LOCUS       NM_145706               1290 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus nucleoporin 43 (Nup43), mRNA.
ACCESSION   NM_145706
VERSION     NM_145706.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1290)
  AUTHORS   Suntharalingam,M. and Wente,S.R.
  TITLE     Peering through the pore: nuclear pore complex structure, assembly,
            and function
  JOURNAL   Dev Cell 4 (6), 775-789 (2003)
   PUBMED   12791264
  REMARK    Review article
REFERENCE   2  (bases 1 to 1290)
  AUTHORS   Nelson,P.S., Pritchard,C., Abbott,D. and Clegg,N.
  TITLE     The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
  JOURNAL   Nucleic Acids Res 30 (1), 218-220 (2002)
   PUBMED   11752298
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ073726.1, AK090019.1, BF607996.1 and DV046453.1.
            
            On Jan 31, 2008 this sequence version replaced NM_145706.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK146262.1, AK012191.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-242               CJ073726.1         4-245
            243-245             AK090019.1         206-208
            246-947             BF607996.1         14-715
            948-1281            AK090019.1         911-1244
            1282-1290           DV046453.1         756-764
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 2.28 cM"
     gene            1..1290
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /note="nucleoporin 43"
                     /db_xref="GeneID:69912"
                     /db_xref="MGI:MGI:1917162"
     exon            1..178
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /inference="alignment:Splign:2.1.0"
     CDS             59..1201
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /note="nucleoporin 43kDa; nup107-160 subcomplex subunit
                     Nup43"
                     /codon_start=1
                     /product="nucleoporin Nup43"
                     /protein_id="NP_663752.2"
                     /db_xref="CCDS:CCDS48493.1"
                     /db_xref="GeneID:69912"
                     /db_xref="MGI:MGI:1917162"
                     /translation="MEEIYAKFVSQKISKTRWRPVPSGSLQTTETFATGSWDNEENCV
                     SLWSIGDFGNLDSDGGFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLH
                     HPNNQTLSVNQQWPAAHYHTGPSSPSYSSAPCTGIVCDNPEIVTVGEDGRINLFRVDH
                     KEAVRTIDNADSSTLHAVTFLRTPEIVTVNSIGQLKIWDFRQQGSEPCQILSLTGDRV
                     PLHCVDRHPDQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPDH
                     LFTCSEDGSLWHWDASTDAPEKSSLFHQGGRSSTFLSHSLSNQAGVHQSLVSSWLSTD
                     PAKDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS"
     exon            179..301
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /inference="alignment:Splign:2.1.0"
     exon            302..379
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /inference="alignment:Splign:2.1.0"
     exon            380..560
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /inference="alignment:Splign:2.1.0"
     exon            561..696
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /inference="alignment:Splign:2.1.0"
     exon            697..848
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /inference="alignment:Splign:2.1.0"
     exon            849..971
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1290
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1261..1266
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /note="hexamer: AATAAA"
     polyA_site      1282
                     /gene="Nup43"
                     /gene_synonym="2610016K01Rik; 2610529I12Rik; p42"
                     /note="major polyA site"
ORIGIN      
        1 gggcgggcct gaggagcgcg cagtgtgctt tctgctgaac cttcttgctg gtttcagcat
       61 ggaggaaatt tatgctaagt tcgtgtctca gaaaattagc aaaacccgct ggcggccagt
      121 gccttccggg agcctgcaga ccacagagac ctttgccacg ggctcttggg acaatgagga
      181 aaattgcgtt tcactgtggt ctattggaga ttttggaaac ttggattctg acggagggtt
      241 tgaaggagac catcagttac tgtgcgatat tagacatcat ggggatgtca tggatttaca
      301 gttttttgac caggaaagaa ttgtagctgc ttcgtcaaca ggctgtgtaa cagtttttct
      361 tcaccatcca aataaccaga ccctgtccgt caatcagcag tggcctgcag ctcattacca
      421 tacaggtccc agcagtccct cctatagcag tgcaccatgt acaggaattg tgtgtgacaa
      481 cccagaaatt gttacagttg gagaggatgg ccgaataaat ctcttcagag ttgatcacaa
      541 ggaggctgtc agaactatag ataatgcaga cagcagtaca ctccatgccg taaccttcct
      601 tcgaactcct gagattgtta cagtaaattc aattggacag ttaaaaatat gggatttcag
      661 acaacaagga agtgaaccct gtcagatact atcactgact ggtgaccgag tgccactcca
      721 ctgtgttgac agacatccag accagcagca tgttgtagct accggtggcc aggatggaat
      781 gttgagtatt tgggatgtca gacaaggtac catgcctgtg tcattactga aggctcatga
      841 ggctgaaatg tgggaggttc acttccaccc gtccaaccca gatcacctgt tcacttgttc
      901 tgaagatgga tctctctggc attgggatgc ctccacagat gcacctgaaa agtcttctct
      961 ctttcaccaa ggaggaagaa gtagtacttt cctgtcacat agcttaagta accaggccgg
     1021 tgttcaccag tctctagtaa gttcctggct cagcacagac cctgccaaag accgaattga
     1081 aatcacaagc ttgcttccca gcaggactct gtctgtaaac agtttggatg ttttaggtcc
     1141 ctgtcttgtt tgtggaactg atgcagaagc catttatgtt accagacaac tattttcatg
     1201 aaagtgaaaa aacctagtta tcaaaatttt atcaccagaa agtggcattt gtaaggaaac
     1261 aataaactgt ttgttaatgt cagtgcccaa
//
