LOCUS       NM_029865               1652 bp    mRNA    linear   ROD 06-OCT-2024
DEFINITION  Mus musculus occludin/ELL domain containing 1 (Ocel1), transcript
            variant 1, mRNA.
ACCESSION   NM_029865 XM_134253
VERSION     NM_029865.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK163762.1, AK020528.1, BY542600.1 and AC127416.7.
            
            On Aug 26, 2009 this sequence version replaced NM_029865.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK155219.1, BC019407.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-286               AK163762.1         2-287
            287-892             AK020528.1         1-606
            893-1119            BY542600.1         165-391
            1120-1652           AC127416.7         35751-36283
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 34.43 cM"
     gene            1..1652
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /note="occludin/ELL domain containing 1"
                     /db_xref="GeneID:77090"
                     /db_xref="MGI:MGI:1924340"
     exon            1..688
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             378..1037
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     occludin/ELL domain-containing protein 1"
                     /codon_start=1
                     /product="occludin/ELL domain-containing protein 1 isoform
                     1"
                     /protein_id="NP_084141.2"
                     /db_xref="CCDS:CCDS22391.1"
                     /db_xref="GeneID:77090"
                     /db_xref="MGI:MGI:1924340"
                     /translation="MQIHAGPASRRGRRGPLARLSGPEATCNSRPAARGRQRAAAPRM
                     PAPERPRSRRPQSQPGPGELCVRPRKIVFADELRPREPLHPEKHPRDLGPRLNPVPDY
                     ELKYPPVTNRRDRSRYAAVFQDQYGEFSELQREVGATQAKLQQLEALLLSLPPPRSQK
                     EARMAAHVRREFEKKRGDPGFLDKQARCNYLKGKLRHLKAQIRKFDDQQDSNSEDSVY
                     F"
     exon            689..854
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            855..908
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1652
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1099..1104
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      1121
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /note="major polyA site"
ORIGIN      
        1 cccgccctag cggccgagcg cccgtgccaa cggctccacc cgcagttcct gcacagctgc
       61 gttcccggcg gcagggccag acggggctct gggacaggtg acaccgagtg ggatcctcgg
      121 ataaccacag gcgggcgggg gctggaagct ttgtgggccg taaccccgcg aggcaagagg
      181 cgaaggggtc gtctcgactc ggaccccagt cgccctccgc tgctttgcgc tcttccggtt
      241 tcaagaatgg ggcggggccc gcgctgcacc gccagccact ctcgagcatg acgccgcggt
      301 gacgtcgcgg cgcctcgtca gtgccccttt ccgggatccg cactctgggt tgcgcggcca
      361 gccaaccgcg ctcgcgtatg caaatacatg caggtcccgc ctccaggcgc ggccggcggg
      421 gtcctctggc caggctctca ggcccggaag ccacttgcaa ttcgcgccct gccgccaggg
      481 ggcgccagag agctgcagcc ccacgcatgc ctgccccgga gcgtccgcgc tccagacggc
      541 cgcagagcca gcccgggccg ggagagctct gcgtgaggcc ccggaagatc gtgtttgcgg
      601 atgagctgcg cccccgggag ccactgcacc ctgagaagca tcccagagat ctgggacccc
      661 gcctcaaccc agtacctgac tacgagctta agtacccacc agtgaccaac agaagggacc
      721 ggagccgcta tgccgcagtg ttccaggacc agtatggcga gttctcggag ctccagcggg
      781 aggtgggggc cacacaggct aagctccagc aactggaggc cctgctgctg tcgctgcccc
      841 cgccacgaag ccagaaggag gctcgcatgg cagctcatgt caggagagag tttgagaaga
      901 agcgagggga tcctggcttc ctggataagc aggctcgctg taactacctg aagggtaaac
      961 tcaggcacct caaggcccag atccgcaaat ttgatgacca gcaggacagc aacagtgaag
     1021 actctgtgta cttctgagtg tcctggagat ggtggcgggc tcctcctcca ataggaaacc
     1081 acaccagttc ttccagggag taaacatgga ttagacacct actgtgtgca gctacctaaa
     1141 agcatccctt cattttacag aaggggaaat gaggttcata gacctgtctg aggtctcata
     1201 tgggggcaat ggctgtgtag attccagggg gcatagtcag aaggcatgag ttggggcagc
     1261 ctggcataag tattgtgatg gggcatacta ggggtaaggg ctgggcaatg cttggggcct
     1321 gcctgcaggg gcgcaatcca ggacaccttg atcctgtcca ctctgcatag ctcctcagat
     1381 gaaactaacc tgagccactg aggatgacaa gtcccaggcc acttgcaggc caggagtctc
     1441 ctaggaagat gtcttccaac agagaggacc acatgtgtgg agtttgtagt aaaagtagat
     1501 cagctagggc ttgaacgcag gcctcgggct caataggcat ggatctcact cagtcccact
     1561 ccacagttgg gcccctaact ccctggtatt ttttgttttc caaggctggg tttctctgtt
     1621 tagcactatc cttaaactca ctatatagac ca
//
