LOCUS       NM_025402               1243 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Mus musculus 2-oxoglutarate and iron-dependent oxygenase domain
            containing 3 (Ogfod3), mRNA.
ACCESSION   NM_025402
VERSION     NM_025402.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1243)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1243)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   3  (bases 1 to 1243)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK004005.1.
            
            On Apr 6, 2007 this sequence version replaced NM_025402.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK004005.1, AK145938.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1243              AK004005.1         2-1244
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 85.04 cM"
     gene            1..1243
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /note="2-oxoglutarate and iron-dependent oxygenase domain
                     containing 3"
                     /db_xref="GeneID:66179"
                     /db_xref="MGI:MGI:1913429"
     exon            1..160
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..1034
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /note="PKHD domain-containing transmembrane protein
                     C17orf101 homolog"
                     /codon_start=1
                     /product="2-oxoglutarate and iron-dependent oxygenase
                     domain-containing protein 3"
                     /protein_id="NP_079678.1"
                     /db_xref="CCDS:CCDS25770.1"
                     /db_xref="GeneID:66179"
                     /db_xref="MGI:MGI:1913429"
                     /translation="MAPQRRGPPRIPEGSSAAERRRATSTKKDRLPREAQRTWLRIVA
                     FGVGLALVTCLLWSSVGIDDDVAEVVARRGEVLEGRFIEVPCSEDYDGHRRFEGCTPR
                     KCGRGVTDIVITREEAEQIRRIAEKGLSLGGSDGGASILDLHSGALSVGKHFVNLYRY
                     FGDKIQNIFSEEDFQLYRDIRQKVQLTIAEAFGISASLLYLTKPTFFSRINSTEARTA
                     HDEYWHAHVDKVTYGSFDYTSLLYLSDYLEDFGGGRFVFMEEGSNKTVEPRAGRVSFF
                     TSGSENLHRVEKVLWGTRYAITIAFTCNPDHGIEDPVLT"
     exon            161..378
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            379..454
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            455..497
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            498..562
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            563..619
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            620..773
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            774..897
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            898..1243
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1169
                     /gene="Ogfod3"
                     /gene_synonym="1110031I02Rik"
                     /note="major polyA site"
ORIGIN      
        1 gttcccgcct cgctttcgct gtcgcagcta ttgccccgag tttggtggct ctcgtgtcgt
       61 agctggctct gcgacggctg ggcccgatgg cgcctcagcg gaggggacca cccagaattc
      121 ccgagggaag tagtgctgca gagcgccggc gcgcgaccag taccaagaag gaccggctgc
      181 ctcgggaggc acagaggaca tggctaagga ttgtggcctt tggggtcggc cttgctctgg
      241 tcacatgtct gctctggagt agtgtgggga tcgatgatga tgttgctgag gttgtggccc
      301 gtcgtggtga ggtcctagaa ggcaggttca ttgaggttcc ctgctctgag gactacgatg
      361 gtcaccgaag gtttgaaggc tgtaccccca ggaagtgtgg cagaggtgtc actgacatcg
      421 tcatcaccag ggaggaggcg gagcagattc gcagaatagc agagaaaggg ctctccctag
      481 gtggatcgga tggaggggca tctatcctgg acctgcactc tggagccttg tctgttggga
      541 aacactttgt gaacctgtat agatactttg gagataaaat acaaaatatc ttctctgagg
      601 aggactttca gttatatagg gacattcggc agaaggtcca gctcaccatc gcggaagctt
      661 tcggcatcag tgcatccttg ctgtacctga cgaagcccac atttttctcg cgaataaata
      721 gcacagaagc ccggacagct catgatgagt actggcacgc acacgtggac aaggtgacct
      781 acggctcttt tgactacact tcgctgcttt acctatcgga ttacttagag gacttcggtg
      841 gagggcgctt tgtgttcatg gaagaagggt ccaacaagac agtggagccc agagctggtc
      901 gagtctcatt ctttacctca ggctctgaga acctgcaccg agtggagaaa gtcctctggg
      961 gcacccgcta cgccatcacc atcgctttca cctgcaaccc ggaccacggc atcgaggacc
     1021 cagtactcac gtgaccagct aggtcaggtc ctgagtacca tgtcctgtca gagaaggcac
     1081 tcctaggccg ggtggagggt gtgttcatct ctcccacttc aggccattgc tgctgctcaa
     1141 tgtgccttat gaattatccc gagtctcaac ctgctgatgt tttaatcctt ttgtctgaga
     1201 gtaaatcaag gaaggagcct gttacccgag taacagctaa ccc
//
