LOCUS       XM_030246824            5089 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein associated with LIN7 1, MAGUK
            family member (Pals1), transcript variant X3, mRNA.
ACCESSION   XM_030246824
VERSION     XM_030246824.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246824.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5089
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..5089
                     /gene="Pals1"
                     /gene_synonym="3830420B02Rik; Mpp5"
                     /note="protein associated with LIN7 1, MAGUK family
                     member; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 27 ESTs, 1003 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 22 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:56217"
                     /db_xref="MGI:MGI:1927339"
     CDS             208..2133
                     /gene="Pals1"
                     /gene_synonym="3830420B02Rik; Mpp5"
                     /codon_start=1
                     /product="protein PALS1 isoform X2"
                     /protein_id="XP_030102684.1"
                     /db_xref="GeneID:56217"
                     /db_xref="MGI:MGI:1927339"
                     /translation="MAVDCPGDLGTRMMPVRRSAQLERIRQQQEDMRRRREEEGKKQE
                     LDLNSSMRLKKLAQIPPKTGIDNPIFDTEEGIVLESPHYAVNILDVEDLFSSLKHIQH
                     TLVDSQSQEDISLLLQLVQNRDFQNAFKIHNAVTVHMSKASPPFPLIANVQDLVQEVQ
                     TVLKPVHQKEGQELTALLNAPHIQALLLAHDKVAEQEMQLEPITDERVYESIGHYGGE
                     TVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR
                     GKDVNEVFDLLSDMHGTLTFVLIPSQQIKPPPAKETVIHVKAHFDYDPSDDPYVPCRE
                     LGLSFQKGDILHVISQEDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIEED
                     KEPEKSGKLWCAKKNKKKRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIIL
                     IGPQNCGQNELRQRLMNKEKDRFASAVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAA
                     GKFIEHGEFEKNLYGTSIDSVRQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPP
                     SQERLRALLAKEGKNPKPEELREIIEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRL
                     INKLDTEPQWVPSTWLR"
ORIGIN      
        1 gggcgcgtgc gcggtctcgc gtcagccgcg ggggccggtc tcgcgcggcc tcgaggagga
       61 gttgctggcg acggcggcga cggaggaggc tggcgaaaaa agaaagctaa cctgaatatt
      121 gggagaggaa aaaaacagag aagagaaata aggatagaag aaaagatttt ccagtttgaa
      181 taataggaat atccgaagca ccgagagatg gctgttgact gccctggaga tttgggcacc
      241 agaatgatgc cagtgcgaag aagtgcacag ttagagcgga ttcgacaaca acaggaggat
      301 atgagacgta ggcgcgaaga ggaagggaaa aagcaagaac ttgacctaaa ttcttccatg
      361 agacttaaga aactagctca aattcctcca aagactggaa tagataaccc tatatttgac
      421 acggaagaag gaattgtttt agaaagtcct cactatgctg tgaacatatt agacgttgaa
      481 gacttgttct cttcacttaa acacatccaa cacactttgg ttgattctca gagccaggag
      541 gatatctcac tgcttttaca gcttgtacaa aacagagatt ttcagaatgc attcaagata
      601 cacaatgctg tcacagtaca catgagcaag gccagccctc cgtttcctct tatcgccaat
      661 gtacaagacc ttgtacaaga ggtacaaact gtcttaaagc cagtccatca gaaggaagga
      721 caagaactaa ctgccttgtt gaatgctcca catattcagg cacttttact ggcccatgat
      781 aaggttgctg agcaggaaat gcagctagag cccattacag atgagagagt ttatgaaagt
      841 atcggccatt acgggggaga aactgtaaaa atagttcgta tagaaaaggc tcgggatatt
      901 ccattgggtg ccacagttcg taatgaaatg gattctgtca tcataagccg gatagtgaaa
      961 ggaggcgccg cagagaagag tggcctcctg cacgaaggag acgaagttct ggagatcaac
     1021 ggcattgaaa tccggggcaa ggatgtcaat gaggtttttg acttgttgtc tgatatgcat
     1081 ggtactttga catttgttct gattcctagt caacagatca agccccctcc tgccaaagaa
     1141 actgtaatcc atgtgaaagc tcattttgac tatgacccct cagatgaccc ttatgttcca
     1201 tgtcgagagt tagggctgtc ttttcaaaaa ggagatatac ttcatgtgat cagtcaagaa
     1261 gatccaaatt ggtggcaggc ctatagagag ggagacgaag ataatcagcc tctagctgga
     1321 cttgttccag gcaaaagctt tcagcagcaa agggaagcca tgaagcaaac tatagaagaa
     1381 gataaggagc cagagaaatc aggaaaactg tggtgtgcaa agaagaataa aaagaagagg
     1441 aaaaaggttt tatataatgc caataaaaat gatgattatg acaatgaaga gatcttaacg
     1501 tatgaggaaa tgtcacttta tcaccagcca gcaaatagga aaagacctat catcttgatc
     1561 ggtccacaga actgtggcca gaatgaactg cgccagagac taatgaataa ggaaaaagac
     1621 cgctttgcat ctgccgttcc tcatacaact cggaataggc gagaccatga agtagctggg
     1681 agagattacc actttgtttc tcggcaagca tttgaagcag acatagcagc tggcaagttc
     1741 attgaacatg gtgaatttga gaaaaatctg tatggaacca gcatagactc tgtacgacaa
     1801 gtaatcaact ctggcaagat atgtctctta agtcttcgca cacagtcctt gaagaccctc
     1861 cggaattcag atttgaaacc atatatcatc ttcattgcac caccttcaca agagagactt
     1921 cgggcgttgt tagccaagga aggcaagaac ccaaagcctg aagaattaag ggagatcatt
     1981 gagaagacga gagagatgga gcagaacaac ggacactact tcgacactgc aattgtgaat
     2041 tcagatcttg ataaagccta tcaggaattg cttaggctca ttaacaaact ggatactgaa
     2101 cctcagtggg tgccatccac ctggctaagg tgaaggaaag gactgttctg tgtcatcatg
     2161 atgaacttta tttggcaaac cgccaacagg aggatagcct taacgctgag agttcatgtc
     2221 ttaaactagt gagaaaggtc cattaggcaa tttgtacata acacttcctg cacattgctt
     2281 taggggacct tgacttgttt ggagactgaa aatggaaact ttcttcagag catttttgat
     2341 ttatcctggt aaaacctttt gttttcacct ttctgactct ttgcctctgg gtcagatgtc
     2401 tataaaaaac atgtatgtat atatgcaata gtccattgtc tcacatagat atgaatatta
     2461 acattattta acatttaact taaatgactt catgggattg agagaagggg ctgtgcttct
     2521 gtgcgctgag aataacagta ttttcttaaa caactgactt ggtcatcaga aatatttctt
     2581 aaaaaagaaa agaaaaaagg tgccacttta gtttggagca actttttaag tttaaattta
     2641 ttggttttat cttttcattc tgaaaatcat tccattaaaa gtactagttt tgctgggcat
     2701 ggaaatgcac gcctttagtc ccacactcaa gagacagagg caggtagagc tctgagttca
     2761 gggccagact ggtttacaga gtgagttcca ggccagtcaa gtctacacag agaaaccttg
     2821 tctcaaaaaa ccaaaaataa aaaaatagag aatgcagcct ccagtgtagt tacaagtata
     2881 caaaagatgc tgacattttt aaagatagaa ttttccaaat tactttatta aattgtgatg
     2941 atttgatagt cttgactcct tgttctgata aagagttcat ataaaactat gttgaccatt
     3001 aaaacttctt ccttgtgatg caaatttttt ttatgtcagt gaaaggacat aacacatttg
     3061 acagtttctg tattttcata tctgagcaca gagttgtatc tatgactgtg ctatatagtt
     3121 atcaaactgg aaatcagtac tgtatactga tatttaatag attaataaat agttgtgttc
     3181 tgcattggaa taaagtttta tacatacata cacactgagg aaatactgac aactaactta
     3241 gagatcataa ggaagtaagt cattgagcat tttagaaaag gacatcagga gttttattaa
     3301 gcgtgtacag acaagttttt atcctaacag tcttccttgt gagtgaaata cagcagcttg
     3361 ctaaatctta aatgttcatg ctaacgggat ttttgtactg tctctttagc tatagcttta
     3421 aaattgtcta caaatccaca aagaaagtta ccttgtagtc gtctcaagcc tttaaggaga
     3481 atgttctgtg tgacaaccaa cctcaaatgt gaatgtcttg attttatgta gctacagaat
     3541 ttcatgttcc caaaactaaa cactggaatg acactgatgt gtcacttagc acaagcagtt
     3601 ggtgttgatg tcttgtcagt gctgtttgtg tctgatttct cttctggata atcttattgg
     3661 aacaaatgta gagtgtttgt gatgtctttt tatgttcagt tttgcatggc ttttgtagtt
     3721 ggctggcaag tgtgtctatt agaaatactt tcaaaataat tttccttagg aataagcaca
     3781 ttcttgggtt gagggaagga atgctatgct atacggtctg aagtctgaac actcccagtt
     3841 tacagcagga aaagttaacg ccttgtcagc actgacggtc aggtcactta gcacgtaagg
     3901 gattaaatct gtccaggttt tcactggttt tcccctcagg aatgaaaggt agtctatggt
     3961 cagtagagct ttgtgatctg cgtgccgacc aaaaatactg cctggtgaga cttggtgaat
     4021 acctgtaacc ctataggaag atctaaagtt taaggctggt ctaagttaca tcagactatc
     4081 tcaaaataaa taaataaata tcttttttta atgagaaaga aaagcatgga tgaaaggatg
     4141 aatattggat ttaagtaaag ttttaagtta gtgtcagtgg ggctatgtgc tatcaagact
     4201 ctcacacaga cctttacagc agagcctata cccaggcact tgccatgcca ccatgtagtt
     4261 tttgactgag attctccagg tcagcgagat cctatacttt acttgtaagt catgatagga
     4321 tagtgtacat cctgagcttt tgtaaatcct aatggttatg aatgtactaa tgctcaacat
     4381 agtcctaaac agtgaaaagt tagcctctgc tttaaaaaaa agccttgttt tacctgtgat
     4441 tgtatgccat tagggccaat tcaatttcct atccctctgt ggttctgact ggaaactgct
     4501 gtgccaggaa gccctagcca cttacagaaa aatcgtggtt ggctgggaac acagctcagt
     4561 cggtaaagta tcgcctagta tgcacaaaac cctggctgtg gcagaaagcc agcatgggtg
     4621 ttcatgggtg taatcccagc acttggaaag tggaagcaga cagatctgca gctcaaggtt
     4681 accatcagct acaggagacc ctgtctcaaa aacaaagtag gtaactccag ctaatgacat
     4741 gtccccggga aatccaaaca aggaagtacc ttcatttttt tcatacttaa gaataaatag
     4801 gtagtacttt gacttgtcca cattagcttt ctgtgaaaat ctagtgtatg gattattttc
     4861 cttctctcat ggcctaagga gtaaatattg ataaggaatg atttgaatgt aattttttcg
     4921 aatgtgtgga aaatatgaag cagggattta tccttaatga aggtagccac tgacatttgt
     4981 tgttgatctc cctttgtact gtcttgtttc tgcactcgtc attttgagat attatactgc
     5041 acaatgtatt ataaaaataa aaagtaaaac tatatttcaa attgtaaaa
//
