LOCUS       NM_001293800            1486 bp    mRNA    linear   ROD 06-OCT-2024
DEFINITION  Mus musculus occludin/ELL domain containing 1 (Ocel1), transcript
            variant 2, mRNA.
ACCESSION   NM_001293800 XM_006509796
VERSION     NM_001293800.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1486)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1486)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK163762.1.
            
            On Jun 21, 2014 this sequence version replaced XM_006509796.1.
            
            Transcript Variant: This variant (2) lacks an alternate exon
            compared to variant 1, that causes a frameshift. The resulting
            isoform (2) has a shorter and distinct C-terminus compared to
            isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK163762.1, BI904026.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1486              AK163762.1         2-1487
FEATURES             Location/Qualifiers
     source          1..1486
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 34.43 cM"
     gene            1..1486
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /note="occludin/ELL domain containing 1"
                     /db_xref="GeneID:77090"
                     /db_xref="MGI:MGI:1924340"
     exon            1..688
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             378..785
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /note="isoform 2 is encoded by transcript variant 2;
                     occludin/ELL domain-containing protein 1"
                     /codon_start=1
                     /product="occludin/ELL domain-containing protein 1 isoform
                     2"
                     /protein_id="NP_001280729.1"
                     /db_xref="CCDS:CCDS80892.1"
                     /db_xref="GeneID:77090"
                     /db_xref="MGI:MGI:1924340"
                     /translation="MQIHAGPASRRGRRGPLARLSGPEATCNSRPAARGRQRAAAPRM
                     PAPERPRSRRPQSQPGPGELCVRPRKIVFADELRPREPLHPEKHPRDLGPRLNPVPDY
                     ELRRLAWQLMSGESLRRSEGILASWISRLAVTT"
     exon            689..742
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            743..1486
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      933..938
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      955
                     /gene="Ocel1"
                     /gene_synonym="9430098E02Rik"
                     /note="major polyA site"
ORIGIN      
        1 cccgccctag cggccgagcg cccgtgccaa cggctccacc cgcagttcct gcacagctgc
       61 gttcccggcg gcagggccag acggggctct gggacaggtg acaccgagtg ggatcctcgg
      121 ataaccacag gcgggcgggg gctggaagct ttgtgggccg taaccccgcg aggcaagagg
      181 cgaaggggtc gtctcgactc ggaccccagt cgccctccgc tgctttgcgc tcttccggtt
      241 tcaagaatgg ggcggggccc gcgctgcacc gccagccact ctcgagcatg acgccgcggt
      301 gacgtcgcgg cgcctcgtca gtgccccttt ccgggatccg cactctgggt tgcgcggcca
      361 gccaaccgcg ctcgcgtatg caaatacatg caggtcccgc ctccaggcgc ggccggcggg
      421 gtcctctggc caggctctca ggcccggaag ccacttgcaa ttcgcgccct gccgccaggg
      481 ggcgccagag agctgcagcc ccacgcatgc ctgccccgga gcgtccgcgc tccagacggc
      541 cgcagagcca gcccgggccg ggagagctct gcgtgaggcc ccggaagatc gtgtttgcgg
      601 atgagctgcg cccccgggag ccactgcacc ctgagaagca tcccagagat ctgggacccc
      661 gcctcaaccc agtacctgac tacgagctaa ggaggctcgc atggcagctc atgtcaggag
      721 agagtttgag aagaagcgag gggatcctgg cttcctggat aagcaggctc gctgtaacta
      781 cctgaagggt aaactcaggc acctcaaggc ccagatccgc aaatttgatg accagcagga
      841 cagcaacagt gaagactctg tgtacttctg agtgtcctgg agatggtggc gggctcctcc
      901 tccaatagga aaccacacca gttcttccag ggagtaaaca tggattagac acctactgtg
      961 tgcagctacc taaaagcatc ccttcatttt acagaagggg aaatgaggtt catagacctg
     1021 tctgaggtct catatggggg caatggctgt gtagattcca gggggcatag tcagaaggca
     1081 tgagttgggg cagcctggca taagtattgt gatggggcat actaggggta agggctgggc
     1141 aatgcttggg gcctgcctgc aggggcgcaa tccaggacac cttgatcctg tccactctgc
     1201 atagctcctc agatgaaact aacctgagcc actgaggatg acaagtccca ggccacttgc
     1261 aggccaggag tctcctagga agatgtcttc caacagagag gaccacatgt gtggagtttg
     1321 tagtaaaagt agatcagcta gggcttgaac gcaggcctcg ggctcaatag gcatggatct
     1381 cactcagtcc cactccacag ttgggcccct aactccctgg tattttttgt tttccaaggc
     1441 tgggtttctc tgtttagcac tatccttaaa ctcactatat agacca
//
