LOCUS       NM_001167586             574 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus prostate and testis expressed 12 (Pate12), mRNA.
ACCESSION   NM_001167586 XM_915280 XM_986261
VERSION     NM_001167586.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Loughner CL, Bruford EA, McAndrews MS, Delp EE, Swamynathan S and
            Swamynathan SK.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Levitin F, Weiss M, Hahn Y, Stern O, Papke RL, Matusik R, Nandana
            SR, Ziv R, Pichinuk E, Salame S, Bera T, Vincent J, Lee B, Pastan I
            and Wreschner DH.
  TITLE     PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR
            proteins that are expressed in reproductive and neuron-rich tissues
            and possess neuromodulatory activity
  JOURNAL   J Biol Chem 283 (24), 16928-16939 (2008)
   PUBMED   18387948
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC159896.3.
            
            On Jun 18, 2019 this sequence version replaced NM_001167586.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ032923.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on single protein-coding
                                                transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               AC159896.3         135911-136026       c
            117-230             AC159896.3         134958-135071       c
            231-387             AC159896.3         134346-134502       c
            388-574             AC159896.3         132917-133103       c
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 20.63 cM"
     gene            1..574
                     /gene="Pate12"
                     /gene_synonym="EG639025; Gm7257; Pate-q"
                     /note="prostate and testis expressed 12"
                     /db_xref="GeneID:639025"
                     /db_xref="MGI:MGI:3647831"
     exon            1..116
                     /gene="Pate12"
                     /gene_synonym="EG639025; Gm7257; Pate-q"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..355
                     /gene="Pate12"
                     /gene_synonym="EG639025; Gm7257; Pate-q"
                     /note="prostate and testis expressed Q"
                     /codon_start=1
                     /product="prostate and testis expressed Q precursor"
                     /protein_id="NP_001161058.1"
                     /db_xref="CCDS:CCDS52764.1"
                     /db_xref="GeneID:639025"
                     /db_xref="MGI:MGI:3647831"
                     /translation="MGKHILQLLLVLSLLVMSSQALTCITCDRINSQGICESGEGCCQ
                     AKPGEKCASLITLKDGKIQFGNQRCANICFTGTVQTGDQTVKMKCCKKRSFCNEL"
     exon            117..230
                     /gene="Pate12"
                     /gene_synonym="EG639025; Gm7257; Pate-q"
                     /inference="alignment:Splign:2.1.0"
     exon            231..387
                     /gene="Pate12"
                     /gene_synonym="EG639025; Gm7257; Pate-q"
                     /inference="alignment:Splign:2.1.0"
     exon            388..574
                     /gene="Pate12"
                     /gene_synonym="EG639025; Gm7257; Pate-q"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcactctg tcctctcctc tgatgcattc tggtctgcag atcaatctca ctgcaatggg
       61 aaagcacatc ttgcagctcc tgctggtcct gtctttgctg gtgatgtcct cgcaagcttt
      121 gacatgtatc acgtgtgata ggatcaattc tcaggggatt tgtgagagtg gagaaggttg
      181 ctgtcaggct aaacctggag agaaatgtgc ctcgctcata acccttaaag atggcaaaat
      241 tcagtttgga aaccaaagat gtgctaacat ttgcttcact gggactgtgc agactggaga
      301 tcaaacagta aaaatgaagt gctgcaagaa aaggtctttc tgcaatgaac tataaatctg
      361 acacttaatt gcagtgttgg attttagtac tgtttattga gtcttcaccc tggagcatgc
      421 caaaaaagaa ttgtctactg accatgactg aagccctcac gatgcattct acatcatgta
      481 cttagatcgt ttttccttct acatttatat tttcatatgt tgttgggtgc tctgtaatat
      541 gttatatgcc ttataaattt tatttcttat ttta
//
