LOCUS       NM_026936               2538 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus oxidase assembly 1-like (Oxa1l), mRNA; nuclear gene
            for mitochondrial product.
ACCESSION   NM_026936 XM_127742
VERSION     NM_026936.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2538)
  AUTHORS   Georgas,K., Rumballe,B., Valerius,M.T., Chiu,H.S.,
            Thiagarajan,R.D., Lesieur,E., Aronow,B.J., Brunskill,E.W.,
            Combes,A.N., Tang,D., Taylor,D., Grimmond,S.M., Potter,S.S.,
            McMahon,A.P. and Little,M.H.
  TITLE     Analysis of early nephron patterning reveals a role for distal RV
            proliferation in fusion to the ureteric tip via a cap
            mesenchyme-derived connecting segment
  JOURNAL   Dev Biol 332 (2), 273-286 (2009)
   PUBMED   19501082
REFERENCE   3  (bases 1 to 2538)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   4  (bases 1 to 2538)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC206013.3.
            
            On Jan 23, 2023 this sequence version replaced NM_026936.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK052432.1, AK154532.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-77                AC206013.3         90768-90844
            78-224              AC206013.3         91249-91395
            225-438             AC206013.3         93209-93422
            439-582             AC206013.3         96636-96779
            583-668             AC206013.3         96952-97037
            669-833             AC206013.3         97193-97357
            834-938             AC206013.3         97515-97619
            939-1101            AC206013.3         97720-97882
            1102-1182           AC206013.3         98080-98160
            1183-2538           AC206013.3         98245-99600
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 27.76 cM"
     gene            1..2538
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /note="oxidase assembly 1-like"
                     /db_xref="GeneID:69089"
                     /db_xref="MGI:MGI:1916339"
     exon            1..77
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..1316
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /note="OXA1-like protein; oxidase assembly 1-like protein"
                     /codon_start=1
                     /product="mitochondrial inner membrane protein OXA1L"
                     /protein_id="NP_081212.1"
                     /db_xref="CCDS:CCDS27086.1"
                     /db_xref="GeneID:69089"
                     /db_xref="MGI:MGI:1916339"
                     /translation="MARNLVCGRWQLLRLLRPQRSYHSVAVSLRPLAAELLAARRGNG
                     RPPCALLAVFTPRCISTSATLFAEAQVQAPPVIPATSIPAAVPEVASGGAADVVQCAT
                     EPSFTELGLGSYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPLIVKGQRE
                     AAKIHNHMPEMQKFSARIREAKLAGDQAEFYKATIEMTRYQKKHDIKLLRPLILPLTQ
                     APVFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYVLPLVVTATMWCVLELGA
                     ETGVQSNDLQFMRNIIRVMPLVVLPVTIHFPSAVFMYWLSSNVFSLCQVACLRIPAVR
                     TVLKIPQRVVHDPDKLPPREGFLKSFKKGWKNAEIAQQLREREQRMQKHLDLAARGPL
                     RQTFTHNPLLQHDPSHPPKAPNSNNSSIKANAKKPWQDTLG"
     exon            78..224
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            225..438
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            439..582
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            583..668
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            669..833
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            834..938
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            939..1101
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1182
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..2538
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1500..1505
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      1505
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /note="major polyA site"
     regulatory      2289..2294
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2318
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
     regulatory      2513..2518
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2538
                     /gene="Oxa1l"
                     /gene_synonym="1810020M02Rik"
ORIGIN      
        1 ctcttcccgg caagatggcg aggaatttag tgtgcggtcg ctggcagctt ctgcgactcc
       61 tacgacccca gcgttcgtac catagcgtcg cagtgtccct gagaccgctg gccgccgagc
      121 tcctcgcagc ccgccggggt aacgggcggc caccctgtgc tcttctcgcc gtcttcactc
      181 ctcgctgcat cagtacatct gccaccctct ttgcagaagc ccaggtccag gcaccccctg
      241 ttattcctgc tacctctatc cctgctgcag taccagaggt agcttctgga ggagctgcag
      301 atgtagtcca gtgtgctacc gaaccgagct tcacagaact ggggcttggt tcttacaccc
      361 cggtgggtct catccagaac ctcttggaat atatacatgt cgacctgggc ctgccgtggt
      421 ggggagccat tgccacgtgt actgtccttg cccgatgcct cgtttttcct ctcattgtga
      481 agggccagcg agaagcagcc aagatccaca accacatgcc agagatgcag aagttttccg
      541 ctcgaatcag agaggccaag ttggccggag accaggctga gttttacaag gccaccatag
      601 agatgacacg ctatcagaaa aagcatgata ttaaactctt gagaccgctc atcctacctc
      661 tcactcaggc ccccgtcttc atctccttct ttattgcctt gagagagatg gccaacctgc
      721 ctgtgcccag cctccagaca ggtgggctct ggtggttcca agatctcacc gtgtctgatc
      781 ccatctacgt cttgccactg gtagtcactg ccacaatgtg gtgtgtcctt gagctaggtg
      841 ctgagacagg tgttcagagc aatgaccttc agttcatgag gaacattatc agggtgatgc
      901 ccctggtggt cttgcctgtg accatccact tcccctcggc agtgttcatg tactggctgt
      961 cctccaacgt gttctccctg tgccaagtag cctgcctccg gattccagct gtgcgcacag
     1021 tgctgaagat cccccagcga gtcgtacatg accctgacaa attgcctcct agggaaggct
     1081 tcttgaagag cttcaaaaaa ggctggaaga acgctgaaat tgcacagcag ctccgagagc
     1141 gggagcagcg aatgcagaaa cacttggacc tggctgccag gggtccctta cgacagactt
     1201 ttacgcacaa ccctctgctg cagcatgatc caagtcaccc cccgaaagct cccaacagca
     1261 acaacagcag catcaaagca aacgcaaaga agccttggca agacacactc ggttgacgtg
     1321 ttctgtgctc actctgacaa gacccctgcc tctgcagact cctccacaca gacttgcccc
     1381 agccctgggg actacagcat ttggaggtgt tcattttaaa agttgtttcc actacagact
     1441 cttatttgtg tgtattaaaa gagccctgga gagccaagca gccttccatc cacagaacta
     1501 gtaaacccct gtcttgtctg ggcttcttga tgtttgttaa gtatggaagg gggttgtgct
     1561 tctgaacacg acagggtggg agatgatttc ccttgccagc cctagctcct gggaaggagc
     1621 ttcatgtttt ctcctggtct tcacagctca gacctctacc tcacacactg tgcacctcca
     1681 tctgagtttg catcctagag gtgtcatggg caagactgtg acagccgccc ttgtggggct
     1741 ggagattgat cctacagccc tgacccccca ccccccaaca cgattacttt tgcaatttcc
     1801 ttacgaagca gatatactga aatccttagt aatggtttag aagaatgaag ggagtctggg
     1861 gaaaaatgga tcagcagata agagttcaaa tccccggcac tcaggcagaa agctgagcat
     1921 ggccctgctc ttacgcctgt gaccccagtg ctgtggggtg tggagacagg ggggccgctt
     1981 ggtttgctgg ccatcagcct agctccaggt tcagtgtgag atccggtctc tgggtataaa
     2041 ggtggacgtg acagagcacg acgcctgaca ccctcctctg gcctctgcgc atgcaccagc
     2101 catactttaa gaagaagctg aagtgtttat gcactagctt ttcccattca tgacatttta
     2161 gtacaacagt tgtgctgtat ttgtagaaat cggttctatt gccgttggca gctggcttca
     2221 gagggagaac tgaatctttt agtttccatg tctgtttgaa ctgcataaat accccagtca
     2281 ctaagtagaa taaagccact cagaccttag gaacataact tttttattgt tttgcatctg
     2341 tgacagtttt gtgttcctct gaaggagaca agtttggagc attgttggcc cttgtaaagg
     2401 aaagaggagt gggtggccac acccaggtgc tgccaggact gccccaaaat ggcctacttc
     2461 ctgccacagt ctgcatcatc catttatgaa gtctgaaaca tgtagcaaaa caaataaatt
     2521 actcttcatc cctcaaaa
//
