LOCUS       NM_053114               2434 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus poly(A) binding protein, cytoplasmic 5 (Pabpc5), mRNA.
ACCESSION   NM_053114
VERSION     NM_053114.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2434)
  AUTHORS   Blanco,P., Sargent,C.A., Boucher,C.A., Howell,G., Ross,M. and
            Affara,N.A.
  TITLE     A novel poly(A)-binding protein gene (PABPC5) maps to an X-specific
            subinterval in the Xq21.3/Yp11.2 homology block of the human sex
            chromosomes
  JOURNAL   Genomics 74 (1), 1-11 (2001)
   PUBMED   11374897
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK050551.1.
            
            On Apr 6, 2007 this sequence version replaced NM_053114.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK050551.1, BB654180.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2434              AK050551.1         3-2436
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 49.58 cM"
     gene            1..2434
                     /gene="Pabpc5"
                     /gene_synonym="C820015E17"
                     /note="poly(A) binding protein, cytoplasmic 5"
                     /db_xref="GeneID:93728"
                     /db_xref="MGI:MGI:2136401"
     exon            1..105
                     /gene="Pabpc5"
                     /gene_synonym="C820015E17"
                     /inference="alignment:Splign:2.1.0"
     exon            106..2434
                     /gene="Pabpc5"
                     /gene_synonym="C820015E17"
                     /inference="alignment:Splign:2.1.0"
     CDS             259..1404
                     /gene="Pabpc5"
                     /gene_synonym="C820015E17"
                     /codon_start=1
                     /product="polyadenylate-binding protein 5"
                     /protein_id="NP_444344.1"
                     /db_xref="CCDS:CCDS30369.1"
                     /db_xref="GeneID:93728"
                     /db_xref="MGI:MGI:2136401"
                     /translation="MSGEPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLR
                     FTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKS
                     GVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRA
                     IWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATFTNVFVKNFGDDIDDEKLNKLF
                     SEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKK
                     IERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM
                     EVGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQARHRW"
ORIGIN      
        1 aaaccagcct cgcgtcagag ctgagcacag cggcgcggct gccagtcagt ccctccggac
       61 ctgcggagag agcctcaggc tgcagaaatc accgcgcctc actcgcctca gcctcaacag
      121 tgatctgagt ctgcttttag cttcccttca cctgccttgg cttgtttctg ttcaagaaca
      181 gctgtttggc ctatagatta gaaaaagtgc accccctccc tactctgtcc caagagatca
      241 tcttctaagt gctcagagat gagtggggag cctaatactg ctggcaagaa aaagaagtac
      301 ctcaaggctg ccctgtatgt aggtgacttg gaccctgacg tcacagagga catgctctat
      361 aagaagttca gacctgctgg ccctctgcgc ttcactagaa tctgtcgtga cccagtgacc
      421 cgcagccccc tgggttatgg ttatgttaat ttccgctttc ctgcagatgc tgaatgggca
      481 ttgaacacaa tgaattttga tttaattaat ggtaaaccat ttcgcctcat gtggtcacag
      541 ccagatgacc gtttaagaaa gtctggagtt ggaaatatat tcatcaaaaa cttggataag
      601 accatagaca atagggcctt attttattta ttttcggctt ttgggaacat tctttcctgt
      661 aaagtcgtat gtgatgacaa tggctctaag ggttatgctt atgtccactt cgatagcctt
      721 gctgctgcca atagggctat ctggcacatg aatggagtgc ggctcaataa ccgccaggta
      781 tatgttggtc gattcaaatt tcctgaagag agagcagcag aagtcagaac cagagaaaga
      841 gcaacattta ccaatgtttt cgtaaaaaac tttggagatg acattgatga tgaaaaacta
      901 aacaaacttt tcagtgaata tgggccaact gagagtgtta aagtcataag agatgccact
      961 gggaaatcta aaggctttgg atttgtaaga tatgaaacac atgaagctgc ccaaaaggct
     1021 gtgctagaac tgcatggcaa gtcaatagat gggaaagtcc tatgtgtagg gagagcacag
     1081 aagaaaattg aacgcctggc tgaattaagg cggagatttg aacggctgaa attaaaagaa
     1141 aaaaataggc cttcaggagt gcctatctat attaagaact tggatgagac catcaatgat
     1201 gagaaactaa aggaggaatt ttcttcattt ggatcaatca gtcgagccaa agtgatgatg
     1261 gaagtgggac aaggaaaagg gtttggtgtt gtctgctttt cttcttttga agaggcgtgc
     1321 aaagcagtgg atgaaatgaa tggtcgcata ataggctcca agacattgca tgtcactctg
     1381 gggcaagcta ggcacaggtg gtgaaaatta ctatgagcaa tttgtttagc cttagccagt
     1441 gcctacatag cttgggctcc tttgtgacag aggttatttt ctctcaattc ataggtttgt
     1501 tttctttctt tttattttat ttatttattt tatgacactt tcttttggaa acaaagtata
     1561 catagaaaat cttgttcatt ttggtgacaa acataattta taaatgtaaa atgtcatttt
     1621 gtacaatttt tataagatct ttatccttag aataaaattt atcatcttta ttttttctaa
     1681 gtatcctgaa tgaggaaaat gattatattt tctttatttt cataatacta acttaatttc
     1741 ttctatgaaa atattcttaa gagattcctt atttctgatt ctggcacagt gaaaagtcaa
     1801 ccgttgcttt ttaaagaaaa agtgaatgga taggggccac ttaaaatttc tccataattt
     1861 cattttaaat tatgatttaa attgaatagt acttaaaaca tatgaggcat ttttccttta
     1921 ttttttgtat ctgtttttct tgtatcaagt gcacactaca gatttgttag caactttgac
     1981 cagttattgg gatttatctt tataaatatc acgttattgt ttcttaatca gtacttctaa
     2041 aaaaactgtt gcattgataa atatctattt aaaatgtgag ggtctcaaaa atatttgcca
     2101 agagatatat ttgaagatac tctaaaagta attcttaaca cttgttttca aaatgtgtat
     2161 aatgcataga ggtagactat gctaaattaa cagaaacatt tattagtgta ctaactcact
     2221 tttaccttta aacaccttat acactgctgc tgtaaaacta aaacatgttg tttcttgtca
     2281 tgtttgaata tatccactgg caaacactga catgtgtttt attaaggaat atgttttccc
     2341 ttatttaggt catacctttt catccattat gtgagaatca tcaactccaa ataattcttt
     2401 actaattcag actacttaaa atatgctgat tcac
//
