LOCUS       NM_001278787            1025 bp    mRNA    linear   ROD 26-OCT-2024
DEFINITION  Mus musculus olfactory receptor family 4 subfamily K member 42
            (Or4k42), transcript variant 2, mRNA.
ACCESSION   NM_001278787
VERSION     NM_001278787.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Olender,T., Jones,T.E.M., Bruford,E. and Lancet,D.
  TITLE     A unified nomenclature for vertebrate olfactory receptors
  JOURNAL   BMC Evol Biol 20 (1), 42 (2020)
   PUBMED   32295537
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Favor,J., Bradley,A., Conte,N., Janik,D., Pretsch,W., Reitmeir,P.,
            Rosemann,M., Schmahl,W., Wienberg,J. and Zaus,I.
  TITLE     Analysis of Pax6 contiguous gene deletions in the mouse, Mus
            musculus, identifies regions distinct from Pax6 responsible for
            extreme small-eye and belly-spotting phenotypes
  JOURNAL   Genetics 182 (4), 1077-1088 (2009)
   PUBMED   19474196
REFERENCE   3  (bases 1 to 1025)
  AUTHORS   Young,J.M., Shykind,B.M., Lane,R.P., Tonnes-Priddy,L., Ross,J.A.,
            Walker,M., Williams,E.M. and Trask,B.J.
  TITLE     Odorant receptor expressed sequence tags demonstrate olfactory
            expression of over 400 genes, extensive alternate splicing and
            unequal expression levels
  JOURNAL   Genome Biol 4 (11), R71 (2003)
   PUBMED   14611657
REFERENCE   4  (bases 1 to 1025)
  AUTHORS   Young,J.M., Friedman,C., Williams,E.M., Ross,J.A., Tonnes-Priddy,L.
            and Trask,B.J.
  TITLE     Different evolutionary processes shaped the mouse and human
            olfactory receptor gene families
  JOURNAL   Hum Mol Genet 11 (5), 535-546 (2002)
   PUBMED   11875048
  REMARK    Erratum:[Hum Mol Genet. 2002 Jul 1;11(14):1683.]
REFERENCE   5  (bases 1 to 1025)
  AUTHORS   Zhang,X. and Firestein,S.
  TITLE     The olfactory receptor gene superfamily of the mouse
  JOURNAL   Nat Neurosci 5 (2), 124-133 (2002)
   PUBMED   11802173
REFERENCE   6  (bases 1 to 1025)
  AUTHORS   Sullivan,S.L., Adamson,M.C., Ressler,K.J., Kozak,C.A. and Buck,L.B.
  TITLE     The chromosomal distribution of mouse odorant receptor genes
  JOURNAL   Proc Natl Acad Sci U S A 93 (2), 884-888 (1996)
   PUBMED   8570653
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL731699.11.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Transcript Variant: This variant (2) lacks an alternate exon in the
            5' UTR, compared to variant 1. Variants 1, 2, and 3, encode the
            same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB173233.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                AL731699.11        131103-131161       c
            60-1025             AL731699.11        126564-127529       c
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 56.75 cM"
     gene            1..1025
                     /gene="Or4k42"
                     /gene_synonym="MOR248-9; Olfr1290"
                     /note="olfactory receptor family 4 subfamily K member 42"
                     /db_xref="GeneID:257662"
                     /db_xref="MGI:MGI:3031124"
     exon            1..59
                     /gene="Or4k42"
                     /gene_synonym="MOR248-9; Olfr1290"
                     /inference="alignment:Splign:2.1.0"
     exon            60..1025
                     /gene="Or4k42"
                     /gene_synonym="MOR248-9; Olfr1290"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..1025
                     /gene="Or4k42"
                     /gene_synonym="MOR248-9; Olfr1290"
                     /codon_start=1
                     /product="olfactory receptor 1290"
                     /protein_id="NP_001265716.1"
                     /db_xref="CCDS:CCDS50659.1"
                     /db_xref="GeneID:257662"
                     /db_xref="MGI:MGI:3031124"
                     /translation="MDEGNHTMVSEFILWGLSSSQRIEVLLFMVFSMLYLLIVSGNIV
                     ILVLITTDPHLHSPMYFLLANLSFIDMWLSSVTTPKMITDFLRENKTISFAGCMSQVF
                     FAHCIAAGEMVLLVIMAYDRYVAICKPLHYFTIMNMKRCTGLVFTSWTTGFVHALSHL
                     VVIVELPFCGPKEIDSFFCDMPLVIKLACIDSRDLDVLMNADCGLVAVTCFILLLISY
                     TYILITVCQSSKAGASKAMNTCTAHITVVLIFFVPCIFIYVWPLNITWLDKFLAVFYS
                     VFTPLLNPAIYTLRNKEMKNAMKRFISNYLSHKGNL"
ORIGIN      
        1 ttcataagca catattagat gggaagaaat tctgacccaa gagaaaatta tgatttttcg
       61 ttacttctga agacacactg agtaaaatgg atgaaggcaa tcacactatg gtgtcagaat
      121 ttatactctg gggactttcc agctcacaga ggattgaagt cttactcttc atggtgtttt
      181 caatgcttta tcttctcatt gtttctggaa atattgtcat tctggtttta atcaccactg
      241 acccccatct gcattctccc atgtacttct tgttggccaa cctgtccttt attgatatgt
      301 ggctttcctc agtcactact cctaagatga ttacagactt tctcagagaa aacaagacca
      361 tttcctttgc aggatgcatg tcccaggtct tctttgccca ttgtattgct gcaggagaga
      421 tggtgctgtt ggtgataatg gcttatgatc gctatgtggc catctgcaaa ccactccact
      481 acttcaccat catgaatatg aagagatgca ctgggttggt gttcacttcc tggacaactg
      541 gatttgtaca tgctcttagt catttggtag tgattgtgga attgcctttt tgtggaccta
      601 aggaaataga tagctttttc tgtgacatgc cattggtaat caagctagct tgcatagatt
      661 cccgtgactt ggatgttcta atgaatgctg attgtggact tgtggctgta acttgcttta
      721 ttctgttgct tatttcctac acatatattc ttatcaccgt atgtcagagc tctaaagctg
      781 gtgcatctaa ggcaatgaac acatgcactg cccacattac ggtggtgctg atcttttttg
      841 tgccctgcat cttcatctat gtatggcctc tcaatatcac ttggttggat aaatttcttg
      901 ctgtatttta ctctgttttt acacctctcc taaatccagc catttatact ctgagaaata
      961 aagagatgaa aaatgccatg aaaagattta taagtaacta ccttagtcac aaaggaaatt
     1021 tataa
//
