LOCUS       NM_172905               2350 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus olfactomedin 5 (Olfm5), mRNA.
ACCESSION   NM_172905
VERSION     NM_172905.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   3  (bases 1 to 2350)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   4  (bases 1 to 2350)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   5  (bases 1 to 2350)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            BC058791.1.
            
            On Dec 20, 2003 this sequence version replaced NM_172905.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC058791.1, BC048933.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN02415136
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 54.89 cM"
     gene            1..2350
                     /gene="Olfm5"
                     /gene_synonym="E030002O03Rik"
                     /note="olfactomedin 5"
                     /db_xref="GeneID:244180"
                     /db_xref="MGI:MGI:2443346"
     exon            1..83
                     /gene="Olfm5"
                     /gene_synonym="E030002O03Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..1502
                     /gene="Olfm5"
                     /gene_synonym="E030002O03Rik"
                     /codon_start=1
                     /product="uncharacterized protein LOC244180 precursor"
                     /protein_id="NP_766493.1"
                     /db_xref="CCDS:CCDS21612.1"
                     /db_xref="GeneID:244180"
                     /db_xref="MGI:MGI:2443346"
                     /translation="MQSDPALLASFLLLLPLVLPGQPQLVRNVLNSMDENGTFQCVVH
                     LPNNSIFLQQLDQLQSTLQELISKYEQELSRAKEYVHVIEDQDSQTLELSHMLESRNL
                     GVTVSQYDNPSFNLLRLELEGAQELAAQLKANGGVSGATDLLHQLQNQVTNASLTLKL
                     LVDSARQSFHALREEVDILEGQLSECEREKEQEQSSRHPGLPLAPGSCAHGGLQKVSR
                     PLVVKLNWRGLSSKAGAWGRDSAPSPASSLYWVAPLRADGRYFDYYRLHKSYGDLVLL
                     KHYEQWKMGYGDGSGNTVYKNFMYFNYYGTRDMAKVDLSSNTLVLRRPLPGATYNNRF
                     SYAFAPWTDIDFTGDEKGLWVLYATEESKGNLVVSLLNDSTLEVEQTWYTSQYKPALS
                     GAFMVCGVLYALRSLSTRQEEIFYAYDTTTGQEHHLSILLDKMLETLHGINYCPWDHR
                     LYVYNDGFLINYDLTFLTLKQKVPSSPMKRSSGALAPSKPIKLNKP"
     exon            84..236
                     /gene="Olfm5"
                     /gene_synonym="E030002O03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            237..461
                     /gene="Olfm5"
                     /gene_synonym="E030002O03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            462..627
                     /gene="Olfm5"
                     /gene_synonym="E030002O03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            628..787
                     /gene="Olfm5"
                     /gene_synonym="E030002O03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            788..2253
                     /gene="Olfm5"
                     /gene_synonym="E030002O03Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttggatcaa gatgcagtct gacccagctc ttttggcctc ctttctactg ctgctgcccc
       61 tggtgcttcc aggacagcct cagctggtga gaaatgtatt aaactctatg gatgagaatg
      121 gcactttcca gtgtgtggtc catctaccca acaactctat cttcctgcag cagctggatc
      181 agctacagag tacattacag gagctcatta gcaaatatga acaagaactg tccagggcca
      241 aggaatatgt acatgtcatt gaggatcaag acagtcagac tctagaactg agtcacatgc
      301 tggagtccag gaatctgggt gtcactgtgt cccaatatga caatccatcc ttcaatctgc
      361 tacgcctgga gctagaagga gcacaggagc tggcagctca gcttaaagcc aatggaggtg
      421 tcagtggagc cacagacctc ctccatcaac ttcagaacca ggtgaccaac gccagtctga
      481 ccctgaagct tctggtcgac tctgcccgcc aaagcttcca tgccctccga gaggaagtgg
      541 atattcttga gggccaacta agtgagtgtg agagggaaaa ggaacaggaa cagtcctcca
      601 gacaccctgg tctacccctg gctcctggtt cctgtgctca tggaggcctg cagaaagtga
      661 gcagacccct tgtggtaaag ctcaattgga ggggtttatc atctaaggca ggtgcctggg
      721 gtcgtgactc agcacccagt ccagcttctt ccctttactg ggtggctcct ctgcgtgctg
      781 atggcaggta ctttgactac tataggctgc acaaatccta tggtgacctg gtgctgctta
      841 agcactatga gcagtggaag atgggctatg gtgacggcag tggcaatacc gtgtacaaga
      901 acttcatgta ctttaactac tatggcacaa gagacatggc caaggtggac ctttcctcta
      961 acaccctagt gctgcgacgc ccattgcctg gtgccaccta caacaaccgc ttctcctatg
     1021 cttttgcgcc ttggactgac atagatttta ctggtgatga gaagggactg tgggtgttat
     1081 atgccacaga ggagagcaaa ggcaatctgg ttgtaagtct tctcaatgat agcaccctag
     1141 aagttgagca aacgtggtat accagccagt ataagcctgc tctttcaggg gccttcatgg
     1201 tctgtggggt gctctatgct ttgcgttcac taagcactcg tcaagaagaa atattttatg
     1261 cttatgacac aaccactggg caggaacacc acctcagcat cctgttggac aagatgctgg
     1321 aaactctgca cggcatcaat tactgccctt gggatcacag gctctatgtt tataatgatg
     1381 gattcttaat aaattatgac ctcaccttcc tgacactaaa gcaaaaggta ccgagctctc
     1441 ccatgaaaag gtcttctggg gctctagcgc catctaaacc tattaagctc aacaagccat
     1501 aggacactct atgactgtcc tctttcttcc ttctagaagg acaacttcct taatagctat
     1561 ccacccaaat gattgaagta cactgattaa tttagttttg tatgtaatca atatctcagt
     1621 caacacatta aggtgttaat aatggcctgg aaggaattga ttaagaaaca aaacacagtg
     1681 ttagttaggg tttgggagat agatgaatgc tgaatcacgt gtttagcatg taccaggccc
     1741 tagattcaat gcttagcaca gtgggaagaa aactcattat tcaattctta gcactaaaaa
     1801 caaaaacaaa aaaccctaaa aaccaaaaaa cccaataaaa caaaaaatta gctacagaaa
     1861 tgttgccctc tttttttctg atgcttgctc atcacgcttt aaaaattatc aggctagtcc
     1921 gcagaattct aggatcacgt gacctttagt tctcagggtt gagtgcatct ggagtcagca
     1981 tagaaaatcc atggaagtta gtattgagag tgaggtacag aagtttcctc tcagatctcc
     2041 atactcttga aaggttctgc agagaaggga ggcagaatct tggcctgaag ataaattctt
     2101 cactgacctc aactgacctt aaatttgagt aaaactggaa gaggcacttg ggcctgactg
     2161 tgttctagga tgtaaggcag tatttgtagc atgggatatg gatgggactg tggctcaaga
     2221 catactcaat aaagacttct tggtgtgatt gcaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2341 aaaaaaaaaa
//
