LOCUS       XM_006515594            6100 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus poly (A) polymerase alpha (Papola),
            transcript variant X5, mRNA.
ACCESSION   XM_006515594
VERSION     XM_006515594.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006515594.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6100
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..6100
                     /gene="Papola"
                     /gene_synonym="Pap; PapIII; Plap"
                     /note="poly (A) polymerase alpha; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 182 ESTs, 669 long SRA reads, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 28 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:18789"
                     /db_xref="MGI:MGI:109301"
     CDS             150..2327
                     /gene="Papola"
                     /gene_synonym="Pap; PapIII; Plap"
                     /codon_start=1
                     /product="poly(A) polymerase alpha isoform X5"
                     /protein_id="XP_006515657.1"
                     /db_xref="GeneID:18789"
                     /db_xref="MGI:MGI:109301"
                     /translation="MAPSSPLVPHFRFPRSGPVTTQGSQQTQPPQRHYGITSPISLAA
                     PKETDCLLTQKLIETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQS
                     VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEEVKDL
                     RAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGC
                     RVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPN
                     AIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAY
                     PQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLL
                     ASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKESPDREEFRTM
                     WVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKRKQLH
                     QLLPSHVLQKRKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGS
                     SQGRNSPAPAVTAASVTSIQASEVSVPQANSSESPGGPSSESIPQTATQPAISPPPKP
                     TVSRVVSSTRLVNPSPRPSGNTATKVPNPIVGVKRTSSPNKEESPKKTKTEEDETSED
                     ANCLALSGHDKTETKEQVDLETSAVQSETVPASASLLASQVKG"
ORIGIN      
        1 gcggaggggg aggggaggcg cacgggcgcc ccgggccgcg gcttccggcc cctcgggcgc
       61 ggggcccccg caggatcccc aagcggaacg gcgcccggcg cggactggcg ggccgcggct
      121 cccgggttcc ttcctgtccc ggtttcacca tggcgccgtc cagcccccta gttccccact
      181 tccgcttccc tcggagcggt ccagttacaa cgcagggatc acaacaaacg cagccaccac
      241 agaggcacta tggcattacc tctcctatca gcttagcggc ccccaaggag actgactgcc
      301 tactcacaca gaagctcatc gagacgctga agccctttgg ggtttttgaa gaagaagagg
      361 aactgcagcg caggatttta attttgggaa aattaaataa cctggtgaaa gaatggattc
      421 gagaaatcag tgaaagcaag aatctcccac aatctgtaat tgaaaatgtt ggagggaaga
      481 tttttacatt tggatcttac agactaggag tccacacgaa aggtgctgat attgatgcgt
      541 tgtgtgttgc accaagacat gttgatcgaa gtgacttttt cacctcattc tatgataaat
      601 tgaaattaca agaagaagtg aaagatttaa gagctgttga agaggcattt gtaccagtta
      661 tcaaactctg ttttgatgga atagagattg atattttgtt tgcaagatta gcactgcaga
      721 ctattccaga agatttggac ctacgagatg acagtctgct taaaaaccta gatataagat
      781 gcataagaag ccttaatggt tgcagggtaa ccgatgaaat tttacatcta gtaccaaaca
      841 ttgacaactt caggttaact ctgagagcca tcaaactgtg ggccaaacgg cacaacatct
      901 attccaatat attaggtttc ctcggtggtg tttcctgggc tatgctagta gcaagaactt
      961 gccagcttta tccaaatgca atagcatcaa ctcttgtaca taaatttttc ttggtatttt
     1021 ctaaatggga atggccaaat ccagtgctat tgaaacagcc tgaagaatgc aatcttaatt
     1081 tgcctgtgtg ggacccaagg gtaaacccca gtgataggta ccatcttatg cctataatta
     1141 caccagcata cccacagcag aactccacgt acaatgtgtc cgtttcaaca cggatggtca
     1201 tggttgagga gtttaaacaa ggtcttgcta tcacagatga aattttgctg agtaaggcag
     1261 agtggtccaa actttttgaa gctccaaact tctttcagaa gtacaagcat tatattgtac
     1321 ttctagcaag tgcgcccacg gaaaagcagc gtctggaatg ggtgggcttg gtggaatcaa
     1381 aaatccgcat cctggttgga agcttggaga agaatgagtt tattacactg gctcatgtga
     1441 atccccagtc atttccagcc cccaaagaaa gtcctgacag ggaagaattt cgcacaatgt
     1501 gggtgattgg gttagtgttt aaaaaaactg aaaactctga aaatctcagt gtcgacctca
     1561 cctatgatat ccagtctttc acagacacag tttataggca agcaataaac agcaaaatgt
     1621 ttgagttgga tatgaagatt gcagcaatgc atgtgaagag aaagcaactc catcagctgc
     1681 tgcctagtca cgtgcttcag aagaggaaga agcattcaac agaaggagtc aagttaacag
     1741 ctctgaatga cagcagcctt gacttgtcta tggacagtga taacagcatg tctgtgcctt
     1801 cacccaccag tgctatgaag accagtccat tgaatagttc tggcagctcc cagggcagaa
     1861 acagtcctgc tccagctgtg accgcagcat ctgtgaccag catccaggct tctgaggttt
     1921 ctgtaccgca agcaaattcc agtgaaagcc cagggggtcc atcgagcgaa agcattcctc
     1981 aaactgccac acagccagcc atttctccac caccaaagcc tacagtctcc agagttgtct
     2041 cctcaacacg actggtaaac ccatcgccta gaccttcagg aaacacagca acaaaagtcc
     2101 ctaatcctat agtaggagtc aagagaacgt cctcacccaa taaagaagaa agtcctaaga
     2161 aaaccaaaac agaagaggat gaaacaagtg aagatgctaa ctgtcttgct ttgagtggac
     2221 atgataaaac agagacaaag gaacaagttg atctggagac aagtgcggtt caatcagaaa
     2281 ctgttccggc atcggcttct ctgttggcct ctcaggtcaa aggctgagag tgaaacaaag
     2341 aacaaacagt gttccggacc tgtgtgcaag gctcagagag attttcattg tatttattca
     2401 ttcactatgg tgcttagctt aagtgctcct gaactgcctt tggctccctg atatttttaa
     2461 tttttaagat gtgtttcttt ttcagtttag tttttagtat tgattttatt tagttattct
     2521 gtagacagtc aataactcct tagagtaatt gactagcgtt agtgttggct gggacagttc
     2581 catatgcaca caagcagtct tgtcttgcta attcacaaac cttcaccttc tttatttttc
     2641 ttcttgaatc cttttaaact taaaccaaag tgtaggtcaa acgttgaccc aaaaatcagt
     2701 gtctcctcat agcatgtact aactagatta cctgaggcgc tgagctagct gccagccgtg
     2761 tactcacctg tggcttagag tctcagtgct tgtgggaaac acactctgcc atactctgcc
     2821 aacaccagtg ttctactcag tttctcaaag ttgtttgtct gtatgctttc cctcagcctc
     2881 agtagccaag aggtcatcga atgaggagtg tgcttgtgtt cctccaccac atgtttccca
     2941 ctctgctgca ctgattgatt acgtgcctgc agccatggcg ccccagtggg gttggctttg
     3001 aaagtgtttt tttgagtaga gtttttttat tcagttgtga aaggatttat aaaccagtca
     3061 gaccacccca gttacgctgt ttttagagaa tgtatcttgt gtcctgtgat tgagggaggg
     3121 cctttattgc ggagggtagt gtctaaatac agcagggcca cgtatttgag gtaatcacag
     3181 ataattggga gcagcttcag tttcgcttca gaataatcct tggttgaagg ccacaggaag
     3241 gagtagattg gctttgactt aactgttgct gaagctggct gagactaatg tgagactaat
     3301 aaatgctctc aacttctatg cctgtgtgga aacgtctcat gaaacatttt atgattcatc
     3361 tctgtatttt ggaatattaa agatgccttg taataaaatt tgtgatacaa ttttttttaa
     3421 ttccctaaaa gttgagttaa attattgttc agttatatag ttaattttat aatttagagt
     3481 gtcagaaaat aactgctaaa tgctagctgt gtgtctcagg tgaatgtaag tgcttcctcc
     3541 acacgagggc actccgacac cacttcttgt tagagcagtt agtatggtaa actgggccca
     3601 acagtaatta agtgttattt tattaataat atctttctct ctcttgttct ttattttgtg
     3661 aaatatattt ttaagatttc tatttgaagt tacaaaataa tttttggtaa atcctgaaaa
     3721 tgttattatt tgaaaatgtc tgcaagtcta gttatgttta tttgcgctgc atattttcca
     3781 tttaaaattg atttttcttt ttaaatttgc ctcataataa agctgcatcc tttcctagga
     3841 gtaaggcggt gggacacgca tcccatttta agtcacagtg ctttaaactg tggtgtgttg
     3901 tttgctttca ttctcagaaa acatccagta cagacctttc tgatatccct gctctccctg
     3961 caaatcctat tcctgttatc aagaattcaa taaaactgag actgaatcgg taaaaccacc
     4021 tcagggtcca taaacagtat ctgccaactc aacccgttgt ctccagatgc ttaaacaaag
     4081 gaaagaaaga aagaaaggaa aagaggagat tggagggaca agactagacc tgactgacag
     4141 tgggtttagc tgtttggtgg cctccctgcc ttgggctcat gagcacttga tcagaagtcc
     4201 aggttagtat gcgaagccag gagtgctatt attactgtgt tagcgacagc tgcattaact
     4261 actcagaaaa attactgcct ttaagaagga aacaaaacaa aaccctcgag ctatgtttgt
     4321 atccataact gacatccgga tcgcgcctct gtgtgctgca ttgtttggaa aactgcaata
     4381 caagctggca gaagaactcc tcattctgat gatgcacttt tatgtatttt tttttaatta
     4441 gaaagtagaa ctaattttag attttcagct taatggattt tcaatttttt ttccccaaag
     4501 aattttcttt acaattagtc tttaaattgg atacgttgtg cattggtgta ccattctgtc
     4561 ccagaaaggg caggaggaca ccgagctcag cccagtcctt acgggcagct gtagccctta
     4621 gggtgaattg tcaatgctaa ggtatacttt ggacactgaa agaagaatta ggcgatactt
     4681 ggttttgatg aggttatgat taagcagtat atattccttt tatttataga gttgttttat
     4741 agtgcataca aatcagcatt cggccaacaa gtgtggtctt tgagctttcg caagctctgt
     4801 tcttttgcct tcagtctgtt agtcttcaga aagacagtgc tcccccaccc ccttttattt
     4861 tattttttgc ctttcttttt tcccctttgc ttgtatgcac aaggtaaggc ttatttcaca
     4921 gaaaccagaa tgccagtatt ttcctaagcc atgacatgta accttgaccc tgtggctgcg
     4981 tgacacagac actaactttg gtcccatggc tagaacttga gagtgactga agccatacct
     5041 gtgaagcatc cccggaggcg gccctttgat ctctgcgagg acttttgtac actccacaca
     5101 actcctgttc ctgtcttaga caaattgatt ttcattttta aaagtgggca aaaggcattt
     5161 tcttccagat ttttaaacta atttttattt ttaaccagtt tatcaaaatt tgtcagtgaa
     5221 ttttacatac aaaaacattt taaaaatcat ttctagtaag cacttgacat ttagtcagct
     5281 ttccactttt gaattttttt ttttgttcta tcaaaaatta gaaatcttct ttaaagacaa
     5341 tgatttctca taattaagta gcagaattct cgtccatctt gtgacatctg acgggtgcca
     5401 gatgttgata aagttactct ttgttaatct gggtaaaaca gacctgtagc agcagatctt
     5461 tgtatgagca tggtttttga atccttcatt tcgctgcatt ctatcacacg tttgtgcatt
     5521 ttcatgttac actgcaatta cttaaactct cccctgtcct tccaaattaa tttccaaagt
     5581 tggagtatag tctttcccct gaagctatgc attaattaag gctttcttta ccacttacat
     5641 tgtttatata cagtgttcta ctctccacct cttgctctgc agtcaccttg cccttcctcc
     5701 caccatttga gtaaagaaga cggtccgcta acaggtgaca tgtactggtg tctgtgtgtg
     5761 tagcttcaga gttagattga catcaccagg cacagattta gtcttgtcgt tttgtttaca
     5821 cattggggaa aaattcagtt taataaacgt tccatgtaac tgcatccaag tttcaccagg
     5881 ctggagacgt ggatcttttc tgtgtagtga ctttttactt ctagtttcca taacctggag
     5941 atcagactgt tgctttcgca tgatgtaagt agtgtctcat gactggagtt tgctttgttt
     6001 tatagtatct gtactccttg tatttttcaa gagctatttt gtaaacagat gatgtatttc
     6061 tccattgaaa acacaataaa aaaaaaaaca gcacaaatcc
//
