LOCUS       NM_177161               2361 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus procollagen-proline, 2-oxoglutarate 4-dioxygenase
            (proline 4-hydroxylase), alpha polypeptide III (P4ha3), mRNA.
ACCESSION   NM_177161 XM_905461
VERSION     NM_177161.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2361)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2361)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2361)
  AUTHORS   Funato,N. and Yanagisawa,H.
  TITLE     Deletion of the T-box transcription factor gene, Tbx1, in mice
            induces differential expression of genes associated with cleft
            palate in humans
  JOURNAL   Arch Oral Biol 95, 149-155 (2018)
   PUBMED   30121012
REFERENCE   4  (bases 1 to 2361)
  AUTHORS   Kukkola,L., Hieta,R., Kivirikko,K.I. and Myllyharju,J.
  TITLE     Identification and characterization of a third human, rat, and
            mouse collagen prolyl 4-hydroxylase isoenzyme
  JOURNAL   J Biol Chem 278 (48), 47685-47693 (2003)
   PUBMED   14500733
  REMARK    GeneRIF: analysis of collagen prolyl 4-hydroxylase isoenzyme 3, its
            expression and catalytic properties
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122269.4.
            
            On Apr 28, 2009 this sequence version replaced NM_177161.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY313449.1, SRR7345562.4042858.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-207               AC122269.4         63948-64154
            208-350             AC122269.4         71004-71146
            351-574             AC122269.4         72175-72398
            575-724             AC122269.4         76326-76475
            725-776             AC122269.4         79065-79116
            777-940             AC122269.4         83928-84091
            941-1117            AC122269.4         84295-84471
            1118-1182           AC122269.4         89215-89279
            1183-1342           AC122269.4         91634-91793
            1343-1405           AC122269.4         93036-93098
            1406-1474           AC122269.4         95470-95538
            1475-1571           AC122269.4         96410-96506
            1572-2361           AC122269.4         97338-98127
FEATURES             Location/Qualifiers
     source          1..2361
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 54.34 cM"
     gene            1..2361
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /note="procollagen-proline, 2-oxoglutarate 4-dioxygenase
                     (proline 4-hydroxylase), alpha polypeptide III"
                     /db_xref="GeneID:320452"
                     /db_xref="MGI:MGI:2444049"
     exon            1..207
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            208..350
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            351..574
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            575..724
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            725..776
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            777..940
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1117
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1182
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1342
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1343..1405
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1406..1474
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1475..1571
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1572..2361
                     /gene="P4ha3"
                     /gene_synonym="D930031A02Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcgaccct gcgatgggcc caggggcgcg gctggctctg ctggcgctgc tggcgctcgg
       61 gggagacccc gcggcggcca cggggcggga ggacacgttc tccgcgctga ccagcgtggc
      121 gcgcgccctg gcgcccgagc gcaggctgct ggggacactg aggcgctacc tgcgcggcga
      181 ggaggcgcgg ctgcgcgact tgaccagatt ctatgacaag gtactttctt tgcacgagga
      241 cttgaagatc cctgtagtga atcctctact tgccttcact ctcatcaaac gtctgcagtc
      301 cgactggagg aatgtggtac atagtctgga ggccactgag aacatccgag ctctgaagga
      361 tggctatgag aaggtagagc aagaccttcc tgcctttgag gacctcgagg gagcagcaag
      421 ggccctgatg cggctgcagg atgtgtacat gctcaacgtg aagggcttgg ctcgaggcgt
      481 cttccagagg gtcacgggct cctccatcac cgacctgtac agtcccaggc agctcttctc
      541 tctcacagcg gatgactgct tccaagttgg caaggtggcc tatgacacag gggattacta
      601 ccatgccatc ccatggctgg aggaagctgt cagtctcttc cggagagccc acggcgagtg
      661 gaagacagag gacgaggcca gtctggaaga cgccctggat tacttggcct ttgcctgttt
      721 ccaggtagga aatgtttcat gtgccctcag cctctctcga gagttccttg tctacagccc
      781 agacaataag aggatggcca ggaatgtgtt gaaatatgaa aggctcttgg ctgagaatgg
      841 tcaccagatg gcggctgaga ctgcaattca gaggcccaac gtaccccacc tgcagaccag
      901 ggacacctac gaggggctat gccagaccct gggctcccag ccaacacact accaaatccc
      961 cagcctctac tgctcctatg agaccaattc cagcccctac ctactgctcc agcctgcccg
     1021 aaaggaggtt gtccacctac ggccgctcat agctctctac catgactttg tcagtgacga
     1081 ggaagctcag aaaatccgag agcttgcaga accgtggctc cagagatcag tggtggcttc
     1141 gggggaaaag cagttgcaag tggagtaccg catcagcaaa agtgcctggc taaaggacac
     1201 ggttgatcca atgctggtga cccttgacca ccgcattgcg gccctcacag gccttgacat
     1261 ccagcctccc tacgcagagt atctccaggt ggtgaactat ggaatcggag ggcactatga
     1321 gcctcacttt gaccatgcta cgtcgcccag cagccccctg tacagaatga agtctgggaa
     1381 ccgagtggca acgtttatga tctatctgag ctccgtagaa gctggaggag ccacggcttt
     1441 tatctatggc aacttcagtg tgcctgtggt taagaatgct gcactgtttt ggtggaacct
     1501 gcacaggagc ggagaggggg atggtgacac acttcatgct ggctgtcctg tgctggtggg
     1561 agacaagtgg gtggccaaca agtggatcca cgagtatgga caggaattcc gaagaccctg
     1621 cagcaccaac cctgaagact gaaacactgg cagatggcag cttgtcagag aagccaggag
     1681 ccaaagccat gggcagaggg gagccgaccc tcctgaagga aggcctccag caaggctgct
     1741 gcctgtgagt caaggatagg actttactag gaagccccct atcccccaaa tttgcatctg
     1801 tttctactcc agctgtgaga cttaagagtc gaatggacaa gacgaagagg cctaagaggg
     1861 cgcagatgtc cttaggaata aaaggattga gctcagtgta gaaactcagg gtttagaatg
     1921 tgcctgggtt tagttcacta acactgaaca cacaccacat acacacacac acacacacac
     1981 acacacacac acacacacac acacatatcc atacacccat ccacatatac ccatatacac
     2041 acacatgcat acacacacac acacacacac ccatacaccc acatataccc atacacacag
     2101 acatgcgtac acacatatac atacacatat atacaagcac acacacacac atccatacac
     2161 ccatcctcat atacccacac acacactgca aacaataatg gggctgattt ctgctgctgc
     2221 cccaggagga gtgtctgacc cagaggcctc catccccatc cccagtgggg atatcatgtg
     2281 acgactgact tttaaagtgg aaaacaattt tgttttcctt tttgtgatgg tttttattgt
     2341 cattaaaatg ttttacaaac a
//
