LOCUS       NM_029249               3628 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus PARP1 binding protein (Parpbp), mRNA.
ACCESSION   NM_029249
VERSION     NM_029249.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3628)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3628)
  AUTHORS   Gresakova,V., Novosadova,V., Prochazkova,M., Prochazka,J. and
            Sedlacek,R.
  TITLE     Dual role of Fam208a during zygotic cleavage and early embryonic
            development
  JOURNAL   Exp Cell Res 406 (2), 112723 (2021)
   PUBMED   34216590
REFERENCE   3  (bases 1 to 3628)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3628)
  AUTHORS   Mochizuki,A.L., Katanaya,A., Hayashi,E., Hosokawa,M., Moribe,E.,
            Motegi,A., Ishiai,M., Takata,M., Kondoh,G., Watanabe,H.,
            Nakatsuji,N. and Chuma,S.
  TITLE     PARI Regulates Stalled Replication Fork Processing To Maintain
            Genome Stability upon Replication Stress in Mice
  JOURNAL   Mol Cell Biol 37 (23), e00117-17 (2017)
   PUBMED   28894029
  REMARK    GeneRIF: PARI is a latent modulator of stalled fork processing,
            which is required for stable genome inheritance under both
            endogenous and exogenous replication stress
            Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3628)
  AUTHORS   Sokolowski,K., Tran,T., Esumi,S., Kamal,Y., Oboti,L.,
            Lischinsky,J., Goodrich,M., Lam,A., Carter,M., Nakagawa,Y. and
            Corbin,J.G.
  TITLE     Molecular and behavioral profiling of Dbx1-derived neurons in the
            arcuate, lateral and ventromedial hypothalamic nuclei
  JOURNAL   Neural Dev 11 (1), 12 (2016)
   PUBMED   27209204
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3628)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   7  (bases 1 to 3628)
  AUTHORS   van Dam,S., Cordeiro,R., Craig,T., van Dam,J., Wood,S.H. and de
            Magalhaes,J.P.
  TITLE     GeneFriends: an online co-expression analysis tool to identify
            novel gene targets for aging and complex diseases
  JOURNAL   BMC Genomics 13, 535 (2012)
   PUBMED   23039964
  REMARK    GeneRIF: Parpbp(4930547N16Rik) is strongly co-expressed with known
            cancer-associated genes.
            Publication Status: Online-Only
REFERENCE   8  (bases 1 to 3628)
  AUTHORS   Garcia-Frigola,C., Burgaya,F., Calbet,M., Lopez-Domenech,G., de
            Lecea,L. and Soriano,E.
  TITLE     A collection of cDNAs enriched in upper cortical layers of the
            embryonic mouse brain
  JOURNAL   Brain Res Mol Brain Res 122 (2), 133-150 (2004)
   PUBMED   15010206
REFERENCE   9  (bases 1 to 3628)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC070476.1, AK030970.1 and AK137160.1.
            
            On Feb 27, 2007 this sequence version replaced NM_029249.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC070476.1, AK137160.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3177              BC070476.1         1-3177
            3178-3592           AK030970.1         2007-2421
            3593-3628           AK137160.1         3543-3578
FEATURES             Location/Qualifiers
     source          1..3628
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 43.7 cM"
     gene            1..3628
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /note="PARP1 binding protein"
                     /db_xref="GeneID:75317"
                     /db_xref="MGI:MGI:1922567"
     exon            1..446
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            447..602
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            603..833
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            834..938
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            939..1109
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1264
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1445
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1624
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            1625..1706
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            1707..1839
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     exon            1840..3628
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      2244
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /note="major polyA site"
     regulatory      2960..2965
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /note="hexamer: AATAAA"
     polyA_site      2982
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /note="major polyA site"
     regulatory      3577..3582
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /note="hexamer: ATTAAA"
     polyA_site      3594
                     /gene="Parpbp"
                     /gene_synonym="4930547N16Rik; PARI"
                     /note="major polyA site"
ORIGIN      
        1 gacgccgagg cgattcaaac ctctgccttc cggcgtcctg gctgcgctgc tcctccctcc
       61 gcttgcaccc agcctgggtc actggacgag gtgggtctgg tctcttctgt gcccccgggt
      121 cgcagttcca gtgggcattc gggctgctgc tctgcgaacg catctcggtg acagcgacgt
      181 gccagccagt ggcgttgtct gcgcagtggc ttcgccccga cttcacggtg tcccgtggaa
      241 aaaaagacgc tagggcttcg gcaagaccga aacccatcaa aatcttcttt tagtccgtta
      301 gatcggggat ctggcacacg acgagtgcag gcttctcaga ttttctgtcg ttgcatcctt
      361 cagagggcca ttccggacca ggcaagaaga ataactgtca cctgtcatct tttaatggag
      421 atttgctaag tgctggcaat aaggagagga tggctgtgct taatcagctg cccgtcttgg
      481 gtatgattaa agagtttagg aggagttggc gtgctctttg tagctctgaa agaactacgt
      541 tatgcggtcc agactccatg ctcctggccc tgcagctgtc catggcagaa aacaacaaac
      601 agcacagagg agaatttaca gtctgtctca gtgatgtctt actgacatgg aagtacttct
      661 tacacgagaa actgaacttg cccattgaaa atatgaaagt ggttgagcac tatgaagaca
      721 ttaagaaaac atatgatgat ttcttgaaga acagtaatac actagatctg attgatgttt
      781 ataaaaaatg tagcagcttg acctctaatt atgagaataa catgatttcc cctattcaac
      841 tccgggattt tctgtctggc acagagtatg cagtcagtga cgaagctaat cctcacatgc
      901 cagagtcacc agtaaaatgc agccagaatg acgagcaggt acgggtattg gtaaagaaaa
      961 ttttcttttc atatttgagc ctgctagtga attcaaagaa tgacctggct ttggcttcca
     1021 ttctcaacat ccctgatcga ggactgggga gagaggcctt caccaacttg aagcatgctg
     1081 ctcgagagaa acagttgtct atgtttctga tggccacgtc atttatcagg acattggaac
     1141 ttggaggaaa aggatatgcg ccgtcaccat cagatcctct gtgggcgcat gtaaaaggcc
     1201 tgtcggagtt tattaatttc attgacaagc tagatgaaat tcttggaaag ataccaaatc
     1261 caagccttgc agggagtcgg atattatcag cgataaagat gcagctgatc aaaggccaca
     1321 gcagtgggga gcctttttat aaagcagtag aggaagttgt tcaggatttg aatttgagga
     1381 ttaaaaatat tattaattct caagaaggtg tagctgtcag cgccaacaac atcagtcctg
     1441 tcccgccaaa atcttttgct ataaaccatg atactgccta ctgtggcaga gatgctgtga
     1501 aaattttgct ggtccttttg gatgaagatg cagccagtgc tcctaccaga aataaagcag
     1561 agcttttata caatgacgaa agtacagttc ctcatagtgg accatctgtt ctcacactct
     1621 ttaggtctcc cacacaagag aaaaacacat cagttaaacc tctcagagag cgaatccata
     1681 agtcactgca aacagagaaa aataagatgt ggcagacatt aattagatca cagtttgctt
     1741 gtacttataa agatgactgc ataatgagca agaataaatg gcatgttaac tcatcatcaa
     1801 agcccttgtc tgctcttcac ttggaagatg atgtttctga gggagcacag tcatctgttg
     1861 gaaaagcaag aattgaagca agttctgaaa atgcccacgt gggcagatgg aagggtgaca
     1921 aactaccaag aaaatctaca caaaggcaga tatcgaagag gaaacagctg gacttagaca
     1981 gtgagaatct tcactgtgac cgtggaaatg aactgtacca acataagaac attaagatcc
     2041 ctaaagtgcc cagtggctca cacagtaaag ctggtggcaa acttgcccaa ggaacaaaag
     2101 gcaataggtg tcctgccagg ggcaagttga ttcctggcca gaccaagttg acgcagtttt
     2161 ttatgctatg attttgccga ctatgtactt tagatttcag taagaccatt caccaaagcc
     2221 ctgaactaac tttttaaatc ttaagatatg ttgtggtttt ttttttgttt gtttttttta
     2281 gtgaacgctt tcacctttgt ttctcaatat tcgtgtgata cgaacagttc acatgtagca
     2341 ttgtttagtg acttgtgtga gttttatacc cagacctggg tggaatgaag gataaagaca
     2401 tttatttagc ccagcttcca acaaatcaaa gagggtgccc agaaggtcct cacccacact
     2461 tcagtgccct gtatccctgg gaggacaacg actccgtaaa gcgtaaggag gggcgaagag
     2521 ctctggttct tgaggtccag tgggttatta catcgtttcc caagatgtcc catgtgatgc
     2581 tttattattt tcataaatgt atgtgaggct cacatattaa ccactgttca aaaataccag
     2641 taaggcagaa ttatgcagaa cttttgtgag gtttaatgca cacgtcaagc atatcgctta
     2701 cattattaca tatcttaacc aggtcctttt aaaacagaca tttacataat gcacaagtta
     2761 tagcaacatc aagggctttt ctccccgctt gcaatgaatt gttttcttct gtaaggatgt
     2821 tgcggaccag caggtatcag acttgccaac atggtcggta gactcttccc agcatacacc
     2881 tgagcactga aagagaacaa acaatgacta taaataccat gcagaattga gaaaaactgt
     2941 ggacttacaa cgaatccaga ataaatcaaa ctctattact gattttgaaa aatccccatt
     3001 ttttgacacg ggtcgcctac tatttggtag aactgaatta tgggtcttga ttttgttatg
     3061 gtcagatcca actcatttaa gctcagagct cttttataaa attaatatat aggaattgaa
     3121 tgtttagaaa gctactcact gtcaaaatct ctccttccta tgggaaattt agctgagttt
     3181 tcttcatccc caatttctct cttttcctgt gtggactcag cattctgaac tccattctca
     3241 gctgggaagg ctacggatcc tttcagagcg aggtaaggtt ttacagccag actcagtggc
     3301 agcccgtgag ttacaagatt ctgtttggag cctgtgttct gtgaagagaa gttcggtttg
     3361 tatcccagct gtcttcttta aagaagaact aaaatacagt tgtacaacat tcttgctgat
     3421 caattctaag aagctctaca ctgcgttcac ctcccaacat gtgagataca agatacaaag
     3481 attttggata agatggagaa atacctggtt tatatgaaat tttcctagtt atcttaatgc
     3541 acacgatgac tgtttgcatg tatgcctatt tataaaatta aaatacaaag tttacttctg
     3601 ggtggtttat acttataaaa ggcagact
//
