LOCUS       NM_145511               3255 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus odr4 GPCR localization factor homolog (Odr4),
            transcript variant 1, mRNA.
ACCESSION   NM_145511 XM_289795
VERSION     NM_145511.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3255)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY247764.1, CB235715.1, CX243768.1, AK152022.1, AC121113.13 and
            BE134939.1.
            
            On Oct 27, 2006 this sequence version replaced NM_145511.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.35817.1,
                                           SRR1660813.141975.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-400               BY247764.1         1-400
            401-943             CB235715.1         99-641
            944-1406            CX243768.1         192-654
            1407-2033           AK152022.1         827-1453
            2034-2034           AC121113.13        200406-200406       c
            2035-3240           AK152022.1         1454-2659
            3241-3255           BE134939.1         375-389
FEATURES             Location/Qualifiers
     source          1..3255
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 63.84 cM"
     gene            1..3255
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /note="odr4 GPCR localization factor homolog"
                     /db_xref="GeneID:226499"
                     /db_xref="MGI:MGI:2385108"
     exon            1..366
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            367..487
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     CDS             389..1732
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /EC_number="1.1.1.14"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein odr-4 homolog; olfactory specific odr-4; mODR-4"
                     /codon_start=1
                     /product="protein odr-4 homolog isoform 1"
                     /protein_id="NP_663486.2"
                     /db_xref="CCDS:CCDS15355.2"
                     /db_xref="GeneID:226499"
                     /db_xref="MGI:MGI:2385108"
                     /translation="MGRTYIVEETVGQYLSSINLQGKPFVSGLLIGQCSSQKDYVILA
                     TRTPPKEEQNDKVKQPRAKLDNLDEEWATEHASQVSRMLPGGLVVLGIFIITTLELAD
                     DFQNALRRLIFSMEKSMSRKRLWDVTEDEVSERVTLHICSSTKKISCRTYDVQDPKSS
                     ARPADWKYQSRVSASWLSLDCTVHVNIHIPLSATSVSYTLEKNTKSGLTRWAKQIENG
                     VYLINGQVKGNDCDLLEGQKKSRGNTQATAHSFDVRVLTQLLLNSDHRSTATVQICSG
                     SVNLRGNVKCRAYIHSNRPKVKDAVQAVKRDILNTVADRCEILFEDLLLNEIPEKKNY
                     ELPQRVFVPLPGSTVMLCDYKFGDESAEEIRDHFSEMLDHEIQIEDLEIAEEVNTACM
                     TSSVNSEASLTNTSEEQPEQPKKTIGVKIQQNIGVIAALAVAVLAAGISFHYFSD"
     exon            488..622
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            623..718
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            719..825
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            826..862
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            863..1003
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1099
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1100..1165
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1294
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..1385
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1386..1556
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1557..1664
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1665..3242
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3223..3228
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /note="hexamer: AATAAA"
     polyA_site      3242
                     /gene="Odr4"
                     /gene_synonym="1810053E15Rik; odr-4"
                     /note="major polyA site"
ORIGIN      
        1 agccaccctc gtccttatcc cggaggagca agacgacctt accgtcaaaa ccccgggatg
       61 tcatgggtac tcctctgtgg ccacttctag aagccgagcc accagaggtc atgggtcacg
      121 gcagggtgtc tcgacaggct ctgggctacc gccacgatct taacggtgcc ccgagagggg
      181 cggggtgcag gcctccctcg cttgggtaga agagctgcgg agatgggtgc gggacggctt
      241 gcgtcatcag tctgcacccg ttggggccgc gacccgcgtt tggagtagga agtgtctctg
      301 ctgtcgcttt ctgatgagat cattggctgt ggacgtgggg acctgagtgg cacctggcct
      361 ttgaaggctg ttgaattggc tgtctataat gggaagaacc tacattgtag aagagactgt
      421 tggccagtat ctttcaagca tcaacctcca gggaaaacct tttgtctctg gtcttttgat
      481 aggacagtgt tcttcacaaa aggattatgt gattcttgcc actagaacac cacccaaaga
      541 ggaacaaaat gacaaagtca aacagccgag agctaagttg gataatttgg atgaagaatg
      601 ggccacagaa catgccagcc aggtgtccag aatgctccct ggaggacttg tggttcttgg
      661 aatatttatt atcacaactt tagaactagc agatgatttt caaaatgccc tgcgcagact
      721 aatattttct atggaaaaat ctatgagtag aaaaagacta tgggatgtca cagaggacga
      781 ggtctcagaa cgagtgacac ttcacatttg ttcttctaca aaaaaaatat cttgtcgaac
      841 ttacgatgtc caagatccaa agagttcagc aagacccgca gattggaagt atcagagtag
      901 agtgtctgcc tcatggctgt ctctagactg tactgttcac gttaacattc acatcccact
      961 gtcggctact tctgtcagtt acactctgga aaaaaacaca aagagtggac ttacacgctg
     1021 ggccaagcaa atagaaaatg gtgtttatct gattaatgga caagttaaag gcaacgattg
     1081 tgacttatta gaaggacaga aaaaaagcag aggaaatacg caagcaactg ctcattcttt
     1141 tgatgtccga gtgctaacac agttgctcct gaattcggac cacagatcca cagccacagt
     1201 ccaaatctgc agtggttctg taaatcttcg gggaaatgtg aaatgcagag cttatatcca
     1261 tagcaacaga cccaaggtta aagatgctgt gcaggcagtg aagagagata ttttgaacac
     1321 agttgctgat cgctgtgaaa tactctttga ggacctgctt ctgaatgaaa ttccagaaaa
     1381 aaaaaattat gaacttcctc agagagtttt tgttcccctt cctggatcta ctgtaatgtt
     1441 atgtgactat aagtttggtg atgaatcagc tgaagaaatc agagaccatt tttcagagat
     1501 gttagatcat gagattcaaa tagaagactt ggaaattgca gaggaagtaa acacagcttg
     1561 catgacttcc tctgtgaata gtgaggcttc actgaccaac acaagtgaag aacaaccaga
     1621 acaaccaaaa aaaaccatag gagtgaaaat tcagcaaaac ataggtgtga tcgcagcact
     1681 agctgttgca gtgcttgctg cgggcatctc cttccattac ttcagtgatt agagctccct
     1741 gatcatccag aaatcacgga tcaacagcta cagaaaataa cgacatcaat gtccacctgc
     1801 actgaagcta gcaagcagct ctgctacgtt aacatctgtt agatgtgttt ctgacttaca
     1861 tgaaaccacc agctgccttg tttagccctg ctttgattat ctggcccagg tttccaaaag
     1921 taaactgtgc atctaaatgg agttgcatgt aacaaatcac tattatgtat tttcagaagg
     1981 gtcaaaatgt gagctattta agagtttagt gctttcaaaa aaaaaaaaaa aaaagtttag
     2041 tgctattgaa ccggatcaca cattgattag aatattgaaa gtttaagcag acagtagtaa
     2101 ctatagcaga tgtatcacta ggcattatct tcatcctaaa ggacttttct aatatgcacc
     2161 cagttgccgt agtttataga cactgtttaa attggaggcc atgaatatta ttttaagcat
     2221 acacatggac tgtggtttct tggatggcag atccagtagt agcactgcag aatgctgttt
     2281 gcctcaatcc agaaaagaga gaaatgtaaa tctgagatgc tatcctagtt agggaagtta
     2341 atattcagca gctccccctt gtagttctgt gtagctagct cctggcagaa ataaactaga
     2401 aacactccta acttaggccc aagactccca taagttatga tcaagcaata tttcttcctg
     2461 attctatatc atgaggtaca agatgcagtg agactgggag aaataaacta taggaaaaac
     2521 acattgaagt catttcccaa ggttcacgtc aacaatgtag agagtaacag gtgggtagag
     2581 ccacagtgtg ggtgaaagcc aagtagtgct cctcagaatg aggaggagag gaaactgtgg
     2641 gctgtttagt gggagtggac ttggctgaag agaccagaga atggaaggta gagcagcagg
     2701 aaggctggga ggagtgagga gggacaaggt ctaggaggac caggaggcgg gaatgggaga
     2761 gaggcagcac ttagacaaca ggtttctgca cactcgttac caaacaggct tataattgaa
     2821 gaaacaaaca aacaaacaaa taattcacaa gtgaatcaag tatgaaacaa ggttcctaaa
     2881 aagccaaaga ggtgataaag atgcccagct aaggcaactc agtcacatgc atagtagacc
     2941 ggaagcaaca gtttacccaa gaaggtggta aaatctcttc atagttgtga gggcaactga
     3001 aaatcagtgc aaagtgaaac tcagaaacaa accgttatta cagaactgaa aaaggatggt
     3061 ccttgataag aagaattcct caagaagcaa gctttgaaag tgaagtgtta atgagcagac
     3121 aaaacgatca atattgtaaa tctaaagtgt tatttgtata caaaaatcat aatgaagtat
     3181 ttaaagaaat tgtaatagaa attgtaaaca aatgtaacac cgaataaata ttgttaatgc
     3241 aaaaaaaaaa aaaaa
//
