LOCUS       XM_006502701            7279 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PATJ, crumbs cell polarity complex
            component (Patj), transcript variant X3, mRNA.
ACCESSION   XM_006502701
VERSION     XM_006502701.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7279
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..7279
                     /gene="Patj"
                     /gene_synonym="Cipp; Inadl"
                     /note="PATJ, crumbs cell polarity complex component;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 61 ESTs, 180 long SRA reads, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 5 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:12695"
                     /db_xref="MGI:MGI:1277960"
     CDS             108..5612
                     /gene="Patj"
                     /gene_synonym="Cipp; Inadl"
                     /codon_start=1
                     /product="inaD-like protein isoform X1"
                     /protein_id="XP_006502764.1"
                     /db_xref="GeneID:12695"
                     /db_xref="MGI:MGI:1277960"
                     /translation="MPENPAAEKMQVLQVLDRLRGKLQEKGDTTQNEKLSAFYETLKS
                     PLFNQILTLQQSIKQLKGQLSHIPSDCSANFDFSRKGLLVFTDGSITNGNAQRPCSNV
                     TASELLPWTQKSASEDFNSVIQQMAQGRHVEYIDIERPSTGGLGFSVVALRSQSLGLI
                     DIFVKEVHPGSVADRDHRLKENDQILAINDTPLDQNISHQQAIALLQQATGSLRLVVA
                     REVGHTQGRASTSSADTTLPETVCWGHTEEVELINDGSGLGFGIVGGKSSGVVVRTIV
                     PGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPVGEIAV
                     TPPTPVSLPVALPAVATRTLDSDRSPFETYSVELVKKDGQSLGIRIVGYVGTAHPGEA
                     SGIYVKSIIPGSAAYHNGQIQVNDKIVAVDGVNIQGFANQDVVEVLRNAGQVVHLTLV
                     RRKTSLSASPFEHSSSRETVAEPPKVPERAGSPKPEANLSVEAEEIGERLDNLKNNTV
                     QALEKPDVYPEKVPGSPENELKSRWENLLGPDYEVMVATLDAQIADDEELQKYSKLLP
                     IHTLRLGMEVDSFDGHHYISSVAPGGPVDTLNLLQPEDELLEVNGMQLYGKSRREAVS
                     FLKEVPPPFTLVCCRRLFDDEASVDEPRTMEPALLEAEVDHSVDVNIEDDDDGELALW
                     SPEVKTVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGELLPGDRLV
                     SVNEFSLDNATLAEAVEVLKAVPPGVVHLGICKPLVEDEKEERFSLHSNNNGDSSEPA
                     DAVHEIHSSLILEAPQGFRDEPYLEELVDEPFLDLGKSLQFQQKDVDSSSEAWEMHEF
                     LSPPLDGRGEEREMLVDEEYELYQDHLRAMESNPPPPHIREAAPASPVLELQAGTQWL
                     HANLSGGERLECHDAESMMSAYPQEMQQYSYSTADMMEETFGLDSRAPIPSSEGNGQH
                     GRFDDMGHLHSLTSSSLDLGMMIPSDLQGPGVLVDLPAVAQRREQEDLPLYRLPSARV
                     VTKPSSHMGLVSSRHANAACELPEREEGEGEETPNFSHWGPPRIVEIFREPNVSLGIS
                     IVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHAE
                     AVEAIKSAGNPVVFVVQSLSSTPRVIPTVNNKGKTPAPNQDQNTQERKAKRHGTAPPP
                     MKLPPPYRAPSADMEGSEEDCALTDKKIRQRYADLPGELHIIELEKDKNGLGLSLAGN
                     KDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPTRV
                     KLVFIRNEDAVSQMAVAPFPELSHSPSPVEDLGGTELVSSEEESSVDAKHLPEPESSK
                     PEDLSQVVDDNMVAEQQKESESPDSAACQIKQQTYSTQVSSSSQDSPSSPAPLCQSAH
                     ADVTGSGNFQAPLPVDPAPLSVDPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPL
                     DAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRSSSHEEAITALRQTPQKVRLVVY
                     RDEAQYRDEENLEVFLVDLQKKTGRGLGLSIVGKRSGSGVFISDIVKGGAADLDGRLI
                     RGDQILSVNGEDMRHASQETVATILKCVQGLVQLEIGRLRAGSWAASRKTSQNSQGDQ
                     HSAHSSCRPSFAPVITSLQNLVGTKRSSDPPQKCTEEEPRTVEIIRELSDALGISIAG
                     GKGSPLGDIPIFIAMIQANGVAARTQKLKVGDRIVSINGQPLDGLSHTDAVNLLKNAF
                     GRIILQVVADTNISAIATQLEIMSAGSQLGSPTADRHPEDTEEQMQRTAD"
ORIGIN      
        1 tctttaacct gcatctaacc tgtggtctca tcgtcgtgtc cgacgattgt gtcttcaatg
       61 aagaagctta cggacttttt ggaagtgatt gaaaagaata tcccaaaatg cctgaaaacc
      121 ctgctgcaga gaagatgcag gtcctgcagg tcctggatcg ccttcgaggg aagctgcagg
      181 agaagggaga cacgacgcag aacgagaagc tgtctgcgtt ctacgagacg ctgaagagcc
      241 ctctcttcaa ccagatcctt acactgcagc agtccatcaa gcagctgaag ggacagctta
      301 gccacatccc ctcagattgc tcagccaact ttgacttttc tcgcaagggc ttgctagtgt
      361 tcacggatgg ttccattaca aacgggaatg cccaaaggcc ttgtagtaat gtgactgcat
      421 ctgaactgtt gccctggact caaaagtcag caagtgaaga ctttaactca gtcattcagc
      481 agatggctca gggccggcac gttgagtata tagatattga acgtccttca actggaggcc
      541 ttggattcag tgtggtggct ctgagaagcc aaagcctggg attaattgat atctttgtga
      601 aggaagtcca tcccgggagt gtagcagaca gggatcacag attgaaggaa aatgaccaga
      661 ttttggccat taatgacacc ccattggatc agaatatttc ccatcagcag gcgattgcat
      721 tactacaaca agccactgga tctctgcggc tggttgtggc cagggaagtg ggccacacac
      781 agggccgagc atccaccagc tcagctgata caactctgcc agaaacggtg tgttggggcc
      841 acacggaaga ggttgagctc attaacgatg gctctggatt aggttttggg atagttggag
      901 ggaaatccag cggcgtggtc gtgaggacta ttgttcctgg aggactggca gaccgagatg
      961 gaagactgca gacaggggat cacatcttga agattggtgg tacaaatgtt caagggatga
     1021 ccagtgaaca agttgctcaa gtgctaagga actgtgggaa ttcagtgagg atgctggtgg
     1081 ccagagaccc tgttggtgaa attgcagtaa cacctcctac ccctgtatcc ttacctgttg
     1141 ccctacctgc tgtagccaca aggacccttg attctgacag gtctcctttt gaaacttaca
     1201 gtgttgaact tgttaagaaa gatgggcaga gtcttgggat tagaattgtt ggctatgttg
     1261 gaacagctca tccaggggaa gcttccggga tttatgtgaa aagtataatt ccaggcagcg
     1321 ctgcatacca caatggccaa attcaagtga atgataaaat cgtggctgtg gatggtgtga
     1381 atattcaagg ttttgctaat caggatgttg tcgaagtatt gcggaatgct gggcaggtgg
     1441 tacacctgac ccttgttcga aggaaaacat ctttatctgc ttctccgttt gagcactctt
     1501 caagcagaga aactgttgca gaaccaccta aagtaccaga acgagcagga tccccgaaac
     1561 cagaagctaa tttgagtgtg gaagcagagg aaattggaga aagactggat aatctaaaaa
     1621 acaacactgt acaagcctta gaaaaaccag atgtatatcc agagaaagtt ccaggctctc
     1681 cagaaaatga gctgaaatcc agatgggaaa acctactggg cccagattat gaagtaatgg
     1741 tagccacttt ggatgctcag attgcagacg atgaggagct acagaaatac tcgaagctgc
     1801 tgcctatcca cacgctcagg cttgggatgg aagtcgactc cttcgatggg caccactata
     1861 tctcctcagt tgctcctggg ggtcctgtgg ataccctgaa cctccttcag ccagaggatg
     1921 aacttcttga ggtcaacggc atgcagcttt atgggaagtc tcgccgagaa gcagtctcct
     1981 tccttaaaga agtgccccca ccatttacct tggtctgctg ccgccggctg tttgatgatg
     2041 aggcctcagt tgatgagcca agaaccatgg agcctgctct tcttgaggcc gaggttgacc
     2101 acagtgtaga tgtcaacatt gaagatgatg atgatggaga attagccctg tggtctcctg
     2161 aagtcaagac tgtggagctg gtgaaagact gcaaaggctt aggattcagt attttggatt
     2221 atcaggaccc cctggatccc acgcggtcag tgattgtgat tcgctccttg gtggcagatg
     2281 gtgtagcgga aagaagtgga gaacttttac ctggagatcg cctagtctcc gtcaatgagt
     2341 tctccttgga caatgccact cttgctgagg ctgtggaagt gttgaaggct gtacccccag
     2401 gtgtggtgca tcttggcatc tgtaagcctt tggtggaaga tgagaaggaa gagcgtttta
     2461 gtttacattc aaacaacaat ggtgacagca gcgagcctgc agacgctgtt catgagatcc
     2521 actcatcttt aatccttgag gcaccccagg gatttagaga tgagccatat cttgaagaac
     2581 tcgtggatga accttttcta gatttgggaa agtctttgca gttccaacaa aaagacgtgg
     2641 acagcagctc ggaagcttgg gaaatgcatg agttcctgag tcctccgctg gacggcaggg
     2701 gtgaggagag agagatgctt gtcgatgagg agtatgaact ttatcaagat cacctccggg
     2761 ccatggagtc aaacccacca ccaccacaca ttcgggaggc cgctcctgca tctcccgtgc
     2821 tggaactcca ggctggtaca cagtggctgc atgctaacct ctcaggaggc gaaaggctgg
     2881 agtgtcacga tgcagagtcc atgatgagtg cctatcccca ggagatgcag cagtatagct
     2941 acagcactgc agacatgatg gaagaaacgt ttggccttga ttcccgggcc cccataccgt
     3001 cctctgaagg aaatggtcaa cacggcagat ttgatgacat gggacacctt cattcactaa
     3061 cgagcagcag cctggattta ggcatgatga ttccaagtga tctgcaaggt cctggcgtgc
     3121 ttgtcgatct tccagctgtt gctcaaagaa gagaacagga agatttgcct ctgtaccgac
     3181 tccccagcgc ccgcgttgtc accaagccgt catcacacat gggactggtg tcttcacggc
     3241 atgcaaatgc tgcatgtgaa ttaccggaga gagaggaagg tgaaggagag gagacaccga
     3301 acttcagcca ctggggtcca ccaagaatag ttgaaatttt tagagaacct aatgtgtctc
     3361 ttggcatcag catcgttggt ggacaaacag ttataaaacg cctcaagaat ggagaggaac
     3421 tcaaggggat attcatcaaa caagtgttag aggacagtcc tgccgggaag accaatgcgc
     3481 tgaaaaccgg agataaaatt cttgaggtgt ctggtgtaga cctgcagaat gcctcccatg
     3541 cagaagccgt ggaggcaatc aagagtgcgg gaaaccctgt ggtattcgtg gtacagagcc
     3601 tgtcatccac cccaagggtc atcccaactg tgaataacaa aggcaaaaca cctgccccga
     3661 accaggatca aaacactcaa gaaaggaaag ctaagaggca cggaacagct ccacctccaa
     3721 tgaagctgcc cccgccctac agagctccat ctgcagacat ggagggaagt gaagaagact
     3781 gtgcgctgac cgacaaaaag atcaggcaaa gatatgcaga cctgccggga gaactacaca
     3841 ttatcgaact ggaaaaggac aagaatggac tggggctcag tctcgctggc aataaggaca
     3901 ggtcacggat gagcatcttc gtggtgggga ttaatccgga gggacctgct gctgcagacg
     3961 gacggatgcg gattggagac gagctgctag agataaacaa tcagattctt tatggaagaa
     4021 gtcatcagaa cgcatctgcc attattaaga ctgccccaac cagggtcaaa ctggttttca
     4081 ttagaaacga agatgcagtc agtcagatgg ccgtcgctcc cttcccggag ctatcacatt
     4141 ctccatcgcc tgttgaggat ctgggtggca ctgaacttgt cagtagtgaa gaggagagca
     4201 gtgtggatgc taaacacctg cctgaaccag aaagctccaa accggaagac ctgtcccagg
     4261 tggttgatga caacatggtg gcagagcagc agaaggaatc ggagtcacct gacagtgctg
     4321 cctgccagat aaaacagcag acatattcaa cacaagtctc ctccagctcg caagatagcc
     4381 catcgtcacc ggctccattg tgtcagtcag cacatgcaga cgtcacaggc tctggtaact
     4441 tccaggctcc tctcccagtg gaccctgctc cactctcggt ggaccctgca acatgtccca
     4501 tcgtccctgg ccaggaaatg atcatagaaa tatccaaggg acgctccggg ctcgggctca
     4561 gcattgttgg aggaaaagac acacctttgg atgctatagt tatccatgaa gtctatgaag
     4621 aaggtgcagc tgccagagat ggaagattat gggctggaga ccagatatta gaggttaatg
     4681 gggttgatct gcggagctcc agccatgaag aagccatcac agccctgagg cagacccccc
     4741 agaaggtgcg gctggtggta tacagagatg aagcacagta cagagacgag gagaacttgg
     4801 aggtgttcct tgtggacctg cagaagaaga ctggccgagg actaggcctg agcattgttg
     4861 ggaaacggag tggaagtgga gtgtttattt ctgacattgt gaaaggcggg gccgcagacc
     4921 tcgatgggag gttaattcga ggagaccaga tcttgtctgt gaatggagag gacatgagac
     4981 acgcctcaca ggagacagtg gccaccatcc tgaagtgtgt ccagggcctt gtccagctgg
     5041 agattgggag actccgcgcc ggttcctggg ccgcctctcg gaagacctcg cagaacagcc
     5101 agggggatca gcacagtgcg cacagcagct gtcggccttc ctttgcccca gtcatcacca
     5161 gcctacaaaa cctggttggc acaaaaagat cttcagatcc tccacagaaa tgcacagagg
     5221 aggaaccaag gactgtagag ataatcagag agctcagcga tgcccttggg atcagtatcg
     5281 ctggaggaaa agggagtcct ttaggagata tccccatatt tattgccatg attcaggcca
     5341 acggagtggc cgcacggacc cagaagctta aggttggaga tcggattgtg agcattaatg
     5401 gacaacctct ggatggactg tctcacacag atgccgttaa tctactgaag aatgccttcg
     5461 ggcgcattat cctgcaggtt gtggcagata ccaacataag tgccatagcg acccagctgg
     5521 aaatcatgtc tgcaggctcc cagcttggct ctccgactgc tgaccgacat ccggaagaca
     5581 cagaggagca gatgcagagg acggctgatt aaagtgaagt gaccagatct tagctgaaat
     5641 ggcgagaccc tggaaggcat taccatgagc aagctgcctc cattctaaag cagcagagag
     5701 ggactgtggc cttgactgtg ctgccgtgag ctgcgggtcc tgatcatgac acactttttc
     5761 acgagactgc tgcagaattc tgcggcttct ggttgggatg aacagttgcc tcggctaaag
     5821 cccagcatca tcactggctc tgactctgtt tgcagaaaca gagctgctgt ctctgcttcc
     5881 tgctcatatc cctcatcccc acagaggctt agctgcaagc tcctgtggtc tcatctaatg
     5941 agtagaaaca aaggtttagc ttgtcatctt aactcgtgat ttacttatgc taatttgcct
     6001 cttcaaataa accagaaaac attagcagtg taattaactt cctcgcaatg aactattcat
     6061 actctgccgc tgggaattac tgcgttctgt tctgtgtgac tcagtcaagt agacctcgca
     6121 tccctgcctc tagattgatc tgctgttagt ccttggtgat tcggaggagt ccatttacag
     6181 actttgtaat ctacttggag tcctaacagg cgttgattct gagtttgaca agcgcacact
     6241 gctcagcaag tatgccttgg tctccacagg aacaagtaac cctcgagttt gagttccacc
     6301 catgctagct cacattactg ggacgctaac tgggagtggt gggcatctca gcagatcgga
     6361 atcacccgtt ccctaccccc ctagactgca ggtgaggagg tggaaaccct agaccacact
     6421 gtagactgta gagatgagca agttcgatcg gcctcagcct tatcagaagc aagttacaag
     6481 tttggttagc ctttctctca ccttcgtacc aacctgcaca gtggctcagc ctgcagcggc
     6541 tgtgtgcagc tcgggaactt aaagcaaatg acctgggaat cagacacaga agtgcttagc
     6601 ttgagtttcc cagcctctac ctcctattgg ctgaagttct gtagctaaga aagcagctgt
     6661 ggctgagagc atcaagagtc ctcagagcat gcaatgggct gggaagggag atggatggtc
     6721 atcaccaagc accgtagagt cgtctgttga aagcaaagga aactaccacg aagggtcagc
     6781 aatagacata gcttagcatt ctaggactat aactcgatgc agcagaatgt tcagtaatta
     6841 cccagaattt aatgggccct aatttaaaat gttatttaat tagtgaggat tttaactgat
     6901 attccttttg agtagatgca atcccaaagt gcattaactc ttgtggctat tctaaagtgc
     6961 agaatgcctc aattttatgt tgatggtgta ttccaatgac tggtattaag ctttttgaga
     7021 ttctgtaggg tttttagaat ttataatgta tccaaaatac atggttttgg taggctctca
     7081 tctcccagtt catgagaagc caccaacctc agtgtcctct gtgaatggta cccaaaagaa
     7141 ggtctcaagc agcaaaaacc aaatgaagcc caaatgaaag tgcaccttag aagacaaaga
     7201 taacagcatt aatgctctcc aagtgcgatc ttgcttactt ttgatggaat ggcggcgtta
     7261 aatacacatt ttgaaatga
//
