LOCUS       NM_145746               1289 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus outer dense fiber of sperm tails 4 (Odf4), mRNA.
ACCESSION   NM_145746 XM_908462
VERSION     NM_145746.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1289)
  AUTHORS   Ito,C., Makino,T., Mutoh,T., Kikkawa,M. and Toshimori,K.
  TITLE     The association of ODF4 with AK1 and AK2 in mice is essential for
            fertility through its contribution to flagellar shape
  JOURNAL   Sci Rep 13 (1), 2969 (2023)
   PUBMED   36804949
  REMARK    GeneRIF: The association of ODF4 with AK1 and AK2 in mice is
            essential for fertility through its contribution to flagellar
            shape.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1289)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 1289)
  AUTHORS   Nakamura,Y., Tanaka,H., Koga,M., Miyagawa,Y., Iguchi,N., Egydio de
            Carvalho,C., Yomogida,K., Nozaki,M., Nojima,H., Matsumiya,K.,
            Okuyama,A. and Nishimune,Y.
  TITLE     Molecular cloning and characterization of oppo 1: a haploid germ
            cell-specific complementary DNA encoding sperm tail protein
  JOURNAL   Biol Reprod 67 (1), 1-7 (2002)
   PUBMED   12079992
  REMARK    GeneRIF: oppo 1 plays an important role in sperm tail structure
            and/or sperm movement
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU961575.1, AB074438.1 and BC060992.1.
            
            On Dec 16, 2009 this sequence version replaced NM_145746.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB074438.1, SRR5189673.261445.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164141
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-161               BU961575.1         3-163
            162-1007            AB074438.1         130-975
            1008-1289           BC060992.1         1051-1332
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 42.19 cM"
     gene            1..1289
                     /gene="Odf4"
                     /gene_synonym="Oppo1"
                     /note="outer dense fiber of sperm tails 4"
                     /db_xref="GeneID:252868"
                     /db_xref="MGI:MGI:2182079"
     exon            1..161
                     /gene="Odf4"
                     /gene_synonym="Oppo1"
                     /inference="alignment:Splign:2.1.0"
     CDS             115..987
                     /gene="Odf4"
                     /gene_synonym="Oppo1"
                     /note="testis-specific protein oppo 1; outer dense fiber
                     of sperm tails protein 4"
                     /codon_start=1
                     /product="outer dense fiber protein 4"
                     /protein_id="NP_665689.1"
                     /db_xref="CCDS:CCDS24872.1"
                     /db_xref="GeneID:252868"
                     /db_xref="MGI:MGI:2182079"
                     /translation="MEPDLNEEESERIRTSRNRRSLEHRRNSLLPFQWKATNNSRWMA
                     QVVASEFSLVAFLLLLVMVFSKKWLYPSKSRFHQRYPQNVTKRVYTSIHSMSTGLLYI
                     CVSKSCPSSDNGEDNFKMWTIHPVFGVAKISFTLAIGLGFVLTTWLHLPYLPCLQRMP
                     FFGLIGIILSFCEVTLIFLTLLLFPVNLWIYELRKNISVPIGWSYFIGWLVLILYFTC
                     GILCYLNHKNYWSLIMSSTTINTACSSLGPESLVSPSQTPSSQENSQESPKDDQKPSS
                     PDKVVSPPQPDTTG"
     exon            162..460
                     /gene="Odf4"
                     /gene_synonym="Oppo1"
                     /inference="alignment:Splign:2.1.0"
     exon            461..634
                     /gene="Odf4"
                     /gene_synonym="Oppo1"
                     /inference="alignment:Splign:2.1.0"
     exon            635..769
                     /gene="Odf4"
                     /gene_synonym="Oppo1"
                     /inference="alignment:Splign:2.1.0"
     exon            770..1110
                     /gene="Odf4"
                     /gene_synonym="Oppo1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1090..1095
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Odf4"
                     /gene_synonym="Oppo1"
                     /note="hexamer: AATAAA"
     polyA_site      1110
                     /gene="Odf4"
                     /gene_synonym="Oppo1"
                     /note="major polyA site"
ORIGIN      
        1 attccatggc agttagggtc tgctcagcgg gatggggaga agccttctct tggatctgga
       61 gctcaggtgc ctgaaaagag gtccccccat tcttgctcag acactaggcc tgtgatggaa
      121 cctgacttga atgaggaaga atccgagagg ataaggacca gcaggaacag gcggtcactg
      181 gagcatcgtc gcaactccct attgcccttt caatggaaag caacaaacaa ctctcgctgg
      241 atggcccagg tggtggcctc agagttcagc ctggtggcct tcctcctgct cctagtcatg
      301 gtcttctcca agaaatggtt gtatccctct aagagtcgtt tccatcagcg ctacccccaa
      361 aatgtcacca agagagtcta cacctccatc cacagtatgt ccacagggct cctgtacatc
      421 tgcgtatcta aaagctgccc cagctcagac aacggagaag acaattttaa gatgtggaca
      481 atccatccag tttttggggt ggctaagata agtttcaccc tggccatagg gctgggtttt
      541 gtcctcacca cctggctgca cctgccctac ctgccctgct tgcagagaat gcctttcttt
      601 ggcctgattg gaatcatcct gagcttctgt gaagtcacct taattttcct caccctcctg
      661 ttgttccctg ttaacctctg gatctacgag ctgaggaaga atatatcggt tcccatcggc
      721 tggagctatt tcattggttg gctggtgctc atcctgtatt tcacttgtgg gattctttgc
      781 tacctcaacc ataaaaacta ctggagtctg ataatgagca gcaccaccat caacactgct
      841 tgcagcagct tagggccaga gtctctggtg agtccctccc agacccccag cagccaggag
      901 aacagccagg agtctcctaa ggatgaccaa aagccatcaa gtccagataa agtagtctca
      961 ccaccccagc cagacaccac tggctaggac tgtcctcatc gtgaccaagg aggagcaaag
     1021 gaggatttgg ggaccagctt tgcattcctc ttcctcaact tggctttgtc tgtggctcag
     1081 gtgatgtgga ataaattgcc catgtcttca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1141 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
