LOCUS       XM_036157538            5294 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein associated with LIN7 1, MAGUK
            family member (Pals1), transcript variant X5, mRNA.
ACCESSION   XM_036157538
VERSION     XM_036157538.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5294
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..5294
                     /gene="Pals1"
                     /gene_synonym="3830420B02Rik; Mpp5"
                     /note="protein associated with LIN7 1, MAGUK family
                     member; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 20 ESTs, 959 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 18 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:56217"
                     /db_xref="MGI:MGI:1927339"
     CDS             1133..2338
                     /gene="Pals1"
                     /gene_synonym="3830420B02Rik; Mpp5"
                     /codon_start=1
                     /product="protein PALS1 isoform X3"
                     /protein_id="XP_036013431.1"
                     /db_xref="GeneID:56217"
                     /db_xref="MGI:MGI:1927339"
                     /translation="MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVF
                     DLLSDMHGTLTFVLIPSQQIKPPPAKETVIHVKAHFDYDPSDDPYVPCRELGLSFQKG
                     DILHVISQEDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGK
                     LWCAKKNKKKRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQ
                     NELRQRLMNKEKDRFASAVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAAGKFIEHGE
                     FEKNLYGTSIDSVRQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRAL
                     LAKEGKNPKPEELREIIEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRLINKLDTEP
                     QWVPSTWLR"
ORIGIN      
        1 ctcgaggagg agttgctggc gacggcggcg acggaggagg ctggcgaaaa aagaaagcta
       61 acctgaatat tgggagagga aaaaaacaga gaagagaaat aaggatagaa gaaaagattt
      121 tccagtttga ataatatttc cctcatggat acatttcata gcattattat gtgatatgag
      181 aagttatttt tctttctttg aagtaacatg gattttatac tacagaatca agagaattgg
      241 ctttatagca aattttgata tataaaaagt ggtacaggtt tttatagata accatgacaa
      301 catcatatat gaatgggcat gtaacagagg aatcagacag cggaataaaa aatcttgatc
      361 ttgcatcacc agaggaatat ccgaagcacc gagagatggc tgttgactgc cctggagatt
      421 tgggcaccag aatgatgcca gtgcgaagaa gtgcacagtt agagcggatt cgacaacaac
      481 aggaggatat gagacgtagg cgcgaagagg aagggaaaaa gcaagaactt gacctaaatt
      541 cttccatgag acttaagaaa ctagctcaaa ttcctccaaa gactggaata gataacccta
      601 tatttgacac ggaagaagga attgttttag aaagtcctca ctatgctgtg aacatattag
      661 acgttgaaga cttgttctct tcacttaaac acatccaaca cactttggtt gattctcaga
      721 gccaggagga tatctcactg cttttacagc ttgtacaaaa cagagatttt cagaatgcat
      781 tcaagataca caatgctgtc acagtacaca tgagcaaggc cagccctccg tttcctctta
      841 tcgccaatgt acaagacctt gtacaagagg tacaaactgt cttaaagcca gtccatcaga
      901 aggaaggaca agaactaact gccttgttga atgctccaca tattcaggca cttttactgg
      961 cccatgataa ggttgctgag caggaaatgc agctagagcc cattacagat gagagagttt
     1021 atgaaagtat cggccattac gggggagaaa ctgtaaaaat agttcgtata gaaaaggctc
     1081 gggatattcc attgatattg ggtgttttta gggtgccaca gttcgtaatg aaatggattc
     1141 tgtcatcata agccggatag tgaaaggagg cgccgcagag aagagtggcc tcctgcacga
     1201 aggagacgaa gttctggaga tcaacggcat tgaaatccgg ggcaaggatg tcaatgaggt
     1261 ttttgacttg ttgtctgata tgcatggtac tttgacattt gttctgattc ctagtcaaca
     1321 gatcaagccc cctcctgcca aagaaactgt aatccatgtg aaagctcatt ttgactatga
     1381 cccctcagat gacccttatg ttccatgtcg agagttaggg ctgtcttttc aaaaaggaga
     1441 tatacttcat gtgatcagtc aagaagatcc aaattggtgg caggcctata gagagggaga
     1501 cgaagataat cagcctctag ctggacttgt tccaggcaaa agctttcagc agcaaaggga
     1561 agccatgaag caaactatag aagaagataa ggagccagag aaatcaggaa aactgtggtg
     1621 tgcaaagaag aataaaaaga agaggaaaaa ggttttatat aatgccaata aaaatgatga
     1681 ttatgacaat gaagagatct taacgtatga ggaaatgtca ctttatcacc agccagcaaa
     1741 taggaaaaga cctatcatct tgatcggtcc acagaactgt ggccagaatg aactgcgcca
     1801 gagactaatg aataaggaaa aagaccgctt tgcatctgcc gttcctcata caactcggaa
     1861 taggcgagac catgaagtag ctgggagaga ttaccacttt gtttctcggc aagcatttga
     1921 agcagacata gcagctggca agttcattga acatggtgaa tttgagaaaa atctgtatgg
     1981 aaccagcata gactctgtac gacaagtaat caactctggc aagatatgtc tcttaagtct
     2041 tcgcacacag tccttgaaga ccctccggaa ttcagatttg aaaccatata tcatcttcat
     2101 tgcaccacct tcacaagaga gacttcgggc gttgttagcc aaggaaggca agaacccaaa
     2161 gcctgaagaa ttaagggaga tcattgagaa gacgagagag atggagcaga acaacggaca
     2221 ctacttcgac actgcaattg tgaattcaga tcttgataaa gcctatcagg aattgcttag
     2281 gctcattaac aaactggata ctgaacctca gtgggtgcca tccacctggc taaggtgaag
     2341 gaaaggactg ttctgtgtca tcatgatgaa ctttatttgg caaaccgcca acaggaggat
     2401 agccttaacg ctgagagttc atgtcttaaa ctagtgagaa aggtccatta ggcaatttgt
     2461 acataacact tcctgcacat tgctttaggg gaccttgact tgtttggaga ctgaaaatgg
     2521 aaactttctt cagagcattt ttgatttatc ctggtaaaac cttttgtttt cacctttctg
     2581 actctttgcc tctgggtcag atgtctataa aaaacatgta tgtatatatg caatagtcca
     2641 ttgtctcaca tagatatgaa tattaacatt atttaacatt taacttaaat gacttcatgg
     2701 gattgagaga aggggctgtg cttctgtgcg ctgagaataa cagtattttc ttaaacaact
     2761 gacttggtca tcagaaatat ttcttaaaaa agaaaagaaa aaaggtgcca ctttagtttg
     2821 gagcaacttt ttaagtttaa atttattggt tttatctttt cattctgaaa atcattccat
     2881 taaaagtact agttttgctg ggcatggaaa tgcacgcctt tagtcccaca ctcaagagac
     2941 agaggcaggt agagctctga gttcagggcc agactggttt acagagtgag ttccaggcca
     3001 gtcaagtcta cacagagaaa ccttgtctca aaaaaccaaa aataaaaaaa tagagaatgc
     3061 agcctccagt gtagttacaa gtatacaaaa gatgctgaca tttttaaaga tagaattttc
     3121 caaattactt tattaaattg tgatgatttg atagtcttga ctccttgttc tgataaagag
     3181 ttcatataaa actatgttga ccattaaaac ttcttccttg tgatgcaaat tttttttatg
     3241 tcagtgaaag gacataacac atttgacagt ttctgtattt tcatatctga gcacagagtt
     3301 gtatctatga ctgtgctata tagttatcaa actggaaatc agtactgtat actgatattt
     3361 aatagattaa taaatagttg tgttctgcat tggaataaag ttttatacat acatacacac
     3421 tgaggaaata ctgacaacta acttagagat cataaggaag taagtcattg agcattttag
     3481 aaaaggacat caggagtttt attaagcgtg tacagacaag tttttatcct aacagtcttc
     3541 cttgtgagtg aaatacagca gcttgctaaa tcttaaatgt tcatgctaac gggatttttg
     3601 tactgtctct ttagctatag ctttaaaatt gtctacaaat ccacaaagaa agttaccttg
     3661 tagtcgtctc aagcctttaa ggagaatgtt ctgtgtgaca accaacctca aatgtgaatg
     3721 tcttgatttt atgtagctac agaatttcat gttcccaaaa ctaaacactg gaatgacact
     3781 gatgtgtcac ttagcacaag cagttggtgt tgatgtcttg tcagtgctgt ttgtgtctga
     3841 tttctcttct ggataatctt attggaacaa atgtagagtg tttgtgatgt ctttttatgt
     3901 tcagttttgc atggcttttg tagttggctg gcaagtgtgt ctattagaaa tactttcaaa
     3961 ataattttcc ttaggaataa gcacattctt gggttgaggg aaggaatgct atgctatacg
     4021 gtctgaagtc tgaacactcc cagtttacag caggaaaagt taacgccttg tcagcactga
     4081 cggtcaggtc acttagcacg taagggatta aatctgtcca ggttttcact ggttttcccc
     4141 tcaggaatga aaggtagtct atggtcagta gagctttgtg atctgcgtgc cgaccaaaaa
     4201 tactgcctgg tgagacttgg tgaatacctg taaccctata ggaagatcta aagtttaagg
     4261 ctggtctaag ttacatcaga ctatctcaaa ataaataaat aaatatcttt ttttaatgag
     4321 aaagaaaagc atggatgaaa ggatgaatat tggatttaag taaagtttta agttagtgtc
     4381 agtggggcta tgtgctatca agactctcac acagaccttt acagcagagc ctatacccag
     4441 gcacttgcca tgccaccatg tagtttttga ctgagattct ccaggtcagc gagatcctat
     4501 actttacttg taagtcatga taggatagtg tacatcctga gcttttgtaa atcctaatgg
     4561 ttatgaatgt actaatgctc aacatagtcc taaacagtga aaagttagcc tctgctttaa
     4621 aaaaaagcct tgttttacct gtgattgtat gccattaggg ccaattcaat ttcctatccc
     4681 tctgtggttc tgactggaaa ctgctgtgcc aggaagccct agccacttac agaaaaatcg
     4741 tggttggctg ggaacacagc tcagtcggta aagtatcgcc tagtatgcac aaaaccctgg
     4801 ctgtggcaga aagccagcat gggtgttcat gggtgtaatc ccagcacttg gaaagtggaa
     4861 gcagacagat ctgcagctca aggttaccat cagctacagg agaccctgtc tcaaaaacaa
     4921 agtaggtaac tccagctaat gacatgtccc cgggaaatcc aaacaaggaa gtaccttcat
     4981 ttttttcata cttaagaata aataggtagt actttgactt gtccacatta gctttctgtg
     5041 aaaatctagt gtatggatta ttttccttct ctcatggcct aaggagtaaa tattgataag
     5101 gaatgatttg aatgtaattt tttcgaatgt gtggaaaata tgaagcaggg atttatcctt
     5161 aatgaaggta gccactgaca tttgttgttg atctcccttt gtactgtctt gtttctgcac
     5221 tcgtcatttt gagatattat actgcacaat gtattataaa aataaaaagt aaaactatat
     5281 ttcaaattgt aaaa
//
