LOCUS       NM_153092               2909 bp    mRNA    linear   ROD 19-NOV-2024
DEFINITION  Mus musculus nucleoporin 42 (Nup42), transcript variant 1, mRNA.
ACCESSION   NM_153092
VERSION     NM_153092.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2909)
  AUTHORS   Hu,W., Li,S., Park,J.Y., Boppana,S., Ni,T., Li,M., Zhu,J., Tian,B.,
            Xie,Z. and Xiang,M.
  TITLE     Dynamic landscape of alternative polyadenylation during retinal
            development
  JOURNAL   Cell Mol Life Sci 74 (9), 1721-1739 (2017)
   PUBMED   27990575
REFERENCE   2  (bases 1 to 2909)
  AUTHORS   Hagstrom,S.A., Watson,R.F., Pauer,G.J. and Grossman,G.H.
  TITLE     Tulp1 is involved in specific photoreceptor protein transport
            pathways
  JOURNAL   Adv Exp Med Biol 723, 783-789 (2012)
   PUBMED   22183407
REFERENCE   3  (bases 1 to 2909)
  AUTHORS   Schebelle,L., Wolf,C., Stribl,C., Javaheri,T., Schnutgen,F.,
            Ettinger,A., Ivics,Z., Hansen,J., Ruiz,P., von Melchner,H.,
            Wurst,W. and Floss,T.
  TITLE     Efficient conditional and promoter-specific in vivo expression of
            cDNAs of choice by taking advantage of recombinase-mediated
            cassette exchange using FlEx gene traps
  JOURNAL   Nucleic Acids Res 38 (9), e106 (2010)
   PUBMED   20139417
REFERENCE   4  (bases 1 to 2909)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   5  (bases 1 to 2909)
  AUTHORS   Sasaki,M., Takeda,E., Takano,K., Yomogida,K., Katahira,J. and
            Yoneda,Y.
  TITLE     Molecular cloning and functional characterization of mouse Nxf
            family gene products
  JOURNAL   Genomics 85 (5), 641-653 (2005)
   PUBMED   15820316
REFERENCE   6  (bases 1 to 2909)
  AUTHORS   Suntharalingam,M. and Wente,S.R.
  TITLE     Peering through the pore: nuclear pore complex structure, assembly,
            and function
  JOURNAL   Dev Cell 4 (6), 775-789 (2003)
   PUBMED   12791264
  REMARK    Review article
REFERENCE   7  (bases 1 to 2909)
  AUTHORS   Strahm,Y., Fahrenkrog,B., Zenklusen,D., Rychner,E., Kantor,J.,
            Rosbach,M. and Stutz,F.
  TITLE     The RNA export factor Gle1p is located on the cytoplasmic fibrils
            of the NPC and physically interacts with the FG-nucleoporin Rip1p,
            the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p
  JOURNAL   EMBO J 18 (20), 5761-5777 (1999)
   PUBMED   10610322
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK078478.1 and AA867018.1.
            
            On Jul 21, 2009 this sequence version replaced NM_153092.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK078478.1, BC033270.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1236              AK078478.1         2-1237
            1237-1237           AA867018.1         331-331
            1238-2909           AK078478.1         1239-2910
FEATURES             Location/Qualifiers
     source          1..2909
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 10.72 cM"
     gene            1..2909
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /note="nucleoporin 42"
                     /db_xref="GeneID:231042"
                     /db_xref="MGI:MGI:2387631"
     exon            1..241
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /inference="alignment:Splign:2.1.0"
     exon            242..464
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /inference="alignment:Splign:2.1.0"
     exon            465..559
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /inference="alignment:Splign:2.1.0"
     exon            560..636
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /inference="alignment:Splign:2.1.0"
     exon            637..723
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /inference="alignment:Splign:2.1.0"
     exon            724..808
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /inference="alignment:Splign:2.1.0"
     exon            809..2909
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1714..1719
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /note="hexamer: AATAAA"
     polyA_site      1738
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /note="major polyA site"
     regulatory      1798..1803
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /note="hexamer: AATAAA"
     polyA_site      1820
                     /gene="Nup42"
                     /gene_synonym="CG1; NLP-1; Nlp1; Nupl2"
                     /note="major polyA site"
ORIGIN      
        1 ggtcacagag cctctgggcg cggggcgatg acgtcacact agccgggcct cggttgctgg
       61 agcctgggcc ctcgccggcg accgcgagca gggtcgagct gggacggcgc taccatgacc
      121 atatgccagt ttttccttca aggccggtgc cgcttcggag accgctgctg gaacgagcat
      181 cccggcgccc ggggtgcggg cggggctcgg cagccgccac cgcagcagca gccaccctca
      241 gggaataacc gtcgagggtg gaatgccagc agccagaggt actccaacgt catccagcct
      301 tccagcttcc ccaagtccac accatggggt ggcagcagag atcaggacaa accaccattc
      361 ggctcttttg attctggggc ttctaccagc agaggctttg ggtcatctca aaaccctttt
      421 gcttcacctc tctctgatga gcagaaagat gaaaagaaac ttctggaagg aattgttaag
      481 gacgtagaag tttgggagtc gtcgggacag tggatgtttt ctgtttactc gccagtgaga
      541 aagaaaccca atatttcagg tttcacagac atttcaccag aggagttgag gcttgaatac
      601 cataacttct taaccagcaa taacttacag agctatctaa actctgttca acagcttgta
      661 agtcagtgga ggaataggat aaatgaactg aaaaatctaa ctatgtcgac caaaggagct
      721 ctgctctctg acgtaaaaga tggggtcagt caagcagtgc ctgcgtttgg atttggaagt
      781 aagcaagcag ggtcgtttgg gtcaccaggc ttcccagtga ataacagcag cagcagtact
      841 gttcagaact ttagttttaa aacaagccct ggacttgcca ctcctccttc cggaagcact
      901 tcagtatttg gaagtcaccc agcctttggg gctgggccct ctgcgggctc ctccatctct
      961 tcctccactc cagcctttgg acttgggaaa cctgaagcca cgtctgctgc atcattttcg
     1021 ttcaagagcc ctgaaggttc cagttttgca tcacctgggt tttcgggatt tccagcctcc
     1081 atggcagcga gtccctctgg ctctacaaca gcccctccct tgagaagcgg cagttctgtg
     1141 gctggttttg gcagtcctag cccacattct caggctgtat ttgctaaacc ttccactgac
     1201 gtgtttggag gtagcggcat atctacctct gtcctagcct ccggtgccgc tgataacgca
     1261 ctgttcacac ccagggatca gctgatgaag gaagaactgg agcagtttca atcccagaga
     1321 tttaccctgg gaaaaattcc actgaagccg ccaccggtcg agcttctgac tgtataaagg
     1381 tcaggtttaa atacagaaag aatgccttag ccaggcatgt cctgcatgcc tacagtctgg
     1441 gaagctgagc agcagaacac cacaaattca ggccagtgtg gacagcacag agtgaacaag
     1501 agacctccaa gagaaagctc tgaatggctt tgaaagccct gtttttatag tgctgcagat
     1561 caggctgggc tcacccaggc caggcggatt ctacctgacc catactcctc cctaactatg
     1621 gcttctgaga ttgacttgaa tacgtttata tatatatata gctttcagta atttgaggga
     1681 ttttaaagtt taacttttct aaacacccag ctaaataaag gatagccaaa aaagtcaata
     1741 agcaagggac tcttttgtac tgtaattacg agtggaacta aacagtacag tgtactgaat
     1801 aaagtaattt tctcattcta ctccactttc tgtcccttta aatagggatg tgaacagtgg
     1861 tttctggaga tcaaacccag gtacagtgtc tcctgcatga caggaactcc gtctcccaac
     1921 tctgacttgt gcctgcatgt gtgtctgtgc accacgtaca tgcctggttc ctttagaggt
     1981 cagattccct gcagctgagg ttacagttgt gaggcaccat ataaaggtgc taggaactga
     2041 actctcgtcc tctgaagcag cagtcctcct aacctctgaa ctatctacct ctccagtccc
     2101 aagccctcac cttttacatg ggagaaaatc aaacgtggaa ggagccgctg agtgggtgga
     2161 gcagtggctg cagagatatg cagatgtgag gacccaagct gatgcccagc acttaggcat
     2221 gggagtgcgt gaatctgtct ccccagcact caagaggcag agacaggtag atgcccagaa
     2281 cttgctgacc agccatttcc agaaaccctg tcaaaaggat ggagaaatga taggggaaga
     2341 cacctaacac caacctttgg ccatcacaca cacctgcgca caaacacaca tgcgtatagt
     2401 agaccaaaaa actcaagcaa atggcttacc tattgaagga tgggcactcc aggtgttcat
     2461 gaacagtgcg gagcattctt tccctcggga tccatattct gaccctttta aagtgtgatt
     2521 cccatctaac atcagaggcg ttgctcttct atggagtcca gcaaatgcag atcaactaca
     2581 caatgacagg cggaccaata catgcgtgtc attaacaaag aatcttccat cacgtgtcct
     2641 ttcacgtgct tgctttagca gagcatcctc tctcctgtgt ctgcttcagc gaaacatgcc
     2701 gtcacgagtc tgccttagcc tttcacacct gtgtccactt taacaaaaac gttccttcat
     2761 gtttgcccca gcaaaacatc atccaaacaa ttttccaaag aacccttaaa tttccacttc
     2821 attatttaat ctggagtcca ccctgagaag tgggtatggt acggtatgca tccactttcc
     2881 acaatgaaca tccaataaac aatatagat
//
