LOCUS       XM_006516098            5175 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein associated with LIN7 1, MAGUK
            family member (Pals1), transcript variant X2, mRNA.
ACCESSION   XM_006516098
VERSION     XM_006516098.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006516098.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5175
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..5175
                     /gene="Pals1"
                     /gene_synonym="3830420B02Rik; Mpp5"
                     /note="protein associated with LIN7 1, MAGUK family
                     member; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 27 ESTs, 1001 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 20 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:56217"
                     /db_xref="MGI:MGI:1927339"
     CDS             294..2219
                     /gene="Pals1"
                     /gene_synonym="3830420B02Rik; Mpp5"
                     /codon_start=1
                     /product="protein PALS1 isoform X2"
                     /protein_id="XP_006516161.1"
                     /db_xref="GeneID:56217"
                     /db_xref="MGI:MGI:1927339"
                     /translation="MAVDCPGDLGTRMMPVRRSAQLERIRQQQEDMRRRREEEGKKQE
                     LDLNSSMRLKKLAQIPPKTGIDNPIFDTEEGIVLESPHYAVNILDVEDLFSSLKHIQH
                     TLVDSQSQEDISLLLQLVQNRDFQNAFKIHNAVTVHMSKASPPFPLIANVQDLVQEVQ
                     TVLKPVHQKEGQELTALLNAPHIQALLLAHDKVAEQEMQLEPITDERVYESIGHYGGE
                     TVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR
                     GKDVNEVFDLLSDMHGTLTFVLIPSQQIKPPPAKETVIHVKAHFDYDPSDDPYVPCRE
                     LGLSFQKGDILHVISQEDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIEED
                     KEPEKSGKLWCAKKNKKKRKKVLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIIL
                     IGPQNCGQNELRQRLMNKEKDRFASAVPHTTRNRRDHEVAGRDYHFVSRQAFEADIAA
                     GKFIEHGEFEKNLYGTSIDSVRQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPP
                     SQERLRALLAKEGKNPKPEELREIIEKTREMEQNNGHYFDTAIVNSDLDKAYQELLRL
                     INKLDTEPQWVPSTWLR"
ORIGIN      
        1 ggcgacggag gaggctggcg gtgaggaggg ggcggggact ggagactccg aggtgggagg
       61 aatcgggagt ttctggattc tttatccagt gttttgaggg ccgccagacg gagggctgtt
      121 gcttgggctg cgttgaggag cgagggaggg agagaggatc ggcggccgcc ggggcttgga
      181 gaaaaaagaa agctaacctg aatattggga gaggaaaaaa acagagaaga gaaataagga
      241 tagaagaaaa gattttccag tttgaataat aggaatatcc gaagcaccga gagatggctg
      301 ttgactgccc tggagatttg ggcaccagaa tgatgccagt gcgaagaagt gcacagttag
      361 agcggattcg acaacaacag gaggatatga gacgtaggcg cgaagaggaa gggaaaaagc
      421 aagaacttga cctaaattct tccatgagac ttaagaaact agctcaaatt cctccaaaga
      481 ctggaataga taaccctata tttgacacgg aagaaggaat tgttttagaa agtcctcact
      541 atgctgtgaa catattagac gttgaagact tgttctcttc acttaaacac atccaacaca
      601 ctttggttga ttctcagagc caggaggata tctcactgct tttacagctt gtacaaaaca
      661 gagattttca gaatgcattc aagatacaca atgctgtcac agtacacatg agcaaggcca
      721 gccctccgtt tcctcttatc gccaatgtac aagaccttgt acaagaggta caaactgtct
      781 taaagccagt ccatcagaag gaaggacaag aactaactgc cttgttgaat gctccacata
      841 ttcaggcact tttactggcc catgataagg ttgctgagca ggaaatgcag ctagagccca
      901 ttacagatga gagagtttat gaaagtatcg gccattacgg gggagaaact gtaaaaatag
      961 ttcgtataga aaaggctcgg gatattccat tgggtgccac agttcgtaat gaaatggatt
     1021 ctgtcatcat aagccggata gtgaaaggag gcgccgcaga gaagagtggc ctcctgcacg
     1081 aaggagacga agttctggag atcaacggca ttgaaatccg gggcaaggat gtcaatgagg
     1141 tttttgactt gttgtctgat atgcatggta ctttgacatt tgttctgatt cctagtcaac
     1201 agatcaagcc ccctcctgcc aaagaaactg taatccatgt gaaagctcat tttgactatg
     1261 acccctcaga tgacccttat gttccatgtc gagagttagg gctgtctttt caaaaaggag
     1321 atatacttca tgtgatcagt caagaagatc caaattggtg gcaggcctat agagagggag
     1381 acgaagataa tcagcctcta gctggacttg ttccaggcaa aagctttcag cagcaaaggg
     1441 aagccatgaa gcaaactata gaagaagata aggagccaga gaaatcagga aaactgtggt
     1501 gtgcaaagaa gaataaaaag aagaggaaaa aggttttata taatgccaat aaaaatgatg
     1561 attatgacaa tgaagagatc ttaacgtatg aggaaatgtc actttatcac cagccagcaa
     1621 ataggaaaag acctatcatc ttgatcggtc cacagaactg tggccagaat gaactgcgcc
     1681 agagactaat gaataaggaa aaagaccgct ttgcatctgc cgttcctcat acaactcgga
     1741 ataggcgaga ccatgaagta gctgggagag attaccactt tgtttctcgg caagcatttg
     1801 aagcagacat agcagctggc aagttcattg aacatggtga atttgagaaa aatctgtatg
     1861 gaaccagcat agactctgta cgacaagtaa tcaactctgg caagatatgt ctcttaagtc
     1921 ttcgcacaca gtccttgaag accctccgga attcagattt gaaaccatat atcatcttca
     1981 ttgcaccacc ttcacaagag agacttcggg cgttgttagc caaggaaggc aagaacccaa
     2041 agcctgaaga attaagggag atcattgaga agacgagaga gatggagcag aacaacggac
     2101 actacttcga cactgcaatt gtgaattcag atcttgataa agcctatcag gaattgctta
     2161 ggctcattaa caaactggat actgaacctc agtgggtgcc atccacctgg ctaaggtgaa
     2221 ggaaaggact gttctgtgtc atcatgatga actttatttg gcaaaccgcc aacaggagga
     2281 tagccttaac gctgagagtt catgtcttaa actagtgaga aaggtccatt aggcaatttg
     2341 tacataacac ttcctgcaca ttgctttagg ggaccttgac ttgtttggag actgaaaatg
     2401 gaaactttct tcagagcatt tttgatttat cctggtaaaa ccttttgttt tcacctttct
     2461 gactctttgc ctctgggtca gatgtctata aaaaacatgt atgtatatat gcaatagtcc
     2521 attgtctcac atagatatga atattaacat tatttaacat ttaacttaaa tgacttcatg
     2581 ggattgagag aaggggctgt gcttctgtgc gctgagaata acagtatttt cttaaacaac
     2641 tgacttggtc atcagaaata tttcttaaaa aagaaaagaa aaaaggtgcc actttagttt
     2701 ggagcaactt tttaagttta aatttattgg ttttatcttt tcattctgaa aatcattcca
     2761 ttaaaagtac tagttttgct gggcatggaa atgcacgcct ttagtcccac actcaagaga
     2821 cagaggcagg tagagctctg agttcagggc cagactggtt tacagagtga gttccaggcc
     2881 agtcaagtct acacagagaa accttgtctc aaaaaaccaa aaataaaaaa atagagaatg
     2941 cagcctccag tgtagttaca agtatacaaa agatgctgac atttttaaag atagaatttt
     3001 ccaaattact ttattaaatt gtgatgattt gatagtcttg actccttgtt ctgataaaga
     3061 gttcatataa aactatgttg accattaaaa cttcttcctt gtgatgcaaa ttttttttat
     3121 gtcagtgaaa ggacataaca catttgacag tttctgtatt ttcatatctg agcacagagt
     3181 tgtatctatg actgtgctat atagttatca aactggaaat cagtactgta tactgatatt
     3241 taatagatta ataaatagtt gtgttctgca ttggaataaa gttttataca tacatacaca
     3301 ctgaggaaat actgacaact aacttagaga tcataaggaa gtaagtcatt gagcatttta
     3361 gaaaaggaca tcaggagttt tattaagcgt gtacagacaa gtttttatcc taacagtctt
     3421 ccttgtgagt gaaatacagc agcttgctaa atcttaaatg ttcatgctaa cgggattttt
     3481 gtactgtctc tttagctata gctttaaaat tgtctacaaa tccacaaaga aagttacctt
     3541 gtagtcgtct caagccttta aggagaatgt tctgtgtgac aaccaacctc aaatgtgaat
     3601 gtcttgattt tatgtagcta cagaatttca tgttcccaaa actaaacact ggaatgacac
     3661 tgatgtgtca cttagcacaa gcagttggtg ttgatgtctt gtcagtgctg tttgtgtctg
     3721 atttctcttc tggataatct tattggaaca aatgtagagt gtttgtgatg tctttttatg
     3781 ttcagttttg catggctttt gtagttggct ggcaagtgtg tctattagaa atactttcaa
     3841 aataattttc cttaggaata agcacattct tgggttgagg gaaggaatgc tatgctatac
     3901 ggtctgaagt ctgaacactc ccagtttaca gcaggaaaag ttaacgcctt gtcagcactg
     3961 acggtcaggt cacttagcac gtaagggatt aaatctgtcc aggttttcac tggttttccc
     4021 ctcaggaatg aaaggtagtc tatggtcagt agagctttgt gatctgcgtg ccgaccaaaa
     4081 atactgcctg gtgagacttg gtgaatacct gtaaccctat aggaagatct aaagtttaag
     4141 gctggtctaa gttacatcag actatctcaa aataaataaa taaatatctt tttttaatga
     4201 gaaagaaaag catggatgaa aggatgaata ttggatttaa gtaaagtttt aagttagtgt
     4261 cagtggggct atgtgctatc aagactctca cacagacctt tacagcagag cctataccca
     4321 ggcacttgcc atgccaccat gtagtttttg actgagattc tccaggtcag cgagatccta
     4381 tactttactt gtaagtcatg ataggatagt gtacatcctg agcttttgta aatcctaatg
     4441 gttatgaatg tactaatgct caacatagtc ctaaacagtg aaaagttagc ctctgcttta
     4501 aaaaaaagcc ttgttttacc tgtgattgta tgccattagg gccaattcaa tttcctatcc
     4561 ctctgtggtt ctgactggaa actgctgtgc caggaagccc tagccactta cagaaaaatc
     4621 gtggttggct gggaacacag ctcagtcggt aaagtatcgc ctagtatgca caaaaccctg
     4681 gctgtggcag aaagccagca tgggtgttca tgggtgtaat cccagcactt ggaaagtgga
     4741 agcagacaga tctgcagctc aaggttacca tcagctacag gagaccctgt ctcaaaaaca
     4801 aagtaggtaa ctccagctaa tgacatgtcc ccgggaaatc caaacaagga agtaccttca
     4861 tttttttcat acttaagaat aaataggtag tactttgact tgtccacatt agctttctgt
     4921 gaaaatctag tgtatggatt attttccttc tctcatggcc taaggagtaa atattgataa
     4981 ggaatgattt gaatgtaatt ttttcgaatg tgtggaaaat atgaagcagg gatttatcct
     5041 taatgaaggt agccactgac atttgttgtt gatctccctt tgtactgtct tgtttctgca
     5101 ctcgtcattt tgagatatta tactgcacaa tgtattataa aaataaaaag taaaactata
     5161 tttcaaattg taaaa
//
