LOCUS       NM_146373                957 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Mus musculus olfactory receptor family 4 subfamily A member 80
            (Or4a80), mRNA.
ACCESSION   NM_146373
VERSION     NM_146373.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 957)
  AUTHORS   Olender,T., Jones,T.E.M., Bruford,E. and Lancet,D.
  TITLE     A unified nomenclature for vertebrate olfactory receptors
  JOURNAL   BMC Evol Biol 20 (1), 42 (2020)
   PUBMED   32295537
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 957)
  AUTHORS   Young,J.M., Shykind,B.M., Lane,R.P., Tonnes-Priddy,L., Ross,J.A.,
            Walker,M., Williams,E.M. and Trask,B.J.
  TITLE     Odorant receptor expressed sequence tags demonstrate olfactory
            expression of over 400 genes, extensive alternate splicing and
            unequal expression levels
  JOURNAL   Genome Biol 4 (11), R71 (2003)
   PUBMED   14611657
REFERENCE   3  (bases 1 to 957)
  AUTHORS   Young,J.M., Friedman,C., Williams,E.M., Ross,J.A., Tonnes-Priddy,L.
            and Trask,B.J.
  TITLE     Different evolutionary processes shaped the mouse and human
            olfactory receptor gene families
  JOURNAL   Hum Mol Genet 11 (5), 535-546 (2002)
   PUBMED   11875048
  REMARK    Erratum:[Hum Mol Genet. 2002 Jul 1;11(14):1683.]
REFERENCE   4  (bases 1 to 957)
  AUTHORS   Zhang,X. and Firestein,S.
  TITLE     The olfactory receptor gene superfamily of the mouse
  JOURNAL   Nat Neurosci 5 (2), 124-133 (2002)
   PUBMED   11802173
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL929065.4.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-957               AL929065.4         72711-73667         c
FEATURES             Location/Qualifiers
     source          1..957
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 50.12 cM"
     gene            1..957
                     /gene="Or4a80"
                     /gene_synonym="MOR231-18; MOR231-19P; Olfr1253;
                     Olfr1253-ps1; Olfr1559-ps1"
                     /note="olfactory receptor family 4 subfamily A member 80"
                     /db_xref="GeneID:258370"
                     /db_xref="MGI:MGI:3031393"
     CDS             1..957
                     /gene="Or4a80"
                     /gene_synonym="MOR231-18; MOR231-19P; Olfr1253;
                     Olfr1253-ps1; Olfr1559-ps1"
                     /note="olfactory receptor MOR231-18; olfactory receptor
                     MOR231-19P; olfactory receptor 1559, pseudogene 1;
                     olfactory receptor 1253, pseudogene 1;
                     GA_x6K02T2Q125-51193814-51192857"
                     /codon_start=1
                     /product="olfactory receptor 1253"
                     /protein_id="NP_666485.1"
                     /db_xref="CCDS:CCDS50628.1"
                     /db_xref="GeneID:258370"
                     /db_xref="MGI:MGI:3031393"
                     /translation="MGQSNNVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIV
                     GTVIASPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIE
                     HLFGGVDIVILVAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWVGGFVHSLFQVLA
                     VYNLPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLTIIANGGAMCIVIFILLLLSYAI
                     ILRSLQNHSKEGRRKALSTCISHITVVFLFFVPCIFMYVRPVSSFPIDKSITVIYTIV
                     TPMLNPLIYTLRNSEMKNSMEKLLQKMLSPNRIKLSSCCSYD"
     exon            1..957
                     /gene="Or4a80"
                     /gene_synonym="MOR231-18; MOR231-19P; Olfr1253;
                     Olfr1253-ps1; Olfr1559-ps1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgggccaga gcaacaatgt cacagaattt gtcctgctgg gcttcactca ggatcctgct
       61 gggcaaaaag ctttatttgt tatgttttca ctgatgtaca ttgcaacaat ggtgggcaac
      121 ctgctcatcg tagggacagt gattgccagc ccctccttgg gctccccaat gtacttcttc
      181 cttgcctctc tgtcactcat ggatgctgtt tattccactg ccatctcacc caagttgatt
      241 gtagacttgc tccgtgagaa aaagaccatc tccttcagag cttgcataag ccagctcttt
      301 atagagcatt tgtttggtgg ggttgatatt gtcattctcg tggcaatggc ctatgatcgc
      361 tatgtggcca tctgtaagcc actgcattat ttgattatca tgaatcgacg ggtatgtatt
      421 cttttcttgg tgatggcctg ggtgggaggt tttgtacatt ctttgtttca agttcttgct
      481 gtatataatc ttcctttctg cggtcccaat atcattgacc actttggctg tgacatatac
      541 ccattattac tacttgcatg tactgacacc tacttccttg gcctcactat cattgctaat
      601 ggtggagcca tgtgtattgt catcttcatc ttactcctac tttcttatgc aataatccta
      661 agatctctcc agaatcacag taaggaaggg aggcgcaaag ctctgtccac ctgcatttcc
      721 catatcactg tggtttttct cttttttgtt ccctgtattt tcatgtatgt tagacctgtt
      781 tctagttttc ctattgataa atccatcact gtaatttata ccattgtcac tcccatgctg
      841 aatcctttaa tatatacttt gagaaattca gagatgaaaa attctatgga aaagctcctg
      901 cagaaaatgt taagtccaaa tagaataaag ctttcttctt gctgctcata tgactaa
//
