LOCUS       NM_001163836            3208 bp    mRNA    linear   ROD 20-MAY-2024
DEFINITION  Mus musculus poly(A) binding protein, cytoplasmic 6 (Pabpc6), mRNA.
ACCESSION   NM_001163836 XR_035111 XR_035112
VERSION     NM_001163836.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3208)
  AUTHORS   Kaku,Y., Isono,Y., Tanaka,H., Kobayashi,T., Kanemori,Y. and
            Kashiwabara,S.I.
  TITLE     Intronless Pabpc6 encodes a testis-specific, cytoplasmic
            poly(A)-binding protein but is dispensable for spermatogenesis in
            the mousedagger
  JOURNAL   Biol Reprod 110 (4), 834-847 (2024)
   PUBMED   38281153
  REMARK    GeneRIF: Intronless Pabpc6 encodes a testis-specific, cytoplasmic
            poly(A)-binding protein but is dispensable for spermatogenesis in
            the mousedagger.
REFERENCE   2  (bases 1 to 3208)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC134446.4, AK016578.1 and AK029765.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK016578.1, BC113177.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-8                 AC134446.4         73272-73279         c
            9-2952              AK016578.1         2-2945
            2953-2953           AK029765.1         2935-2935
            2954-3208           AK016578.1         2947-3201
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 7.47 cM"
     gene            1..3208
                     /gene="Pabpc6"
                     /gene_synonym="4932702K14Rik; Pabpc3"
                     /note="poly(A) binding protein, cytoplasmic 6"
                     /db_xref="GeneID:67543"
                     /db_xref="MGI:MGI:1914793"
     exon            1..3208
                     /gene="Pabpc6"
                     /gene_synonym="4932702K14Rik; Pabpc3"
                     /inference="alignment:Splign:2.1.0"
     CDS             85..2016
                     /gene="Pabpc6"
                     /gene_synonym="4932702K14Rik; Pabpc3"
                     /note="poly A binding protein, cytoplasmic 1 pseudogene"
                     /codon_start=1
                     /product="poly(A) binding protein, cytoplasmic 3"
                     /protein_id="NP_001157308.1"
                     /db_xref="CCDS:CCDS49946.1"
                     /db_xref="GeneID:67543"
                     /db_xref="MGI:MGI:1914793"
                     /translation="MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYR
                     DRITRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIF
                     VKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNG
                     MFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPAL
                     SVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTEL
                     KHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAK
                     VTMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLSNQY
                     MQRMASTSAGPNPVVSPFQPAQGPSGYCMTATPTQSRRAYCAPNQTTQQGPSARGSAH
                     GTRAHPFQNMSSTIHPSHTMPSFSTSGPTTSQAIRHRTASTSTQMMGPHPAAAAAAAA
                     APATRTITQYKYTAGVRNPPQHPNTQPHVSTQRSAVPVQGKESLTASMLASAPPQAQK
                     QMLGEWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLESPECLHTKVDEAIAVLQAH
                     QAKETSQKAVSSVAGVPNA"
     regulatory      3166..3171
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pabpc6"
                     /gene_synonym="4932702K14Rik; Pabpc3"
                     /note="hexamer: AATAAA"
     polyA_site      3192
                     /gene="Pabpc6"
                     /gene_synonym="4932702K14Rik; Pabpc3"
                     /note="major polyA site"
ORIGIN      
        1 gggttcttgg cagttgaggg cctttccatt ccggttgcct tctgttcctg tgctgctcct
       61 gctccctgct cagcctttgc agacatgaac cccagcgacc ccagctactc tttggcttca
      121 ctctatgtgg gggacctgca tcccgacgtg accgaggcga tgctctatga gaagttcagc
      181 ccggcagggc ccatcctctc catccgggtg tacagggaca ggatcacccg ccgctcgctg
      241 ggctacgcgt ccgtcaactt ccagcagctg gaggacgccg agcgggcctt ggacaccatg
      301 aatttcgacg tgataaaggg caagccggtt cgcatcatgt ggtctcagcg ggacccgtcg
      361 ctgcgcaaga gcggagtagg gaacatattt gtgaaaaatc tggacagatc cattgacagt
      421 aaaacgctgt atgatacgtt ttctgccttt ggtaacatcc tttcctgtaa ggtggtgtgt
      481 gatgagaatg gctccaaggg ttacggcttt gtacacttcg agacacagga agaagctgaa
      541 cgagcaattg agaaaatgaa cgggatgttc ctaaatgacc acaaagtgtt cgttggtcgc
      601 tttaagtctc gtagagacag gcaggctgaa cttggagcca gggccaagga gttcaccaat
      661 gtttacatca agaatttggg agaagatatg gatgatgaga gactccagga tctatttggc
      721 agatttgggc ctgccttaag tgttaaagtc atgactgatg aaagtggaaa atccaaagga
      781 ttcggattcg taagctttga aaggcatgaa gatgcacgaa aggcagtgga agagatgaat
      841 ggaaaagacc tcaatggaaa acaaatttat gtaggtcgtg ctcagaaaaa ggtggaacga
      901 cagactgaac tgaagcacaa attcgggcag atgaagcaag ataagcacaa aattgaacgg
      961 gtaccacaag atagaagcgt cagatgcaaa ggtgttaacc tctatgtgaa aaaccttgat
     1021 gatggtatcg atgatgagcg tctccggaag gagttttccc cttttggtac gattactagt
     1081 gcaaaggtaa cgatggaggg tgggcgcagc aaagggtttg gttttgtatg tttttcctct
     1141 ccagaagaag ccaccaaagc tgttacagaa atgaatggta aaatagtggc caccaaacca
     1201 ctctacgtag ctttagctca acgcaaagag gagcgccagg ctcacctcag taaccagtac
     1261 atgcaaagaa tggcaagcac cagtgccggg cctaacccag tcgtcagccc tttccagcca
     1321 gcgcaggggc cgtcaggtta ctgcatgaca gctacaccaa ctcagagccg tagggcatac
     1381 tgtgctccta atcagactac tcagcaagga ccaagtgccc gtgggagtgc tcacggtacc
     1441 agagctcatc cattccaaaa catgtctagt accatccacc catcacatac tatgccatca
     1501 tttagtactt caggacccac tacctcacag gctatacgac atcgtactgc cagcacatcc
     1561 acacagatga tgggcccaca tcctgcagct gctgctgctg ctgcagctgc tcctgccacc
     1621 cgcacaatta cccagtataa atatactgct ggagtccgaa atccccctca gcatcctaat
     1681 acacagccac atgtcagcac gcagcggtct gctgttcctg tccaaggtaa agagtctttg
     1741 actgcctcca tgttggcctc tgctcctcct caagctcaaa agcaaatgtt aggggaatgg
     1801 ctcttctctc ttattcaggc catgcaccct gcccttgctg gtaaaatcac gggtatgctg
     1861 ttggaaattg ataatataga gctacgccac atgcttgagt ctccagagtg tctccacacc
     1921 aaagttgatg aagccatagc tgtactgcaa gctcaccaag ctaaagagac ttcacagaaa
     1981 gcagtcagca gtgttgctgg tgtcccaaat gcttaaagat gagcaggtga atgcataaaa
     2041 acccctgctt cactgaagaa aaatatctag acattgaaaa cccatgacaa caaaaagaaa
     2101 actagaaact aaatgaaagg gaaaggaact tataatctcc tgtgccaagt cagagtcagg
     2161 tctagtgagc aatgcaaagc ccaagccact tggtttaaga cagcagataa cagaaatagt
     2221 gacatttaag agcaaattaa tgttatcgac tttggggaaa tgattttctt tttaggaaag
     2281 tgcaaaaatt taaagcatct cttacttcag ttgtaattca aatagctcaa gatgtcattt
     2341 ctaagtaaca gaacttgtac ttgagcaagg accatgattt ggatcatagt atccttgctt
     2401 tactaaagct tccttaaaga gtaaaagtga aaaaaataaa ggcatcgctg ttggctaata
     2461 atacctctga gacttctaga aggctactca tgtcgtgtgg ccagctgtat ttccactcag
     2521 ttgttgccgg atacaaaaca catgccatct gtaattgaca accctgtcaa ttgatgtacc
     2581 aaagaaccgc cttcaactta gaagcttctg tccaaaacaa actacagaaa gtgaatttta
     2641 acagctgtca aaagttacct ccatagtctc tggacttcac tgatccactt tatagcatcg
     2701 aatgaactaa cttatgtaaa attatgtgcc ttcttcaaac tcaatctaac attcagaata
     2761 catttatgca ctggcatctt gctgtgtttt ggaagataca ggagtcttgg ttttttggaa
     2821 ctgtgttttg gtagaatgag aagctaaaac aaaagtatca gattattaaa agcatactat
     2881 ataaaaacat agagggagga aaaaagggaa gaagggagat agaagacttg gagatagagg
     2941 gagcagtttg gagggaagag ggttaatctg attttttttt caagccccga gaaaacccaa
     3001 acatatcagg aagacaggca tgataccctc tggagcagat atgagctaag tgggttctag
     3061 ggagggaaga gctgggtgag tggcctttct ccatacaaag agtgaggatt tgagtagaaa
     3121 agcaacataa caaaggggtt ggttttcaca aatagccatc tatacaataa agctgttttt
     3181 cacaaataca aattaatttt ttaagttt
//
