LOCUS       NM_001364168            2598 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus outer dynein arm docking complex subunit 1 (Odad1),
            transcript variant 1, mRNA.
ACCESSION   NM_001364168 XM_006540771
VERSION     NM_001364168.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2598)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2598)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK042062.1, BC100373.1, AK135860.1 and AC149053.3.
            
            On Jun 9, 2018 this sequence version replaced XM_006540771.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.3833108.1,
                                           SRR7652917.919448.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-28                AK042062.1         145-172
            29-265              BC100373.1         1-237
            266-2591            AK135860.1         129-2454
            2592-2598           AC149053.3         12743-12749         c
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 29.6 cM"
     gene            1..2598
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /note="outer dynein arm docking complex subunit 1"
                     /db_xref="GeneID:211535"
                     /db_xref="MGI:MGI:2446120"
     exon            1..172
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            173..264
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     CDS             195..2279
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain-containing protein 114; coiled-coil
                     domain containing 114"
                     /codon_start=1
                     /product="outer dynein arm-docking complex subunit 1
                     isoform 1"
                     /protein_id="NP_001351097.1"
                     /db_xref="GeneID:211535"
                     /db_xref="MGI:MGI:2446120"
                     /translation="MRLGPPTRSARSEEGSEIFLEGSVDGELSRLQRQCKMMELERRA
                     YSKEVHQRLRKQVEEIRQLEMLRAKLQTQINVAQSQVKRLGDKKHLAEMECLLKSRAQ
                     VQVEIEALQEQNRALDKQIQDWETHVLTQSKEASAPDLIMYQKMKIQRRIRILEDQLD
                     RVTCHFDIHLVRNAALREELELLRIERGRYLNMDRKLKKEIHLLREMVGALSTSSTSA
                     YTAREEAKTKMGMLQERAEKELAQSDTEAQILLRQISHLEQLHRFLKLKNDERQPDPR
                     VVQKAEQRDWEVSEGLRKTSQEKLVLRYEDTLGKLAQLTGESDPDLLVEKYLELEERN
                     FAEFNFINEQNSEIHHLQEEIKEMQEALVSEHASQDKQRMQQEQQCKMLQQDVDKMCS
                     ESEQLEGRFQVLRGQLEKIKTDIQVLFDKAKCDSSVIKDLLGVKTYMRDRDIGLFLST
                     IERRLVQLLTVQAFLQVQNLAPLADAALLALGQSLQEPSKKTTPLKPPDTMEDSSGAV
                     IKEDYPMSKEELLSQVMKSLQLQDEEESAKKLDSSPSLTLSSPQISLVTVPKHSKKTS
                     VVPESILSHKTNRGRGTGSVSHVTFGDSASAAGPVAMASASASGAPVSSRSSQGGRGG
                     FKPTSSSSYLGSTGYLETSRGRESTAGGVHSQSMGSELSRGLSSSSGHASSPAPPSRP
                     SSSTSKDSRGYN"
     exon            265..364
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            365..554
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            555..677
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            678..791
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            792..859
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            860..1047
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1182
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1265
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            1266..1434
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            1435..1598
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            1599..1696
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            1697..1775
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..2598
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2571..2576
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /note="hexamer: AATAAA"
     polyA_site      2598
                     /gene="Odad1"
                     /gene_synonym="Ccdc114"
                     /note="major polyA site"
ORIGIN      
        1 agactacaac agtgagagtg gagctacagc gactggtcag gcactcaagc aggtagaacc
       61 ttgacctcgc ctcccacccc accccaatcc ggccggggtt ccgaggtgcg gagaagctgc
      121 ccagggaccg agtctgagtc aagccgcagg gtccagattg tgtgtttttg gggagctcca
      181 ccgctatgtc gaggatgcgt ttgggtccac ccaccaggag cgcccgctcc gaagaaggaa
      241 gcgagatctt cctggaggga tcagtggatg gggagctcag ccgcctgcaa cggcagtgca
      301 agatgatgga gttggaaagg cgggcataca gcaaggaagt tcatcagcgc ctcaggaagc
      361 aagtcgagga gattcggcag ctggagatgc ttcgagccaa gctccagacg cagattaacg
      421 tagcgcagag ccaggtcaag cgactgggag acaagaagca tttggcggaa atggaatgtc
      481 ttctcaagtc tcgggcccag gtgcaggtgg aaatcgaggc gctgcaagag cagaaccggg
      541 ccctggacaa gcagatccag gactgggaga cccatgtcct cacgcagagt aaggaggcct
      601 cggctcccga tctcatcatg taccagaaga tgaaaatcca gagaaggatc aggatccttg
      661 aagaccagct ggacagggtc acctgtcatt ttgacatcca tctggtgagg aatgcagccc
      721 tgcgggagga gctggagctg ctgcgcatcg agaggggccg ctacctgaat atggaccgca
      781 agctgaagaa ggagatccac ctactccggg agatggttgg agctctcagc acatcctcta
      841 cttctgctta tactgccagg gaagaggcca agaccaagat gggcatgctt caggagcgcg
      901 cagagaagga gctggctcag agtgatacgg aggcacagat cttgctgcga cagatatcgc
      961 atctggagca gctgcatcga ttccttaagc tcaagaacga tgaacgacaa ccggatcccc
     1021 gtgtggtgca aaaggcagaa cagcgagact gggaagtgtc agaaggactc cgaaagacct
     1081 cccaagagaa gctagtgctg cgttatgagg acactctggg caaactggcc cagctgaccg
     1141 gcgagagcga ccctgacctt ttggtggaga aatacctgga gttggaggaa cgcaactttg
     1201 ctgagtttaa cttcatcaat gagcagaact ccgagataca ccaccttcag gaggagatca
     1261 aagagatgca ggaagcctta gtcagtgagc atgccagtca ggataaacag cgcatgcagc
     1321 aagagcagca gtgcaaaatg ttgcagcagg atgtggacaa gatgtgttct gagtcagagc
     1381 agctggaggg tcgcttccag gtgctccgag gtcagctgga aaaaatcaag actgatatcc
     1441 aggtgctctt cgacaaggct aagtgtgaca gcagtgtcat caaggatctc cttggggtca
     1501 agacctacat gcgggacagg gacataggcc tcttcctgag taccattgag aggcggctgg
     1561 tgcagctcct cactgtgcag gccttcctcc aggtccagaa ccttgcccct ttggctgatg
     1621 ctgcacttct agcactgggc cagagcctac aggaaccctc caagaagacg actccactca
     1681 agcctcctga taccatggag gactcctcag gggctgtaat caaagaggat taccctatga
     1741 gcaaggagga gttgctaagc caagtcatga agtcgctgca gctccaggac gaggaggagt
     1801 ccgccaagaa gctggacagc agcccgagct tgactctctc cagtccacag atctccctgg
     1861 tcactgtccc caagcattcc aagaagacca gtgtagtccc cgaatccatc ctgagccaca
     1921 agacgaaccg aggccgtggc actggctccg tgagccatgt cacctttggt gactctgcct
     1981 ctgctgcagg ccctgtggcc atggcttctg ccagtgccag tggagcacct gtgtccagtc
     2041 ggagctccca ggggggccgt gggggcttca aacccacgag ctccagcagc tacctggggt
     2101 ctacaggcta cctagagacc agcagaggcc gcgagagcac agcaggcggc gttcacagcc
     2161 agagcatggg atctgagttg agtagaggcc tcagttccag cagtggccat gcatccagtc
     2221 ctgcccctcc ctccaggccc agctcctcta ctagcaagga ctccaggggc tacaactagg
     2281 gctgcgggtc ccttcctgcc tcaactcttg gcaggttttc taatgtctgc cctgcttctc
     2341 cctagagact cctttctaat ccctgtaagc ccaggcctct tcggtttccc tctgtctctt
     2401 cccatctttc cccatggtta ctgcctctgc cttggccttg cctctctgtt ctcatcctcc
     2461 ttgtttccca tctttacctc ctcatctctc tcccaagctt ccctccatcc tatgtctctg
     2521 tctcctaact ggattgccct ccattgacta ggtgaactgt aactatagga aataaaggtc
     2581 agagccctgt ttttccaa
//
