LOCUS       XM_006534958            2553 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus nucleoporin 54 (Nup54), transcript variant
            X3, mRNA.
ACCESSION   XM_006534958
VERSION     XM_006534958.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006534958.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..2553
                     /gene="Nup54"
                     /gene_synonym="3110079L04Rik; 54kDa"
                     /note="nucleoporin 54; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 22 ESTs, 795 long
                     SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 18 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:269113"
                     /db_xref="MGI:MGI:1920460"
     CDS             905..1888
                     /gene="Nup54"
                     /gene_synonym="3110079L04Rik; 54kDa"
                     /codon_start=1
                     /product="nuclear pore complex protein Nup54 isoform X1"
                     /protein_id="XP_006535021.1"
                     /db_xref="GeneID:269113"
                     /db_xref="MGI:MGI:1920460"
                     /translation="MPNNKDEDGLVVLIFNKKETDIRSQQQQLVESLHKVLGGNQTLT
                     VNVEGIKTLPDDQTEVVIYVVERSPNGTSRRVPATTLYAHFEQANIKAQLQQLGVTLS
                     MTRTELSPAQIKQLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQ
                     DQMTKQHQTRLDIISEDISELQKNQTTTMAKIAQYKRKLMELSHRTLQVLIKQEIQRK
                     SGYAIQADEEQLRVQLDTIQGELNAPTQFKGRLNELMSQIRMQNHFGAVKSEEKYYID
                     ADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLVEHGLNETIHSRGGVFS"
ORIGIN      
        1 cggtccggct ggggggtccc ggggttgccc tggcactcgg gacaccttgg agtcatttgg
       61 agagggcggt ggcggtggtg gcggcggcgg tggcggtggg agggccgcgg gctgctcagg
      121 ctcagcctgg ggctcgcaca gcacgctcaa cccgcgtggc tcggccgccg cggtgcttcc
      181 cgccattggg gtgtccgccc aggagaggcc ggaggctacg cccctctcat ttcccgggac
      241 cccgcgtccc ctcgtccgtc tcagcctcaa ggtccagacg ggtaaagttg gagccaggct
      301 gcccgcagct ccctctgtcc cctccccagc ccgggggggg gggatgctcg gcccccgccc
      361 gtgctgccct tcgctccttc tgtctgtccg caccttggct ttcttcccct gatccggtgc
      421 aggtgggttt ggaggatttg gaacaacaac tacaactgca ggctctgcct tcagcttttc
      481 agccccaaca aacacaggca gtacaggcct tctcggtggc actcagaaca aaggttttgg
      541 ctttggtact ggttttggca caacgacggg aactggcact ggtttaggca ctggcttggg
      601 aaccggactt ggatttggag gatttaatac ccagcagcag cagcagcagc agcagacttc
      661 tttaggtggt ctcttcagtc agccgaccca ggctcctgca cagtctaccc agctcatcaa
      721 cactgccagc gcactttctg ctccaacgct actgggggat gagagagacg ccatcttggc
      781 aaagtggaac cagttgcagg ccttctgggg aacaggaaaa ggatatttca ataataacat
      841 tcctccagtg gagtttaccc aggagaatcc cttttgccgg tttaaggctg taggctatag
      901 ttgtatgccc aataataaag atgaagatgg actagtagtt ttaattttca acaaaaaaga
      961 aacagatatt agaagccagc aacagcaatt ggtagaatca ttgcataaag ttttgggagg
     1021 aaaccagacc cttacggtca atgtggaggg cattaagacg ttgccggatg atcagacgga
     1081 agttgtcatt tatgttgttg agcgttctcc aaatggcacc tcgagaagag ttccagcgac
     1141 aacactgtat gcccactttg agcaagccaa cattaaagcc cagctgcagc agcttggggt
     1201 gaccctttct atgaccagga cagagctgtc tcccgctcag atcaagcagc tcttacaaaa
     1261 ccctcccgca ggtgttgatc ctattatttg ggaacaggcc aaggtggata acccagactc
     1321 tgaaaagtta attcctgtac caatggtggg tttcaaagaa ttgcttcgaa gactgaaggt
     1381 tcaagatcag atgactaagc agcatcagac cagactagat atcatatctg aagatattag
     1441 tgaactgcaa aaaaatcaaa ctacgactat ggccaaaata gcacaataca agaggaaact
     1501 gatggagctc tcccacagga ccttacaggt cctaatcaaa caggaaatcc agaggaagag
     1561 tggctatgcg atccaggctg atgaagagca gttgcgggtt cagctagata ctattcaagg
     1621 ggaactgaat gcgcccactc agttcaaagg tcggctgaat gagctgatgt cccagatcag
     1681 gatgcagaat cattttggag ccgtgaaatc tgaagaaaag tactacatag atgcagacct
     1741 gttacgagaa atcaagcagc atttgaaaca acaacaggaa ggccttagcc acttgattag
     1801 catcataaaa gatgacctag aagacataaa actggtagaa catggattga atgagaccat
     1861 ccatagcaga ggcggtgtct ttagctgacc gtttacagac ttgttgcaga gattgataaa
     1921 atgcgtctcc ttgctacatc gagccttctt cacgatgacc acatggccgg ggaaaaggat
     1981 gcttctcctc actgggatgt ctgcgatcct cagaggttac tgtacgttaa atctgaaatg
     2041 gtcaccacaa agcccttcaa agagaatctt tgaaaagttt atatctaaaa gctgtattta
     2101 cttttaaaga agtgttaccc aaagcataca ctgttgttca ttttataaca gcgttaagcg
     2161 tagtcacgga gcctgatggt tattctccgt tctcctctcc atagcacaga gcgccacaga
     2221 gctacttcct acatgacaca acaaactggg attccatgcc tgttggaggc tgtgcttcag
     2281 ggtataaatg catttcagct tttatatctg tgaaatcagc tgtggagagt aaagaaaatc
     2341 ccaaagtatt taatgatttg tgtggttttc cttttgttct agaaagactt gaaaatatat
     2401 ttttatatta ttttacttat ttagaactta cagaaaatac ctaaccggtt aggatatgac
     2461 aaaatcacca cttttgcaag ctgttttgtt ttgttttgtt tttttatttc taaaaatgaa
     2521 atccttaaaa taaattgtta atttgtaatt tta
//
