LOCUS       NM_001128510             561 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus prostate and testis expressed 11 (Pate11), mRNA.
ACCESSION   NM_001128510 XM_001476733 XM_011242587
VERSION     NM_001128510.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Loughner CL, Bruford EA, McAndrews MS, Delp EE, Swamynathan S and
            Swamynathan SK.
  TITLE     Organization, evolution and functions of the human and mouse
            Ly6/uPAR family genes
  JOURNAL   Hum Genomics 10, 10 (2016)
   PUBMED   27098205
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Levitin F, Weiss M, Hahn Y, Stern O, Papke RL, Matusik R, Nandana
            SR, Ziv R, Pichinuk E, Salame S, Bera T, Vincent J, Lee B, Pastan I
            and Wreschner DH.
  TITLE     PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR
            proteins that are expressed in reproductive and neuron-rich tissues
            and possess neuromodulatory activity
  JOURNAL   J Biol Chem 283 (24), 16928-16939 (2008)
   PUBMED   18387948
  REMARK    GeneRIF: analysis of PATE, expressed primarily in prostate and less
            in testis, and additional PATE-like genes PATE-M, PATE-DJ, and
            PATE-B
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC159896.3.
            
            On or before Jun 18, 2019 this sequence version replaced
            XM_011242587.1, NM_001128510.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: EU703629.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               AC159896.3         92157-92272         c
            117-230             AC159896.3         91261-91374         c
            231-387             AC159896.3         90643-90799         c
            388-561             AC159896.3         86020-86193         c
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 20.64 cM"
     gene            1..561
                     /gene="Pate11"
                     /gene_synonym="671003; Gm9513; Pate-P"
                     /note="prostate and testis expressed 11"
                     /db_xref="GeneID:671003"
                     /db_xref="MGI:MGI:3779923"
     exon            1..116
                     /gene="Pate11"
                     /gene_synonym="671003; Gm9513; Pate-P"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..355
                     /gene="Pate11"
                     /gene_synonym="671003; Gm9513; Pate-P"
                     /note="secreted TFP/Ly-6/uPAR protein PATE-P"
                     /codon_start=1
                     /product="prostate and testis expressed P precursor"
                     /protein_id="NP_001121982.1"
                     /db_xref="CCDS:CCDS52765.1"
                     /db_xref="GeneID:671003"
                     /db_xref="MGI:MGI:3779923"
                     /translation="MGKHVLQLLLVLSLLVMSLQALTCITCDRMNSRRICEGKEGCCQ
                     ARPGEKCASFITLKDGKIQFGSQRCADLCFTGTVMIGDKTVKMNCCNNKSFCNKL"
     exon            117..230
                     /gene="Pate11"
                     /gene_synonym="671003; Gm9513; Pate-P"
                     /inference="alignment:Splign:2.1.0"
     exon            231..387
                     /gene="Pate11"
                     /gene_synonym="671003; Gm9513; Pate-P"
                     /inference="alignment:Splign:2.1.0"
     exon            388..561
                     /gene="Pate11"
                     /gene_synonym="671003; Gm9513; Pate-P"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcactgta tcctctcctc tgctgctttc tggtctgcag atcaatcttg cagcaatggg
       61 aaagcacgtc ttgcagctcc tgctggtcct gtctttgctg gtgatgtccc tgcaagcttt
      121 gacatgtatc acatgtgata ggatgaattc tcggagaatt tgtgagggga aagaaggttg
      181 ctgtcaggct agacctggag agaagtgtgc ctcgttcata acccttaaag atggcaaaat
      241 tcagtttgga agccagagat gtgctgacct ttgcttcact gggactgtta tgattggaga
      301 taagacagta aaaatgaact gttgcaacaa caaatctttc tgcaataaac tataaatctt
      361 atacttaatt gtactcctgg attttagatt ctacagttta acaagtgtat cttctcacaa
      421 ccaccaaaat taagattcag agatttttca atacctccag aagtcccatg tcccttcact
      481 gtcatgaaag cctgccttcg ctgtcatcct ctcccaaact ttgacattac actgtttccc
      541 tgataaagag ttcaattctt t
//
