LOCUS       NM_001368727            3381 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus oxysterol binding protein-like 9 (Osbpl9), transcript
            variant g, mRNA.
ACCESSION   NM_001368727 XM_006502619
VERSION     NM_001368727.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3381)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3381)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3381)
  AUTHORS   Alvarez-Dominguez,J.R., Zhang,X. and Hu,W.
  TITLE     Widespread and dynamic translational control of red blood cell
            development
  JOURNAL   Blood 129 (5), 619-629 (2017)
   PUBMED   27899360
REFERENCE   4  (bases 1 to 3381)
  AUTHORS   Gauci,S., Helbig,A.O., Slijper,M., Krijgsveld,J., Heck,A.J. and
            Mohammed,S.
  TITLE     Lys-N and trypsin cover complementary parts of the phosphoproteome
            in a refined SCX-based approach
  JOURNAL   Anal Chem 81 (11), 4493-4501 (2009)
   PUBMED   19413330
  REMARK    GeneRIF: Includes data showing N-alpha terminal acetylation of the
            homologous human protein (OSBL9_HUMAN), where the N-terminal
            sequence is nASIMEGPLSK following cleavage of the initiating Met-1
            derived from a downstream start codon in the transcript.
REFERENCE   5  (bases 1 to 3381)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   6  (bases 1 to 3381)
  AUTHORS   Sharov,A.A., Piao,Y., Matoba,R., Dudekula,D.B., Qian,Y.,
            VanBuren,V., Falco,G., Martin,P.R., Stagg,C.A., Bassey,U.C.,
            Wang,Y., Carter,M.G., Hamatani,T., Aiba,K., Akutsu,H., Sharova,L.,
            Tanaka,T.S., Kimber,W.L., Yoshikawa,T., Jaradat,S.A., Pantano,S.,
            Nagaraja,R., Boheler,K.R., Taub,D., Hodes,R.J., Longo,D.L.,
            Schlessinger,D., Keller,J., Klotz,E., Kelsoe,G., Umezawa,A.,
            Vescovi,A.L., Rossant,J., Kunath,T., Hogan,B.L., Curci,A.,
            D'Urso,M., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
REFERENCE   7  (bases 1 to 3381)
  AUTHORS   Anniss,A.M., Apostolopoulos,J., Dworkin,S., Purton,L.E. and
            Sparrow,R.L.
  TITLE     An oxysterol-binding protein family identified in the mouse
  JOURNAL   DNA Cell Biol 21 (8), 571-580 (2002)
   PUBMED   12215260
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL627103.13 and AL627406.15.
            
            On Feb 22, 2019 this sequence version replaced XM_006502619.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KY499694.1, SRR13861889.153702.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: lack of evidence for use of
                                                upstream AUG
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               AL627103.13        54720-54887         c
            169-219             AL627103.13        24889-24939         c
            220-298             AL627103.13        9270-9348           c
            299-375             AL627406.15        139573-139649       c
            376-471             AL627406.15        108326-108421       c
            472-519             AL627406.15        106945-106992       c
            520-549             AL627406.15        105750-105779       c
            550-600             AL627406.15        104332-104382       c
            601-639             AL627406.15        97490-97528         c
            640-730             AL627406.15        93224-93314         c
            731-835             AL627406.15        92156-92260         c
            836-995             AL627406.15        88918-89077         c
            996-1108            AL627406.15        78866-78978         c
            1109-1227           AL627406.15        78643-78761         c
            1228-1313           AL627406.15        77772-77857         c
            1314-1485           AL627406.15        74192-74363         c
            1486-1570           AL627406.15        72744-72828         c
            1571-1681           AL627406.15        71957-72067         c
            1682-1745           AL627406.15        71694-71757         c
            1746-1886           AL627406.15        71453-71593         c
            1887-1965           AL627406.15        70392-70470         c
            1966-2057           AL627406.15        69195-69286         c
            2058-2193           AL627406.15        68294-68429         c
            2194-3381           AL627406.15        66974-68161         c
FEATURES             Location/Qualifiers
     source          1..3381
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 50.77 cM"
     gene            1..3381
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /note="oxysterol binding protein-like 9"
                     /db_xref="GeneID:100273"
                     /db_xref="MGI:MGI:1923784"
     exon            1..168
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..2268
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /note="isoform f is encoded by transcript variant g;
                     oxysterol-binding protein-related protein 9; OSBP-related
                     protein 9"
                     /codon_start=1
                     /product="oxysterol-binding protein-related protein 9
                     isoform f"
                     /protein_id="NP_001355656.1"
                     /db_xref="CCDS:CCDS89802.1"
                     /db_xref="GeneID:100273"
                     /db_xref="MGI:MGI:1923784"
                     /translation="MASIVEGPLSKWTNVMKGWQYRWFVLDYNAGLLSYYTSKDKMMR
                     GSRRGCVRLRGAVIGIDDEDDSTFTITVDQKTFHFQARDADEREKWIHALEETILRHT
                     LQLQGLDSGFIPSVQDFDKKLTEADAYLQILIEQLKLFDDKLQNCKDDEQRKKVETLK
                     DTTNSMVESIKHCIVLLQIAKDQSNAEQHADGIISTINPVDAIYQPSPLEPVISTMPS
                     QTALPPEPAQLCKSEQRPSSLPVGPVLATLGHHQTPTPNSTGSGNSPPSSSLTPPSHV
                     NLSPNTVPEFSYSSSEDEFYDADEFHQSGSSPKRLIDSSGSASVLTHSSSGNSLKRPD
                     TTESLNSSMSNGTSDADLFDSHDDRDDDGEAGSVEEHKSVIMHLLSQVRLGMDLTKVV
                     LPTFILERRSLLEMYADFFAHPDLFVSISDQKDPRDRMVQVVKWYLSAFHAGRRGSVA
                     KKPYNPILGEIFQCHWTLPNDTEENAELVSEGPVPWVSKNSVTFVAEQVSHHPPISAF
                     YAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSCLEYDEHYILTFPNGYGRSIL
                     TVPWVELGGECNINCSKTGYSANIVFHTKPFYGGKKHRITAEIFSPNDKKSFCSIEGE
                     WNGIMYAKYATGENTVFVDTKKLPIIKKKVRKLEDQNEYESRSLWKDVTFNLKIRDID
                     AATEAKHRLEERQRAEARERKEKEIQWETRLFHEDGECWVYDEPLLKRLGAVKH"
     exon            169..219
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            220..298
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            299..375
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            376..471
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            472..519
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            520..549
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            550..600
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            601..639
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            640..730
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            731..835
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            836..995
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            996..1108
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1227
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1313
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            1314..1485
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            1486..1570
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            1571..1681
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            1682..1745
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            1746..1886
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            1887..1965
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            1966..2057
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            2058..2193
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            2194..3381
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2414..2419
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /note="hexamer: ATTAAA"
     polyA_site      2445
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /note="major polyA site"
     regulatory      2852..2857
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /note="hexamer: AATAAT"
     polyA_site      2876
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /note="major polyA site"
     regulatory      3087..3092
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
                     /note="hexamer: ATTAAA"
     polyA_site      3109
                     /gene="Osbpl9"
                     /gene_synonym="2600011I06Rik; Orp-9"
ORIGIN      
        1 cgaatgccat ataggcgact gacgtcaggc cgtttgttgt cattggcggc tcccaagatg
       61 gcgtccatcg tggaagggcc gctgagcaaa tggactaacg tgatgaaggg atggcagtat
      121 cgttggttcg tgctggacta caatgcaggg ctgctctcct actacacgtc caaggacaaa
      181 atgatgagag gctctcgaag aggatgcgtt agactcagag gagctgtgat tggtatagac
      241 gacgaggacg acagcacctt cacaatcact gtcgatcaga aaaccttcca cttccaggct
      301 cgagatgcag acgagcgaga gaagtggatc catgccttag aagaaactat tcttcgccat
      361 actcttcagc ttcaaggttt ggattcagga ttcatcccca gtgtccaaga ctttgataag
      421 aaacttaccg aggctgacgc gtacctgcag atcttgatag aacaattaaa gctttttgat
      481 gacaagcttc aaaattgtaa agatgatgaa cagagaaaga aagttgaaac tctcaaagac
      541 acaacaaata gcatggtaga atcaattaaa cactgcattg tgttgctaca gattgctaaa
      601 gaccagagta atgcggagca gcacgcagat ggaattataa gtactattaa tcctgtagat
      661 gcaatatacc agcctagtcc cttggaacct gtgatcagca caatgccttc ccagactgcc
      721 ttacctccag aacccgctca gttgtgtaag tcagagcagc gtccatcttc cttacctgtt
      781 ggacctgtgt tagctacctt gggacatcat cagactccaa caccaaatag tacaggcagt
      841 gggaactcac cacctagcag cagtctgact cctcccagcc atgtcaactt gtctccaaat
      901 acagtcccag agttctctta ctctagcagt gaagatgagt tctatgatgc tgatgaattc
      961 catcaaagtg gctcgtcccc aaagcgctta atagattctt ctggatctgc ctcagtcttg
     1021 acacacagca gctccggaaa tagcttaaaa cgcccagata ccacagagtc tctgaattcc
     1081 tccatgtcca atggcacaag cgatgctgat ctttttgact cacatgacga cagagatgat
     1141 gatggggagg ctgggtcagt ggaggagcac aagagcgtta tcatgcacct cttatcacaa
     1201 gtcaggctgg ggatggacct cacaaaggta gttcttccaa cgtttattct cgagagaaga
     1261 tctctgttag aaatgtatgc agactttttc gcacatccag acctgttcgt gagcattagt
     1321 gatcagaagg atcccaggga tcgaatggtt caggttgtga aatggtacct ctcggccttc
     1381 catgcaggaa ggagaggatc ggtggccaaa aagccgtaca atcctatttt gggtgagatc
     1441 tttcagtgtc actggacgtt gccgaatgat actgaagaga acgcagagct cgtttcagaa
     1501 gggccggttc cctgggtttc taagaacagt gtaacatttg tggctgagca agtttcccac
     1561 catccgccca tttcagcctt ttatgctgag tgttttaaca agaagataca attcaatgct
     1621 catatctgga ctaaatcaaa attccttggg atgtcaattg gggtacacaa cataggtcag
     1681 ggctgtgtct cgtgtctgga gtacgatgag cactacatcc tcacgttccc caatggctat
     1741 ggaaggtcta tcctgacagt gccctgggtg gaattgggag gagaatgcaa tatcaactgc
     1801 tccaaaacgg gttacagcgc aaacatcgtc ttccacacta agcctttcta tgggggcaag
     1861 aagcacagaa ttactgcaga gattttttct ccgaatgaca agaaatcctt ctgctcaatt
     1921 gaaggggaat ggaatggtat catgtatgca aaatacgcaa caggggaaaa cactgtcttt
     1981 gtagacacca agaaattgcc tataatcaag aaaaaggtga ggaagttgga agatcagaat
     2041 gagtatgagt cccgcagcct ttggaaggat gtcactttca atttaaaaat cagagacatt
     2101 gatgcagcaa cggaagcaaa gcacagactt gaagaaagac aaagagcaga agcccgagaa
     2161 aggaaggaga aggaaattca gtgggagacg aggctctttc acgaggatgg cgaatgctgg
     2221 gtttacgatg agcctttact gaagcgtctt ggtgctgtga agcattaggc cgacaaccga
     2281 gtccacacct ggtgaccagg gcagtaggcg taattaagca acaatcgatc ttccttcagg
     2341 agagcttgtc acttccttct taacgcagtg gttcctatct cagggatact ggacttgacg
     2401 acacagatga acaattaaag tggaaaccgc ttcccttttc tcctctgtgg cagttacaat
     2461 tttgacttca ggcctgagaa aaacttcagg tttcgaaaca tgacatctct tccttttcca
     2521 gatcccatgc tttgaaaaat atttatagac agttccaggt ctcagcttcc tgtcctctag
     2581 ttctgctgtt cgggcataaa atctttatct ccagttcata taatcttgag ttttagatat
     2641 acacacatgc gtaacagctg acagtttttc acaagtacac ccacctgtaa atactgtatc
     2701 ctcagtttag aaaattagtg caatgtatga aaatcaagtg ttaggaaatt tcatggtttc
     2761 acctataacc tttattttag aattgaacta tgattagatt gtatctaaac ctgaagtata
     2821 attatatgca gtgcttctta aggcttcata aaataatttt ccaacctttt taaaaatatg
     2881 tttctttcat tgttttatac ctaaccttgc agaccaacct ggcagccttt tctgaggctc
     2941 cccgactcaa gccctccggc tagtcctgga tgccttactg cctcgcaggg ctggaggact
     3001 gcacttcccc caccccaccc ccaaaaaagc cacggcagat ggcttgatgt gaagggatat
     3061 acagaactat gtttacttta aagtacatta aaaaaacaaa accagggcag tttggtgcta
     3121 taacaaatta attacagata ggcacacaag agctgggttc tcctcagagg acacaggcca
     3181 ggggccccca cattgctgac gtaagtgttt gggtcacact tgcctactat ctcattgcca
     3241 tcctgagcta atcttgtaga ggaaaggtaa aaagtaaatc aaatcctagg ttgccatcga
     3301 aaaaatccaa tggaagccct aaggcagcag tgtaactcca taaaatgcac acacgtcttt
     3361 aaatacacgt tgcttcaggc c
//
