LOCUS       XM_036157251            4266 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus poly (A) polymerase alpha (Papola),
            transcript variant X10, mRNA.
ACCESSION   XM_036157251
VERSION     XM_036157251.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jun 27, 2023 this sequence was replaced by
            NM_001422901.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4266
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..4266
                     /gene="Papola"
                     /gene_synonym="Pap; PapIII; Plap"
                     /note="poly (A) polymerase alpha; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     mRNAs, 175 ESTs, 2245 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 49 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:18789"
                     /db_xref="MGI:MGI:109301"
     CDS             739..2208
                     /gene="Papola"
                     /gene_synonym="Pap; PapIII; Plap"
                     /codon_start=1
                     /product="poly(A) polymerase alpha isoform X10"
                     /protein_id="XP_036013144.1"
                     /db_xref="GeneID:18789"
                     /db_xref="MGI:MGI:109301"
                     /translation="MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECN
                     LNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEIL
                     LSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEF
                     ITLAHVNPQSFPAPKESPDREEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVY
                     RQAINSKMFELDMKIAAMHVKRKQLHQLLPSHVLQKRKKHSTEGVKLTALNDSSLDLS
                     MDSDNSMSVPSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTSIQASEVSVPQANSS
                     ESPGGPSSESIPQTATQPAISPPPKPTVSRVVSSTRLVNPSPRPSGNTATKVPNPIVG
                     VKRTSSPNKEESPKKTKTEEDETSEDANCLALSGHDKTETKEQVDLETSAVQSETVPA
                     SASLLASQKTSSTDLSDIPALPANPIPVIKNSIKLRLNR"
ORIGIN      
        1 tgtgcgtggc ggcgtcagcg gttctagaac gttgctgtgg tagcgctcgg gcgccatgtt
       61 aggacgaagg ggaaggagga gaagcgctta aagcggcggg gcacgggtgc aggactgggt
      121 tggccccggg gctgaggtag gctgccgtcc ttcccgcctc ggtggatcat gcccaggacg
      181 gcagcggtcg cgggggggaa gtgactgggc ggtgccggcg ccggagacga tgccgttaat
      241 ctcccacaat ctgtaattga aaatgttgga gggaagattt ttacatttgg atcttacaga
      301 ctaggagtcc acacgaaagg tgctgatatt gatgcgttgt gtgttgcacc aagacatgtt
      361 gatcgaagtg actttttcac ctcattctat gataaattga aattacaaga agaagtgaaa
      421 gatttaagag ctgttgaaga ggcatttgta ccagttatca aactctgttt tgatggaata
      481 gagattgata ttttgtttgc aagattagca ctgcagacta ttccagaaga tttggaccta
      541 cgagatgaca gtctgcttaa aaacctagat ataagatgca taagaagcct taatggttgc
      601 agggtaaccg atgaaatttt acatctagta ccaaacattg acaacttcag gttaactctg
      661 agagccatca aactgtgggc caaacggcac aacatctatt ccaatatatt aggtttcctc
      721 ggtggtgttt cctgggctat gctagtagca agaacttgcc agctttatcc aaatgcaata
      781 gcatcaactc ttgtacataa atttttcttg gtattttcta aatgggaatg gccaaatcca
      841 gtgctattga aacagcctga agaatgcaat cttaatttgc ctgtgtggga cccaagggta
      901 aaccccagtg ataggtacca tcttatgcct ataattacac cagcataccc acagcagaac
      961 tccacgtaca atgtgtccgt ttcaacacgg atggtcatgg ttgaggagtt taaacaaggt
     1021 cttgctatca cagatgaaat tttgctgagt aaggcagagt ggtccaaact ttttgaagct
     1081 ccaaacttct ttcagaagta caagcattat attgtacttc tagcaagtgc gcccacggaa
     1141 aagcagcgtc tggaatgggt gggcttggtg gaatcaaaaa tccgcatcct ggttggaagc
     1201 ttggagaaga atgagtttat tacactggct catgtgaatc cccagtcatt tccagccccc
     1261 aaagaaagtc ctgacaggga agaatttcgc acaatgtggg tgattgggtt agtgtttaaa
     1321 aaaactgaaa actctgaaaa tctcagtgtc gacctcacct atgatatcca gtctttcaca
     1381 gacacagttt ataggcaagc aataaacagc aaaatgtttg agttggatat gaagattgca
     1441 gcaatgcatg tgaagagaaa gcaactccat cagctgctgc ctagtcacgt gcttcagaag
     1501 aggaagaagc attcaacaga aggagtcaag ttaacagctc tgaatgacag cagccttgac
     1561 ttgtctatgg acagtgataa cagcatgtct gtgccttcac ccaccagtgc tatgaagacc
     1621 agtccattga atagttctgg cagctcccag ggcagaaaca gtcctgctcc agctgtgacc
     1681 gcagcatctg tgaccagcat ccaggcttct gaggtttctg taccgcaagc aaattccagt
     1741 gaaagcccag ggggtccatc gagcgaaagc attcctcaaa ctgccacaca gccagccatt
     1801 tctccaccac caaagcctac agtctccaga gttgtctcct caacacgact ggtaaaccca
     1861 tcgcctagac cttcaggaaa cacagcaaca aaagtcccta atcctatagt aggagtcaag
     1921 agaacgtcct cacccaataa agaagaaagt cctaagaaaa ccaaaacaga agaggatgaa
     1981 acaagtgaag atgctaactg tcttgctttg agtggacatg ataaaacaga gacaaaggaa
     2041 caagttgatc tggagacaag tgcggttcaa tcagaaactg ttccggcatc ggcttctctg
     2101 ttggcctctc agaaaacatc cagtacagac ctttctgata tccctgctct ccctgcaaat
     2161 cctattcctg ttatcaagaa ttcaataaaa ctgagactga atcggtaaaa ccacctcagg
     2221 gtccataaac agtatctgcc aactcaaccc gttgtctcca gatgcttaaa caaaggaaag
     2281 aaagaaagaa aggaaaagag gagattggag ggacaagact agacctgact gacagtgggt
     2341 ttagctgttt ggtggcctcc ctgccttggg ctcatgagca cttgatcaga agtccaggtt
     2401 agtatgcgaa gccaggagtg ctattattac tgtgttagcg acagctgcat taactactca
     2461 gaaaaattac tgcctttaag aaggaaacaa aacaaaaccc tcgagctatg tttgtatcca
     2521 taactgacat ccggatcgcg cctctgtgtg ctgcattgtt tggaaaactg caatacaagc
     2581 tggcagaaga actcctcatt ctgatgatgc acttttatgt attttttttt aattagaaag
     2641 tagaactaat tttagatttt cagcttaatg gattttcaat tttttttccc caaagaattt
     2701 tctttacaat tagtctttaa attggatacg ttgtgcattg gtgtaccatt ctgtcccaga
     2761 aagggcagga ggacaccgag ctcagcccag tccttacggg cagctgtagc ccttagggtg
     2821 aattgtcaat gctaaggtat actttggaca ctgaaagaag aattaggcga tacttggttt
     2881 tgatgaggtt atgattaagc agtatatatt ccttttattt atagagttgt tttatagtgc
     2941 atacaaatca gcattcggcc aacaagtgtg gtctttgagc tttcgcaagc tctgttcttt
     3001 tgccttcagt ctgttagtct tcagaaagac agtgctcccc cacccccttt tattttattt
     3061 tttgcctttc ttttttcccc tttgcttgta tgcacaaggt aaggcttatt tcacagaaac
     3121 cagaatgcca gtattttcct aagccatgac atgtaacctt gaccctgtgg ctgcgtgaca
     3181 cagacactaa ctttggtccc atggctagaa cttgagagtg actgaagcca tacctgtgaa
     3241 gcatccccgg aggcggccct ttgatctctg cgaggacttt tgtacactcc acacaactcc
     3301 tgttcctgtc ttagacaaat tgattttcat ttttaaaagt gggcaaaagg cattttcttc
     3361 cagattttta aactaatttt tatttttaac cagtttatca aaatttgtca gtgaatttta
     3421 catacaaaaa cattttaaaa atcatttcta gtaagcactt gacatttagt cagctttcca
     3481 cttttgaatt tttttttttg ttctatcaaa aattagaaat cttctttaaa gacaatgatt
     3541 tctcataatt aagtagcaga attctcgtcc atcttgtgac atctgacggg tgccagatgt
     3601 tgataaagtt actctttgtt aatctgggta aaacagacct gtagcagcag atctttgtat
     3661 gagcatggtt tttgaatcct tcatttcgct gcattctatc acacgtttgt gcattttcat
     3721 gttacactgc aattacttaa actctcccct gtccttccaa attaatttcc aaagttggag
     3781 tatagtcttt cccctgaagc tatgcattaa ttaaggcttt ctttaccact tacattgttt
     3841 atatacagtg ttctactctc cacctcttgc tctgcagtca ccttgccctt cctcccacca
     3901 tttgagtaaa gaagacggtc cgctaacagg tgacatgtac tggtgtctgt gtgtgtagct
     3961 tcagagttag attgacatca ccaggcacag atttagtctt gtcgttttgt ttacacattg
     4021 gggaaaaatt cagtttaata aacgttccat gtaactgcat ccaagtttca ccaggctgga
     4081 gacgtggatc ttttctgtgt agtgactttt tacttctagt ttccataacc tggagatcag
     4141 actgttgctt tcgcatgatg taagtagtgt ctcatgactg gagtttgctt tgttttatag
     4201 tatctgtact ccttgtattt ttcaagagct attttgtaaa cagatgatgt atttctccat
     4261 tgaaaa
//
