LOCUS       XM_036162644            4784 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus NOL1/NOP2/Sun domain family member 6
            (Nsun6), transcript variant X5, mRNA.
ACCESSION   XM_036162644
VERSION     XM_036162644.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4784
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..4784
                     /gene="Nsun6"
                     /gene_synonym="4933403D21Rik; 4933414E04Rik; NOPD1"
                     /note="NOL1/NOP2/Sun domain family member 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 86 long SRA reads, 2 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 18 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:74455"
                     /db_xref="MGI:MGI:1921705"
     CDS             429..1436
                     /gene="Nsun6"
                     /gene_synonym="4933403D21Rik; 4933414E04Rik; NOPD1"
                     /codon_start=1
                     /product="tRNA (cytosine(72)-C(5))-methyltransferase NSUN6
                     isoform X2"
                     /protein_id="XP_036018537.1"
                     /db_xref="GeneID:74455"
                     /db_xref="MGI:MGI:1921705"
                     /translation="MKAGDVISVYSDINGKCKKGAKEFDGTKVFLGNGISELSRKDIF
                     NGLPDLKGIGIRMTEPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCA
                     APGGKTTHTAALMQDKGEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLD
                     TTDGIEGGPPFLPESFDRIILDAPCSGMGQRPNMACTWTLKEVTSYQPLQRKLLHVAV
                     QLLKPGGVLVYSTCTITLAENEEQVAWALRTFPCLQLQPQEPQIGGEGMVGAGLTLEQ
                     LKQLQRFDPSVVPLQNMDTDSLGEARREDMIWLANKDCIGFFIAKFLKCQSTKAKVSQ
                     K"
ORIGIN      
        1 agtgtcgcag ttcggagctg tctcacagca tcccagagaa cgacaaacct tgggccctgc
       61 tcattccaga actcagcact gaaaggcatt cttgtgctcg tccattggct ggcaacgctg
      121 aaattcggaa ataaagactg cttcccaaca ttttcttgga caacttaaaa cagaaaaaaa
      181 tcaaaagaat gctgtgtctg cttcaagcag acaagaagca gaaaggaaat ttgagactct
      241 gctgcttcgc ctgtcacacc ctccgtcgat gacaactgtc agagtgaata cgcatttagg
      301 ctcagttcag catgtcagag gtctgctgct tgaagagctc cagaagcagt ttggtgaatc
      361 cagcattcct gttgttcagc atccagccct cccggatgtc ttgctcatcc ccatgactgg
      421 accaagttat gaaagctgga gatgttattt ccgtgtattc tgatattaac ggcaaatgta
      481 agaaaggagc caaagaattt gatggaacta aagtatttct cggaaacgga atttctgaac
      541 tgagccgcaa agatatcttc aatgggttac ctgatctgaa aggtataggc ataagaatga
      601 cagaacccat atatctcagt ccctcgtttg acaatgttct acccagttat atatttttac
      661 agaatttacc atctacagtt gtagctcatg ttcttgatcc tcaacctgga gagaagattc
      721 tagatatgtg tgcagcccct gggggcaaaa ctacacatac tgcagcactg atgcaggaca
      781 agggagaagt aatagcattg gacaaaatat tgacaaaagt gaacaaactg aagcagaatg
      841 cttcattatt agggcttcat tctatccggg cattttgctt cgatgcaaca aaggcactta
      901 agcttgatac taccgatggc atagaagggg ggcctccatt cttaccagaa tcttttgacc
      961 gaattatcct tgatgcaccc tgcagtggaa tgggacagag gccaaatatg gcttgtactt
     1021 ggactttaaa ggaagtgaca tcctatcagc cactacagcg aaaactcctt catgtggcag
     1081 ttcaactcct gaagccaggg ggagtgctgg tctacagcac atgcacaata accttggcag
     1141 aaaatgaaga gcaagttgcc tgggccctcc gaacattccc ctgccttcag cttcaacccc
     1201 aggaaccaca gattggagga gaagggatgg tgggagctgg cctgacattg gagcaattga
     1261 agcagctgca gcgatttgat ccgtctgttg taccactgca gaacatggac actgattctc
     1321 ttggagaggc cagaagggaa gacatgattt ggttggccaa caaagactgt ataggcttct
     1381 ttattgcaaa gtttctaaaa tgtcaaagca caaaagcgaa ggtttctcag aaatgaaaat
     1441 tctgaagact gtctgtgtgt ggggcttttt cttacacaga agtgttgtca agccaacgga
     1501 gtgatggcat ggttgctcag gaaacaggat gatgctaatg gcttccctgg gatcggaagg
     1561 agcagcatgc atacgtggtt ctggggaagt gggggatagg aaagcataat cagcctcatg
     1621 ctttatgaaa ggaaaggagt tgcctgtggg ggtctggaat ataatttcag ttttaactca
     1681 taactattag tctttctaat gtcataaata ttgtctttct atcaaaaaaa atagtttgaa
     1741 aacaagaaca aagctctaaa gctttcaagt ggttatgaaa aactgttttc agtttccaag
     1801 atggtggtag cttcttcagt aagttttcag gacatggaca gtaacactaa cctcatcata
     1861 actgaggtaa gtaggctcgt tgctggagtc tgcctctgtc tctctctgct tactgattgt
     1921 aaatctggct tcttaattta aaggtttatt tctgtactga gtatgtgtgt ggaacacatg
     1981 gtgaagtcag aggaccacgt ttgagaatca gtttctcgcc tctaccttgg gttctgaagc
     2041 ttgatctcag atcctcaggt ttgtgttgca agtccttttt ccctgctgag tcatttcacc
     2101 aggccgcagg tcacttctaa ataaagcttg gatttgcgct aaatactttg aaaggtgaag
     2161 tctagtgatt tacgttgtag ttaaaatggc cattgagaag tactccacat tttggctgta
     2221 ttttatcatc tttgggaaca gacatcatgc aaaataatag ggaaatgctt ggtgaggagg
     2281 agaaaagcag ttactgagag ccaggactcc catccccagg agctgttcca gaggttatta
     2341 tgttagagtt ctagatttaa agggttgcct ttttactata aaattacaac cagaagacac
     2401 acaaagactt gcttccatca ttccttctgt caattttcaa aggccatttc aaaggtatca
     2461 atggaaggtt ctcccccaag gtatgaagaa cggtcctact ctgtcagaaa tttgtggatc
     2521 aagcttcatg attcattagg gtcaagtata aaaaggcttt tattttacat tatatgattg
     2581 atattcttat agcagaaaaa ataaaggatt taactgaatt aattttgaaa aatatcattg
     2641 aggtattaac ccagcatgga ctaattatca cccctgataa aattcaacat aacaggccaa
     2701 taaattattt gggaaaaaca attcataatg aatatatcat atctcaataa tcgcaattta
     2761 ggtttgataa attaaaaaca atgattttca aaaattattg agaaatatta attggattaa
     2821 ttttccaatt aatttaaaaa ttaccacagg acagttgcat catttatttg acattcttaa
     2881 aggagatcct gatcccacgt ctagagacag cttacagaag aagccttaaa acaactagaa
     2941 ttgatagaac aaaagatgca agatgcaaag gtaaaacaaa tacattagtt aaaaccatgg
     3001 tctcttctta tacttaaaac agcttacagg cctactgcat ggctatggca agaaggtgtg
     3061 ctagaatgga tttatttccc tcatactcta gtaaaaatgg tatcctctta tccttttatg
     3121 tgtagtcaat taataattaa agggaggata agatccaggg aattatttgg caaagaaatg
     3181 catggaattg ttattcccta caatcaggag caagtggagt atttacttcc aactgcggct
     3241 gactggggaa tggcattagc tcaggatatg ggataaacta aataccatgt acctcaacac
     3301 cctatggtaa agttttagaa gaaacaaata ccttttcctt ctaaaataac attggaaccc
     3361 gtttctgatg ccctcttggt atttacagat gggtcatcta atggaacctc ggctgtttat
     3421 ataaaagata gacctggaat tattaaaaag gcaaaataaa cttctgcaca gcaggcggaa
     3481 attattgcag ttattactgc ccttgaacac ctgcctgaag agtttaacct ttatacagat
     3541 tcaaaatatg tagttcattt atttcctgat atagagacag ctcttatatc tgggagttcc
     3601 agaattatat aattcaatca agaaaaagaa aattttttat aggacatatc agaagacata
     3661 ctggcctgcc aggtccattg gcttcaggaa atgctatggc agatttatta acgaaggaac
     3721 acgtaattgc tagtgtggtt gaacaagcat tggaaagtca tgctttacat catcagaacg
     3781 cattggcctt gagaaggatg ttcaatttga cacgagaaca ggctagacaa attgtgaagg
     3841 attgcaaaca ttgtcccgat gtatatcatt cattaaaaat gggagttaac tcaaggggcc
     3901 ttaaacctca agttttgtgg caaatggatg taactcatat cccagaattt ggaaaattgt
     3961 cctatgtaca cgttattgta gatacctatt ctcatgtggt tatggctact gctagaactg
     4021 aagaggctgt gaaagatgtc atacaacatc ttattatatg cttctcctcc tcaggtgtgc
     4081 caaaaagaat taaaactgat aatgctctag cttacatttc tcaaggtttt gcacagtttt
     4141 gcattcaatg gggtatagaa catataacag aaattccata taacccccaa ggtcatgcta
     4201 tcatagaaag gattcatcaa aatctttttt ttttaaagat ttatttattg ttatatgtaa
     4261 gtacactgta gctgtcttca cacataccag aagagggcat cagatctcat tatggatggt
     4321 tgtgagccac catgtggttg ctgggatttg aactcagtat cttcggaaga gcagtcagtg
     4381 ttcttaaccg ctgagccatc tctccagccc cctcatcaaa atcttaaggt acaatttcag
     4441 agattaaaat ctagtgatca ttattactca cctcatcaat ttttaagcca tggtttattt
     4501 accattaatc accttactac agatgataaa ggcttaaccc ctatgcaaaa acattgggct
     4561 cccctactgc agactcgttt agtgatgtgg aaggatcttt taacaggcac ctgggaaggg
     4621 ccagatgtgt taatcacctg gggaagagga tatgcatgtg tttttccaca gaatgcagag
     4681 acccaatctg catcccagac agacttattc gacccttcca accagaaaac ctctacaaga
     4741 acccagaagc aaaagaaggc aaaagaagta atgaagacat tgaa
//
