggggcc gcagacctcg atgggaggtt aattcgagga
     5101 gaccagatct tgtctgtgaa tggagaggac atgagacacg cctcacagga gacagtggcc
     5161 accatcctga agtgtgtcca gggccttgtc cagctggaga ttgggagact ccgcgccggt
     5221 tcctgggccg cctctcggaa gacctcgcag aacagccagg gggatcagca cagtgcgcac
     5281 agcagctgtc ggccttcctt tgccccagtc atcaccagcc tacaaaacct ggttggcaca
     5341 aaaagatctt cagatcctcc acagaaatgc acagaggagg aaccaaggac tgtagagata
     5401 atcagagagc tcagcgatgc ccttgggatc agtatcgctg gaggaaaagg gagtccttta
     5461 ggagatatcc ccatatttat tgccatgatt caggccaacg gagtggccgc acggacccag
     5521 aagcttaagg ttggagatcg gattgtgagc attaatggac aacctctgga tggactgtct
     5581 cacacagatg ccgttaatct actgaagaat gccttcgggc gcattatcct gcaggttgtg
     5641 gcagatacca acataagtgc catagcgacc cagctggaaa tcatgtctgc aggctcccag
     5701 cttggctctc cgactgctga ccgacatccg gaagacacag aggagcagat gcagaggacg
     5761 gctgattaaa gtgaagtgac cagatcttag ctgaaatggc gagaccctgg aaggcattac
     5821 catgagcaag ctgcctccat tctaaagcag cagagaggga ctgtggcctt gactgtgctg
     5881 ccgtgagctg cgggtcctga tcatgacaca ctttttcacg agactgctgc agaattctgc
     5941 ggcttctggt tgggatgaac agttgcctcg gctaaagccc agcatcatca ctggctctga
     6001 ctctgtttgc agaaacagag ctgctgtctc tgcttcctgc tcatatccct catccccaca
     6061 gaggcttagc tgcaagctcc tgtggtctca tctaatgagt agaaacaaag gtttagcttg
     6121 tcatcttaac tcgtgattta cttatgctaa tttgcctctt caaataaacc agaaaacatt
     6181 agcagtgtaa ttaacttcct cgcaatgaac tattcatact ctgccgctgg gaattactgc
     6241 gttctgttct gtgtgactca gtcaagtaga cctcgcatcc ctgcctctag attgatctgc
     6301 tgttagtcct tggtgattcg gaggagtcca tttacagact ttgtaatcta cttggagtcc
     6361 taacaggcgt tgattctgag tttgacaagc gcacactgct cagcaagtat gccttggtct
     6421 ccacaggaac aagtaaccct cgagtttgag ttccacccat gctagctcac attactggga
     6481 cgctaactgg gagtggtggg catctcagca gatcggaatc acccgttccc taccccccta
     6541 gactgcaggt gaggaggtgg aaaccctaga ccacactgta gactgtagag atgagcaagt
     6601 tcgatcggcc tcagccttat cagaagcaag ttacaagttt ggttagcctt tctctcacct
     6661 tcgtaccaac ctgcacagtg gctcagcctg cagcggctgt gtgcagctcg ggaacttaaa
     6721 gcaaatgacc tgggaatcag acacagaagt gcttagcttg agtttcccag cctctacctc
     6781 ctattggctg aagttctgta gctaagaaag cagctgtggc tgagagcatc aagagtcctc
     6841 agagcatgca atgggctggg aagggagatg gatggtcatc accaagcacc gtagagtcgt
     6901 ctgttgaaag caaaggaaac taccacgaag ggtcagcaat agacatagct tagcattcta
     6961 ggactataac tcgatgcagc agaatgttca gtaattaccc agaatttaat gggccctaat
     7021 ttaaaatgtt atttaattag tgaggatttt aactgatatt ccttttgagt agatgcaatc
     7081 ccaaagtgca ttaactcttg tggctattct aaagtgcaga atgcctcaat tttatgttga
     7141 tggtgtattc caatgactgg tattaagctt tttgagattc tgtagggttt ttagaattta
     7201 taatgtatcc aaaatacatg gttttggtag gctctcatct cccagttcat gagaagccac
     7261 caacctcagt gtcctctgtg aatggtaccc aaaagaaggt ctcaagcagc aaaaaccaaa
     7321 tgaagcccaa atgaaagtgc accttagaag acaaagataa cagcattaat gctctccaag
     7381 tgcgatcttg cttacttttg atggaatggc ggcgttaaat acacattttg aaatga
//
