LOCUS       NM_001416287            6698 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus poly(A) binding protein, cytoplasmic 4-like (Pabpc4l),
            transcript variant 3, mRNA.
ACCESSION   NM_001416287 XM_011239969
VERSION     NM_001416287.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6698)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 6698)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC101968.11.
            
            On Jan 25, 2023 this sequence version replaced XM_011239969.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17253014.2013319.1,
                                           SRR13422601.515942.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164133, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-135               AC101968.11        6210-6344
            136-264             AC101968.11        6528-6656
            265-6698            AC101968.11        6872-13305
FEATURES             Location/Qualifiers
     source          1..6698
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 20.74 cM"
     gene            1..6698
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
                     /note="poly(A) binding protein, cytoplasmic 4-like"
                     /db_xref="GeneID:241989"
                     /db_xref="MGI:MGI:3643087"
     exon            1..135
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
                     /inference="alignment:Splign:2.1.0"
     exon            136..264
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
                     /inference="alignment:Splign:2.1.0"
     exon            265..6698
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4518..4523
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
                     /note="hexamer: AATAAA"
     polyA_site      4539
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
                     /note="major polyA site"
     regulatory      4725..4730
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
                     /note="hexamer: ACTAAA"
     polyA_site      4748
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
     regulatory      4875..4880
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
                     /note="hexamer: AATAAA"
     polyA_site      4898
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
     regulatory      5344..5349
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
                     /note="hexamer: CATAAA"
     polyA_site      5361
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
     regulatory      6676..6681
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
                     /note="hexamer: AATAAA"
     polyA_site      6698
                     /gene="Pabpc4l"
                     /gene_synonym="C330050A14Rik; EG241989"
ORIGIN      
        1 gagcccagct gcagaggctg gggagcgagc cagaggggcg ggggaggagc atggtacccc
       61 cccaaaaaag tgtgaaagag caaacagtgc tagccagcga gctccgggtt cctgccgcct
      121 gcagtccata acctggcttg gctgaaagtt taagccagca gaacacagga acacagcaca
      181 gggtctgggc ctgtttgtgc tccgaaacca gccaccagcg cctgggatgg aggcagatga
      241 agggcctgtc ctggccagcc acttgaagct acagccttga gagctgcagg cttgtagagt
      301 tggggtcaaa aaaaggaaat aaaccaaaca agccaagaag aaaaagatga gtctggaagc
      361 taagtaccgt gcagcttccc tctacgtggg tgacctccac gaagatgtca cggaggacat
      421 gctcttcagg aagttcagca cagtggggcc ggtgttgtcc atccgaatct gcagggacct
      481 gatttcccaa cgttcactag gctacgccta tgtcaatttt ctccaggtta atgatgccca
      541 gaaggcctta gtcaccatga actttgacgt gatcaaaggt aaatccattc gtctcatgtg
      601 gtctcaacgg gatgcttgcc tgaggagatc gggagtcggg aatgtgttta tcaagaatct
      661 ggacaaatcc attgataaca aaaccttgta tgaacacttc tcaccttttg gaacgatcat
      721 gtcttccaag gtgatgactg atggagaagg ctccaagggc tatggcttcg tgcactacca
      781 ggaccggaga gcggcagaca gggccattga ggagatgaat ggcaagctgc tgagggagag
      841 cactttgttc gtggccagat tcaaaagccg taaggatcgg gaggctgagc tcagagacaa
      901 accaaccgag ttcactaatg tgtatatcaa aaactttgga gatgacgtag atgatgagaa
      961 gctcagggaa gttttcagca aatatggcca aactttgagt gttaaggtga tgaaagatgc
     1021 cactgggaag tccaaaggct ttggatttgt gagttttgat agccacgagg ctgcgaaaaa
     1081 cgcagttgaa gacatgaatg gacaggacat aaacgggcag acgatttttg taggcagagc
     1141 ccagaagaag gtagaacgac aggctgagtt aaaggaaatg tttgagcaga tgaaaaagga
     1201 aagaatccgt gcacgccagg cagctaagct ctacattaag aacctggatg acaccatcga
     1261 tgatgaaaca ctgcgcaagg aattttcagt ctttgggtcc atttgcaggg ttaaagtgat
     1321 gcaggaagca gggcagagca aaggctttgg cttaatctgc ttcttctccc cggaggcagc
     1381 ggcgaaagca atggctgaga tgaacggccg catccttggc tccaaacccc tcaacattgc
     1441 actgggacag aagcactgag cccaacatga tcctacctcg caatctgaga agcagctagg
     1501 agaacgatac tgctctccat ctttccggtg ctataaggaa gggtaatctt gaaaaaaccc
     1561 agtggctgct taatttactg caatcgtgca aggaaatgtc tatacgaaaa catttcgttt
     1621 tatgtgaatg aaaaaaaaat gtacgttaga agtttgattt gttttacaga gcatatcttc
     1681 aaaaaaattt aaaaattctt attttctact acttagaacc gtttagttgg ttacattcat
     1741 attacatttt gaattaagtg aaccaaatgc ttgtctctat tgaatatttt attctttcag
     1801 gttaataact gtgagcttta atttctccta taaaaattgc ccataacaaa tttaattttt
     1861 ttaaactaac aagaatcttt taactttttt tttttttttt ttttttttgc aattcaaaat
     1921 gtagaaattg gtagccagaa tgaagttaaa tcacatattg cacttctgag ttaatccatc
     1981 caagccaaag ttctaatata catgcataaa catattctgg tgtatttggt tttattctat
     2041 tttaagatga tgttagagct ttctggggtt tggtttggtt tggttcttac actttttgta
     2101 tatttgctgt aatctgcttg gtgttttttt tttctgcttc cttatgttat atacatttat
     2161 ctatgctgtt tatggacatt taacttcatc ttaaatcaaa tcacacccat gtggttcaat
     2221 gtgatgcaat tttaggcatt cactagatgc tgatgttgtg aaagtcatag ctatgcaact
     2281 cagaaactcc atctaatgta aatcttgaaa aaaatcttca tgttataaaa atctatcctg
     2341 gttttcagaa tataagtgcc ttatttttct aaatctccac ctccttttat tagactgtgt
     2401 tagccctgta ttagactgtg ttgcgtttgc gtttgctctt ggccttggct catgttccga
     2461 caaatgtgag gttatgttgc ttgatgtgtg ttttagcatg tgttttattt gacactcttc
     2521 ccacatgatg tatctattct gtccataaag tctaactcat ttttacacat ttttacaaag
     2581 acactgtcat attggtgttt catataggct acctcaaatc tatctgaaat aagaggtaag
     2641 agttatttat ttacaactta ctcattatct taaaaatgtt accaaaggtt ggaaaactca
     2701 tgttatttct tctgctttcc attctttctg gttctttcat tcttctccat ttttgattgt
     2761 ttggtcattt cttattacaa tcttttaatt tatgtattac aaatacattt tttccttaac
     2821 aaaattttat gaggaaagtt tcattttgtg tttataaacc atatatacat atatacgtag
     2881 caagtttttc taatctcaat gagaaaagaa aacagtttaa aaaaaagtaa aaaaaaaata
     2941 ttttctacaa atacattctg ctgaaatctg ccacatattg tccctaactt tttatgtgta
     3001 cactaagagc tgatttagga aaggcgacat caacaatttt gtttgaaatc attgttttgt
     3061 atttgatgtt gtcagatgct caaacgtaac ttactcaagg aatgacttac ctattacatt
     3121 aggggctttt gactttggcc aatgggtttt ccatgattcc caaactcttg agaaatatgg
     3181 gtggctttgc aatgcttctc ttctggtctt gacttctgcc aagataactt gaaggtacgc
     3241 attcttccca actcctattg atatgcttcc aattcttttc tggaaaaata aactataatt
     3301 caggacttaa aatcaattta ttttcatgtg ttgccaaaat atcttacaga tatttcataa
     3361 caataacatt ttcattgtaa gtataggcaa atgcacattt ccatattgtc caaggacata
     3421 aatattttgt taggatctgg cagattgagc atagttatga taaataacca ctactctttc
     3481 attgtatggt tttaatagct tctttttttt taattgtcaa atttttacct gtgtccattg
     3541 cattaatatt tcaacacttg taaatttagt gtttcaagaa cctaagctat tttttctctt
     3601 gagtatttat atccacagtt ttctatcaca tcaaaaacta ttttaaacct taccaatgtt
     3661 ctcactttgt ttacagtttg taaagctgtc ccaaagacag attttgaaca caactttttc
     3721 agtatctcat tgagatgaca ttttttattg tgatttgttc taaacacttt aaaatgtctg
     3781 tatatacaca tgtagatgta catgtgtgtg gagtataaac atggagacag gtaggcaatc
     3841 catgttgtct tctattaatg tgtatggctc atattatcaa tatttttata aacaaaactt
     3901 gtttatattt tgtgtaaaga gtacaataaa agttttagct atgtcttgcc tctacaccat
     3961 taagcagcac atgtttgggt tagtactgat ataaactgta tcagagctga tatatacact
     4021 caaattcatt ggcttgcaga atctctacct tgatgagtat tttcatcatc agaagtacca
     4081 gaagttgcca ggactggaga gtacaaaatg aaaacatttt ctgggagatt taatctgcaa
     4141 aagtgtccag ataattgaac aatgaaaaca tctctctttt gtgcacaaat aattggttaa
     4201 atagtttacc atatgcatag atatattgtt atatcagctt aataatgcag tatcctaata
     4261 ccttagtaga aattgtatat tcctagtatt tagcataaaa tttgacagtt cattctcttt
     4321 aatttttaaa tattattcat tctaaatttg tgtgtatgtt tgtgcacatg tgtgaatttg
     4381 tgcatgcatc tgcatgtgtg tgtgtgtgca tgtgtgtttc aacaattaca ttgtatcttc
     4441 ctagttaaca agttttcaca aattaaaaat ttctgtaact aagtgccttg aataagaaag
     4501 acaatctttg cttcattaat aaatcaaagc taatccaaac agaaatgcct tcagccagta
     4561 tctctactcc tcccccacgt atactcccta tctgttgtat agatgactat gttttacaga
     4621 tgatgtaaca catatgtgcc ttgttccagt tttcaaaagt cacatggaaa ttgttaaaat
     4681 ataatttaat gttctctata ttcttcaaat cctaaagaga caatactaaa cataatttac
     4741 cccgtcaatg atggatatgt ctgcgttatt tatgttcatt tcaattatct gtttctaagt
     4801 gtaggtgttt atatttcatg cttttaaatg tttcataatt ctttgacctg aaatctggtt
     4861 ctgtacgtat tcacaataaa aggatcagtt attcagtagc tgttctaacg tgtagccagg
     4921 tttcataaga aacagttgac tgttgtgtta gttcagacag tactcaacgt gtgaaatcat
     4981 ttaaaaaaat gtgaaaaaat gcatgatgcc ttataaatca aagtttgaca ggccaatatt
     5041 tgggatggct ttcttacgaa cagacactaa gaatgatcat accatcacta gatgagaggg
     5101 aaccttaatg tgtgctcgct ctgttccttt tcttcttccc cttcccattc aatagcctcc
     5161 aaccttttac cttggaggct ccacttgagg gagcttgtct actctttatc atcacccaaa
     5221 ggcatgctgt tcacagccaa cctgagataa gattggcatt ctaggtgcct taagatgggg
     5281 aataacttcc tcacatatgt gcttgagtga ctgcctgcat gtgaaaacta tagcaattaa
     5341 aaacataaaa ttcatccaaa atgttgggtg cttaggatta tttttttctt tattttcttt
     5401 tggaatatgg ttcctaatat gattttacaa gcatagcagt gattgtctat gtttactttt
     5461 ttgattgtac tttggctctt attaacagaa aaactaactc aaactgaaaa agtatgttga
     5521 tttccaaaaa atacgcagag ttaagcatcg tcagtcatct tggatcaggt ttctgcatac
     5581 tttagctggt gtctcgctgc tcatcacttt caataccttg gtttatatta tctgccactt
     5641 atgtggtgaa tgtccctatc aacacacaaa cacagcctga atcagaaggc aatggtattc
     5701 tttagaaacc acctctctca attcttgttg cttagttttt gtacagatat tcaaaaagat
     5761 ctgccactgt catagtgaaa agtatcaatt tccaagtttt cttgtggaat gtggttggtt
     5821 ttgatgggga aaaatgagat gtacatggac atattttgga acaaacaata ccctagaatg
     5881 ttttctattg tctgtatcta aattagagtt agaattttct caagttttaa aattatttac
     5941 aaatagtcct ctttagttat ttattataga ttttttttat ttttatcaca atttttaaaa
     6001 atatttttat taggtatttt cctcatttac atttccaatg ctctcccaaa agtcccccat
     6061 aatgttgtct tttcacatag tacacaatac taaagctaat gattccctcc tacttccttt
     6121 tgcatcatca ccatgggaaa taagtcatgc agatttatag cagtagtaag tataaagtga
     6181 agtttgtttt tatttggtaa aaggattcat gttgttattt gacaggatta cctactagaa
     6241 ctaaagagca tactgaaatc tacaactgga aagatccaat ttagcttagt catctgaatt
     6301 accaattcac ataattattg aaagatatga aatggtcaga actgaatcaa cagatatcac
     6361 atttaataag ctattgtttt cttgattttc agttcagtat agccccagtc tgtatcattt
     6421 gtgcactcac taatatctca attaaaaatg aggaggaagg attctttaat aagctctgta
     6481 aaccaacgat tgttatatac tacttaataa atttaaagaa aaacatttcc tactggcaaa
     6541 tattaagaaa gttctagaaa gttgtatatt tacaaaatgg ataaaactct atatacctgt
     6601 actaaactca gagtaacaaa catacttgac ttgcagttgt taaggtcaga ttgtattgca
     6661 cgcttactaa gcaataataa atgcttttgc tctttgtt
//
