LOCUS       XM_006502702            7495 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PATJ, crumbs cell polarity complex
            component (Patj), transcript variant X4, mRNA.
ACCESSION   XM_006502702
VERSION     XM_006502702.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006502702.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7495
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..7495
                     /gene="Patj"
                     /gene_synonym="Cipp; Inadl"
                     /note="PATJ, crumbs cell polarity complex component;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 63 ESTs, 179 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 19 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:12695"
                     /db_xref="MGI:MGI:1277960"
     CDS             351..5828
                     /gene="Patj"
                     /gene_synonym="Cipp; Inadl"
                     /codon_start=1
                     /product="inaD-like protein isoform X2"
                     /protein_id="XP_006502765.1"
                     /db_xref="GeneID:12695"
                     /db_xref="MGI:MGI:1277960"
                     /translation="MQVLQVLDRLRGKLQEKGDTTQNEKLSAFYETLKSPLFNQILTL
                     QQSIKQLKGQLSHIPSDCSANFDFSRKGLLVFTDGSITNGNAQRPCSNVTASELLPWT
                     QKSASEDFNSVIQQMAQGRHVEYIDIERPSTGGLGFSVVALRSQSLGLIDIFVKEVHP
                     GSVADRDHRLKENDQILAINDTPLDQNISHQQAIALLQQATGSLRLVVAREVGHTQGR
                     ASTSSADTTLPETVCWGHTEEVELINDGSGLGFGIVGGKSSGVVVRTIVPGGLADRDG
                     RLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPVGEIAVTPPTPVSLP
                     VALPAVATRTLDSDRSPFETYSVELVKKDGQSLGIRIVGYVGTAHPGEASGIYVKSII
                     PGSAAYHNGQIQVNDKIVAVDGVNIQGFANQDVVEVLRNAGQVVHLTLVRRKTSLSAS
                     PFEHSSSRETVAEPPKVPERAGSPKPEANLSVEAEEIGERLDNLKNNTVQALEKPDVY
                     PEKVPGSPENELKSRWENLLGPDYEVMVATLDAQIADDEELQKYSKLLPIHTLRLGME
                     VDSFDGHHYISSVAPGGPVDTLNLLQPEDELLEVNGMQLYGKSRREAVSFLKEVPPPF
                     TLVCCRRLFDDEASVDEPRTMEPALLEAEVDHSVDVNIEDDDDGELALWSPEVKTVEL
                     VKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGELLPGDRLVSVNEFSLDN
                     ATLAEAVEVLKAVPPGVVHLGICKPLVEDEKEERFSLHSNNNGDSSEPADAVHEIHSS
                     LILEAPQGFRDEPYLEELVDEPFLDLGKSLQFQQKDVDSSSEAWEMHEFLSPPLDGRG
                     EEREMLVDEEYELYQDHLRAMESNPPPPHIREAAPASPVLELQAGTQWLHANLSGGER
                     LECHDAESMMSAYPQEMQQYSYSTADMMEETFGLDSRAPIPSSEGNGQHGRFDDMGHL
                     HSLTSSSLDLGMMIPSDLQGPGVLVDLPAVAQRREQEDLPLYRLPSARVVTKPSSHMG
                     LVSSRHANAACELPEREEGEGEETPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIK
                     RLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHAEAVEAIKSAG
                     NPVVFVVQSLSSTPRVIPTVNNKGKTPAPNQDQNTQERKAKRHGTAPPPMKLPPPYRA
                     PSADMEGSEEDCALTDKKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIF
                     VVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPTRVKLVFIRNED
                     AVSQMAVAPFPELSHSPSPVEDLGGTELVSSEEESSVDAKHLPEPESSKPEDLSQVVD
                     DNMVAEQQKESESPDSAACQIKQQTYSTQVSSSSQDSPSSPAPLCQSAHADVTGSGNF
                     QAPLPVDPAPLSVDPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLDAIVIHEVY
                     EEGAAARDGRLWAGDQILEVNGVDLRSSSHEEAITALRQTPQKVRLVVYRDEAQYRDE
                     ENLEVFLVDLQKKTGRGLGLSIVGKRSGSGVFISDIVKGGAADLDGRLIRGDQILSVN
                     GEDMRHASQETVATILKCVQGLVQLEIGRLRAGSWAASRKTSQNSQGDQHSAHSSCRP
                     SFAPVITSLQNLVGTKRSSDPPQKCTEEEPRTVEIIRELSDALGISIAGGKGSPLGDI
                     PIFIAMIQANGVAARTQKLKVGDRIVSINGQPLDGLSHTDAVNLLKNAFGRIILQVVA
                     DTNISAIATQLEIMSAGSQLGSPTADRHPEDTEEQMQRTAD"
ORIGIN      
        1 gggcctcggg ctaggggcta agtggacttg tcgtttgttt ggggtctcgg ttttgggtca
       61 gcgctggtgg cccacaactc tgtacctgga cgcaaaggcc tccggcctcc tctccagggc
      121 tggtcgcccc actcgtcccc cggacccttc acaggcgcgc agacgcccgg gggctcgagc
      181 cccgttcgcc ccgccccgcc cagcctccgg cgaggtggag agcggcccag gtgaggaggc
      241 ggccgcactt ccgtccaggt gagggcagca gctgtacttc cgccaggtga ggaggccgtc
      301 cgtgcccgca gccccggggc tcccaccccg ccgtcgcccg atcagagaag atgcaggtcc
      361 tgcaggtcct ggatcgcctt cgagggaagc tgcaggagaa gggagacacg acgcagaacg
      421 agaagctgtc tgcgttctac gagacgctga agagccctct cttcaaccag atccttacac
      481 tgcagcagtc catcaagcag ctgaagggac agcttagcca catcccctca gattgctcag
      541 ccaactttga cttttctcgc aagggcttgc tagtgttcac ggatggttcc attacaaacg
      601 ggaatgccca aaggccttgt agtaatgtga ctgcatctga actgttgccc tggactcaaa
      661 agtcagcaag tgaagacttt aactcagtca ttcagcagat ggctcagggc cggcacgttg
      721 agtatataga tattgaacgt ccttcaactg gaggccttgg attcagtgtg gtggctctga
      781 gaagccaaag cctgggatta attgatatct ttgtgaagga agtccatccc gggagtgtag
      841 cagacaggga tcacagattg aaggaaaatg accagatttt ggccattaat gacaccccat
      901 tggatcagaa tatttcccat cagcaggcga ttgcattact acaacaagcc actggatctc
      961 tgcggctggt tgtggccagg gaagtgggcc acacacaggg ccgagcatcc accagctcag
     1021 ctgatacaac tctgccagaa acggtgtgtt ggggccacac ggaagaggtt gagctcatta
     1081 acgatggctc tggattaggt tttgggatag ttggagggaa atccagcggc gtggtcgtga
     1141 ggactattgt tcctggagga ctggcagacc gagatggaag actgcagaca ggggatcaca
     1201 tcttgaagat tggtggtaca aatgttcaag ggatgaccag tgaacaagtt gctcaagtgc
     1261 taaggaactg tgggaattca gtgaggatgc tggtggccag agaccctgtt ggtgaaattg
     1321 cagtaacacc tcctacccct gtatccttac ctgttgccct acctgctgta gccacaagga
     1381 cccttgattc tgacaggtct ccttttgaaa cttacagtgt tgaacttgtt aagaaagatg
     1441 ggcagagtct tgggattaga attgttggct atgttggaac agctcatcca ggggaagctt
     1501 ccgggattta tgtgaaaagt ataattccag gcagcgctgc ataccacaat ggccaaattc
     1561 aagtgaatga taaaatcgtg gctgtggatg gtgtgaatat tcaaggtttt gctaatcagg
     1621 atgttgtcga agtattgcgg aatgctgggc aggtggtaca cctgaccctt gttcgaagga
     1681 aaacatcttt atctgcttct ccgtttgagc actcttcaag cagagaaact gttgcagaac
     1741 cacctaaagt accagaacga gcaggatccc cgaaaccaga agctaatttg agtgtggaag
     1801 cagaggaaat tggagaaaga ctggataatc taaaaaacaa cactgtacaa gccttagaaa
     1861 aaccagatgt atatccagag aaagttccag gctctccaga aaatgagctg aaatccagat
     1921 gggaaaacct actgggccca gattatgaag taatggtagc cactttggat gctcagattg
     1981 cagacgatga ggagctacag aaatactcga agctgctgcc tatccacacg ctcaggcttg
     2041 ggatggaagt cgactccttc gatgggcacc actatatctc ctcagttgct cctgggggtc
     2101 ctgtggatac cctgaacctc cttcagccag aggatgaact tcttgaggtc aacggcatgc
     2161 agctttatgg gaagtctcgc cgagaagcag tctccttcct taaagaagtg cccccaccat
     2221 ttaccttggt ctgctgccgc cggctgtttg atgatgaggc ctcagttgat gagccaagaa
     2281 ccatggagcc tgctcttctt gaggccgagg ttgaccacag tgtagatgtc aacattgaag
     2341 atgatgatga tggagaatta gccctgtggt ctcctgaagt caagactgtg gagctggtga
     2401 aagactgcaa aggcttagga ttcagtattt tggattatca ggaccccctg gatcccacgc
     2461 ggtcagtgat tgtgattcgc tccttggtgg cagatggtgt agcggaaaga agtggagaac
     2521 ttttacctgg agatcgccta gtctccgtca atgagttctc cttggacaat gccactcttg
     2581 ctgaggctgt ggaagtgttg aaggctgtac ccccaggtgt ggtgcatctt ggcatctgta
     2641 agcctttggt ggaagatgag aaggaagagc gttttagttt acattcaaac aacaatggtg
     2701 acagcagcga gcctgcagac gctgttcatg agatccactc atctttaatc cttgaggcac
     2761 cccagggatt tagagatgag ccatatcttg aagaactcgt ggatgaacct tttctagatt
     2821 tgggaaagtc tttgcagttc caacaaaaag acgtggacag cagctcggaa gcttgggaaa
     2881 tgcatgagtt cctgagtcct ccgctggacg gcaggggtga ggagagagag atgcttgtcg
     2941 atgaggagta tgaactttat caagatcacc tccgggccat ggagtcaaac ccaccaccac
     3001 cacacattcg ggaggccgct cctgcatctc ccgtgctgga actccaggct ggtacacagt
     3061 ggctgcatgc taacctctca ggaggcgaaa ggctggagtg tcacgatgca gagtccatga
     3121 tgagtgccta tccccaggag atgcagcagt atagctacag cactgcagac atgatggaag
     3181 aaacgtttgg ccttgattcc cgggccccca taccgtcctc tgaaggaaat ggtcaacacg
     3241 gcagatttga tgacatggga caccttcatt cactaacgag cagcagcctg gatttaggca
     3301 tgatgattcc aagtgatctg caaggtcctg gcgtgcttgt cgatcttcca gctgttgctc
     3361 aaagaagaga acaggaagat ttgcctctgt accgactccc cagcgcccgc gttgtcacca
     3421 agccgtcatc acacatggga ctggtgtctt cacggcatgc aaatgctgca tgtgaattac
     3481 cggagagaga ggaaggtgaa ggagaggaga caccgaactt cagccactgg ggtccaccaa
     3541 gaatagttga aatttttaga gaacctaatg tgtctcttgg catcagcatc gttggtggac
     3601 aaacagttat aaaacgcctc aagaatggag aggaactcaa ggggatattc atcaaacaag
     3661 tgttagagga cagtcctgcc gggaagacca atgcgctgaa aaccggagat aaaattcttg
     3721 aggtgtctgg tgtagacctg cagaatgcct cccatgcaga agccgtggag gcaatcaaga
     3781 gtgcgggaaa ccctgtggta ttcgtggtac agagcctgtc atccacccca agggtcatcc
     3841 caactgtgaa taacaaaggc aaaacacctg ccccgaacca ggatcaaaac actcaagaaa
     3901 ggaaagctaa gaggcacgga acagctccac ctccaatgaa gctgcccccg ccctacagag
     3961 ctccatctgc agacatggag ggaagtgaag aagactgtgc gctgaccgac aaaaagatca
     4021 ggcaaagata tgcagacctg ccgggagaac tacacattat cgaactggaa aaggacaaga
     4081 atggactggg gctcagtctc gctggcaata aggacaggtc acggatgagc atcttcgtgg
     4141 tggggattaa tccggaggga cctgctgctg cagacggacg gatgcggatt ggagacgagc
     4201 tgctagagat aaacaatcag attctttatg gaagaagtca tcagaacgca tctgccatta
     4261 ttaagactgc cccaaccagg gtcaaactgg ttttcattag aaacgaagat gcagtcagtc
     4321 agatggccgt cgctcccttc ccggagctat cacattctcc atcgcctgtt gaggatctgg
     4381 gtggcactga acttgtcagt agtgaagagg agagcagtgt ggatgctaaa cacctgcctg
     4441 aaccagaaag ctccaaaccg gaagacctgt cccaggtggt tgatgacaac atggtggcag
     4501 agcagcagaa ggaatcggag tcacctgaca gtgctgcctg ccagataaaa cagcagacat
     4561 attcaacaca agtctcctcc agctcgcaag atagcccatc gtcaccggct ccattgtgtc
     4621 agtcagcaca tgcagacgtc acaggctctg gtaacttcca ggctcctctc ccagtggacc
     4681 ctgctccact ctcggtggac cctgcaacat gtcccatcgt ccctggccag gaaatgatca
     4741 tagaaatatc caagggacgc tccgggctcg ggctcagcat tgttggagga aaagacacac
     4801 ctttggatgc tatagttatc catgaagtct atgaagaagg tgcagctgcc agagatggaa
     4861 gattatgggc tggagaccag atattagagg ttaatggggt tgatctgcgg agctccagcc
     4921 atgaagaagc catcacagcc ctgaggcaga ccccccagaa ggtgcggctg gtggtataca
     4981 gagatgaagc acagtacaga gacgaggaga acttggaggt gttccttgtg gacctgcaga
     5041 agaagactgg ccgaggacta ggcctgagca ttgttgggaa acggagtgga agtggagtgt
     5101 ttatttctga cattgtgaaa ggcggggccg cagacctcga tgggaggtta attcgaggag
     5161 accagatctt gtctgtgaat ggagaggaca tgagacacgc ctcacaggag acagtggcca
     5221 ccatcctgaa gtgtgtccag ggccttgtcc agctggagat tgggagactc cgcgccggtt
     5281 cctgggccgc ctctcggaag acctcgcaga acagccaggg ggatcagcac agtgcgcaca
     5341 gcagctgtcg gccttccttt gccccagtca tcaccagcct acaaaacctg gttggcacaa
     5401 aaagatcttc agatcctcca cagaaatgca cagaggagga accaaggact gtagagataa
     5461 tcagagagct cagcgatgcc cttgggatca gtatcgctgg aggaaaaggg agtcctttag
     5521 gagatatccc catatttatt gccatgattc aggccaacgg agtggccgca cggacccaga
     5581 agcttaaggt tggagatcgg attgtgagca ttaatggaca acctctggat ggactgtctc
     5641 acacagatgc cgttaatcta ctgaagaatg ccttcgggcg cattatcctg caggttgtgg
     5701 cagataccaa cataagtgcc atagcgaccc agctggaaat catgtctgca ggctcccagc
     5761 ttggctctcc gactgctgac cgacatccgg aagacacaga ggagcagatg cagaggacgg
     5821 ctgattaaag tgaagtgacc agatcttagc tgaaatggcg agaccctgga aggcattacc
     5881 atgagcaagc tgcctccatt ctaaagcagc agagagggac tgtggccttg actgtgctgc
     5941 cgtgagctgc gggtcctgat catgacacac tttttcacga gactgctgca gaattctgcg
     6001 gcttctggtt gggatgaaca gttgcctcgg ctaaagccca gcatcatcac tggctctgac
     6061 tctgtttgca gaaacagagc tgctgtctct gcttcctgct catatccctc atccccacag
     6121 aggcttagct gcaagctcct gtggtctcat ctaatgagta gaaacaaagg tttagcttgt
     6181 catcttaact cgtgatttac ttatgctaat ttgcctcttc aaataaacca gaaaacatta
     6241 gcagtgtaat taacttcctc gcaatgaact attcatactc tgccgctggg aattactgcg
     6301 ttctgttctg tgtgactcag tcaagtagac ctcgcatccc tgcctctaga ttgatctgct
     6361 gttagtcctt ggtgattcgg aggagtccat ttacagactt tgtaatctac ttggagtcct
     6421 aacaggcgtt gattctgagt ttgacaagcg cacactgctc agcaagtatg ccttggtctc
     6481 cacaggaaca agtaaccctc gagtttgagt tccacccatg ctagctcaca ttactgggac
     6541 gctaactggg agtggtgggc atctcagcag atcggaatca cccgttccct acccccctag
     6601 actgcaggtg aggaggtgga aaccctagac cacactgtag actgtagaga tgagcaagtt
     6661 cgatcggcct cagccttatc agaagcaagt tacaagtttg gttagccttt ctctcacctt
     6721 cgtaccaacc tgcacagtgg ctcagcctgc agcggctgtg tgcagctcgg gaacttaaag
     6781 caaatgacct gggaatcaga cacagaagtg cttagcttga gtttcccagc ctctacctcc
     6841 tattggctga agttctgtag ctaagaaagc agctgtggct gagagcatca agagtcctca
     6901 gagcatgcaa tgggctggga agggagatgg atggtcatca ccaagcaccg tagagtcgtc
     6961 tgttgaaagc aaaggaaact accacgaagg gtcagcaata gacatagctt agcattctag
     7021 gactataact cgatgcagca gaatgttcag taattaccca gaatttaatg ggccctaatt
     7081 taaaatgtta tttaattagt gaggatttta actgatattc cttttgagta gatgcaatcc
     7141 caaagtgcat taactcttgt ggctattcta aagtgcagaa tgcctcaatt ttatgttgat
     7201 ggtgtattcc aatgactggt attaagcttt ttgagattct gtagggtttt tagaatttat
     7261 aatgtatcca aaatacatgg ttttggtagg ctctcatctc ccagttcatg agaagccacc
     7321 aacctcagtg tcctctgtga atggtaccca aaagaaggtc tcaagcagca aaaaccaaat
     7381 gaagcccaaa tgaaagtgca ccttagaaga caaagataac agcattaatg ctctccaagt
     7441 gcgatcttgc ttacttttga tggaatggcg gcgttaaata cacattttga aatga
//
