LOCUS       NM_001099295             419 bp    mRNA    linear   ROD 06-OCT-2024
DEFINITION  Mus musculus Pik3r3 upstream reading frame (P3r3urf), mRNA.
ACCESSION   NM_001099295 XM_001472749 XM_001475594
VERSION     NM_001099295.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK006685.1 and BU946248.1.
            
            On Dec 29, 2007 this sequence version replaced NM_001099295.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU946248.1, CN838828.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-382               AK006685.1         1-382
            383-392             BU946248.1         363-372
            393-419             BU946248.1         374-400
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 53.1 cM"
     gene            1..419
                     /gene="P3r3urf"
                     /gene_synonym="1700042G07Rik"
                     /note="Pik3r3 upstream reading frame"
                     /db_xref="GeneID:67323"
                     /db_xref="MGI:MGI:1914573"
     exon            1..258
                     /gene="P3r3urf"
                     /gene_synonym="1700042G07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..302
                     /gene="P3r3urf"
                     /gene_synonym="1700042G07Rik"
                     /codon_start=1
                     /product="PIK3R3 upstream open reading frame protein"
                     /protein_id="NP_001092765.1"
                     /db_xref="CCDS:CCDS51276.1"
                     /db_xref="GeneID:67323"
                     /db_xref="MGI:MGI:1914573"
                     /translation="MGPSQLVRAPRPPGLTSPYRRPGMGGPRRRCPSMFKCSRRTYRQ
                     KPRGPTATNPASEATNISDTDTTTSVLILSPRVLRFLCQPGGFLVL"
     exon            259..392
                     /gene="P3r3urf"
                     /gene_synonym="1700042G07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      367..372
                     /regulatory_class="polyA_signal_sequence"
                     /gene="P3r3urf"
                     /gene_synonym="1700042G07Rik"
                     /note="hexamer: AATACA"
     polyA_site      386
                     /gene="P3r3urf"
                     /gene_synonym="1700042G07Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcagaacccc tcaggagctc cctgtagcca tggggccttc tcagcttgtt cgagcccctc
       61 ggcctccggg cttgacttct ccctaccgaa ggccagggat gggtgggccc aggcgccggt
      121 gtcccagtat gttcaagtgt agccgcagga cataccggca gaaaccccga ggcccaactg
      181 ccaccaatcc tgcctctgag gccacaaaca tcagtgacac ggacactacc accagtgtat
      241 tgattctgtc acctcgagtt ctcagatttc tctgtcaacc tgggggcttt ctggtcctct
      301 agaaatgccc agaagctcgg cctgcacttg acctgctgct ccagaggctg ttgatggtag
      361 acagcaaata caaccattct gcttaagctg tcaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
