LOCUS       NM_025671               1569 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus 2-oxoglutarate and iron-dependent oxygenase domain
            containing 2 (Ogfod2), transcript variant 1, mRNA.
ACCESSION   NM_025671 XM_001000315
VERSION     NM_025671.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Modzelewski,A.J., Shao,W., Chen,J., Lee,A., Qi,X., Noon,M.,
            Tjokro,K., Sales,G., Biton,A., Anand,A., Speed,T.P., Xuan,Z.,
            Wang,T., Risso,D. and He,L.
  TITLE     A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform
            essential for development
  JOURNAL   Cell 184 (22), 5541-5558 (2021)
   PUBMED   34644528
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Jerome-Majewska,L.A., Achkar,T., Luo,L., Lupu,F. and Lacy,E.
  TITLE     The trafficking protein Tmed2/p24beta(1) is required for
            morphogenesis of the mouse embryo and placenta
  JOURNAL   Dev Biol 341 (1), 154-166 (2010)
   PUBMED   20178780
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY126361.1, AK018534.1 and AU041636.1.
            
            On Jun 26, 2019 this sequence version replaced NM_025671.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.149949.1,
                                           SRR7345562.4059096.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-17                BY126361.1         22-38
            18-1565             AK018534.1         2-1549
            1566-1569           AU041636.1         4-7                 c
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 63.39 cM"
     gene            1..1569
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /note="2-oxoglutarate and iron-dependent oxygenase domain
                     containing 2"
                     /db_xref="GeneID:66627"
                     /db_xref="MGI:MGI:1913877"
     exon            1..146
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             18..1067
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     2-oxoglutarate and iron-dependent oxygenase
                     domain-containing protein 2"
                     /codon_start=1
                     /product="2-oxoglutarate and iron-dependent oxygenase
                     domain-containing protein 2 isoform 1"
                     /protein_id="NP_079947.1"
                     /db_xref="CCDS:CCDS19672.1"
                     /db_xref="GeneID:66627"
                     /db_xref="MGI:MGI:1913877"
                     /translation="MATAAQRRFCRCACFCSQNLYVARYGLHLRFRDEHQLRRDYGQL
                     LRSRGCVTSKDFQQLLEELEQEVGRRRRLGQESAVRKALIASSYHPARPEVYSSLQDA
                     ALAPEFMAAAEYSTSPGADLEGLLQRLETVSEEKRIYRVPVFSAKFCQTLLEELEHFE
                     QSDMPKGRPNTMNNHGVLMYELGLDDPLVTPLRERFLLPLMALLYPDYGGGYLDSHRA
                     FVVKYALGQDLDLGCHYDNAELTLNVALGKDFTGGALYFGGLFQAPAALKETLEVEHV
                     VGSGILHRGGQLHGARPLCKGERWNLVVWLRASAVRNRLCPMCCQKPELVDDEGFGDG
                     FTREEPTTVDVCVLT"
     exon            147..203
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            204..317
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            318..417
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            418..545
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            546..803
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            804..1569
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1130..1135
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1169
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
     regulatory      1551..1556
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /note="hexamer: TATAAA"
     polyA_site      1569
                     /gene="Ogfod2"
                     /gene_synonym="1300006G11Rik; 5730405M13Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggcgcggccg cttcgccatg gcgactgccg cccagcggcg cttctgccgc tgcgcctgct
       61 tctgctccca gaacctgtac gtggcgcgct acgggctgca cctgcgcttc cgggacgagc
      121 atcagctgcg ccgtgactac ggccagctcc tgcgcagccg tggttgtgtc acctccaagg
      181 acttccagca actcttggag gagcttgagc aggaggtcgg gcgccgccgc aggctgggac
      241 aggaatcggc tgtcaggaag gctctcattg ccagctccta ccacccggct aggcctgagg
      301 tctacagctc actgcaggat gctgctctgg cccccgagtt tatggctgca gctgaatata
      361 gtacgtcccc aggcgcagat cttgagggcc ttctccagcg tctggagaca gtgtcagagg
      421 agaagcgcat ctatcgggtg ccagtgttct cggccaagtt ctgccagacc ctgctggaag
      481 agctggagca ttttgagcag tcggacatgc ccaagggaag gcccaacacc atgaacaacc
      541 atggggtact gatgtatgaa ctaggcctgg atgaccccct ggtgaccccg ctgcgggaac
      601 gcttcctgct gccactgatg gccttgttgt acccagacta cggtgggggc tacctcgaca
      661 gtcaccgtgc ctttgtggtc aagtacgcac tgggccagga cctggatctg ggctgtcact
      721 acgataatgc tgagcttacc ctcaatgtgg ctctgggcaa ggacttcaca gggggtgccc
      781 tgtattttgg gggcctcttc caggcacccg cagccttgaa ggagaccctg gaagtggagc
      841 atgtggtggg ctctggtatc ctgcaccgtg gcggccagct gcacggggct cggcccctgt
      901 gtaagggaga gcgctggaac ctcgtcgtgt ggctgcgggc atctgctgtt cgaaatcgcc
      961 tctgtcccat gtgctgccag aagccagagc tggtggacga tgagggtttc ggtgacggct
     1021 ttacccggga ggagcccacc acagtggatg tctgtgtgtt gacttgagcc tggttctccc
     1081 ccagaggtgt tgatgctgaa aacttgccat tgtgggcagg gagggcagaa ataaagtctg
     1141 cagccgtgcc actccttggg tcaaaaggac acgcagactt ttgggtcatt ctttggacag
     1201 gtgatctgta gcaagcctta tttgagatga agtactgagg gtttggagtg gagcaggccc
     1261 aggaagagaa gaagtcagga aaagacatga cccctaggga gctctgactg aggagggagg
     1321 gttgcttcag tcagtggctc agagataggg ctgggcagac atctacctta ggtaaagtgg
     1381 ctccagggac ttaagtgaag ttcactactc ttatcagcag tgctggagag cggaggattg
     1441 ggggcgggga ttcagacttt ctgggttcac atctgtgttt tgcatgtcca gcagtggggc
     1501 tctggactcc ctagcgccct ggttgtggtg acagtccaac aagttgatat tataaagcac
     1561 tttataaca
//
