LOCUS       NM_001025586            1202 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus nuclear receptor 2C2-associated protein (Nr2c2ap),
            transcript variant 1, mRNA.
ACCESSION   NM_001025586
VERSION     NM_001025586.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY100716.1, AK160346.1 and AA111465.1.
            
            On Nov 3, 2013 this sequence version replaced NM_001025586.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest protein (isoform 1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK160346.1, BG864055.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-20                BY100716.1         1-20
            21-1181             AK160346.1         2-1162
            1182-1202           AA111465.1         118-138
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 34.15 cM"
     gene            1..1202
                     /gene="Nr2c2ap"
                     /gene_synonym="2310073E15Rik"
                     /note="nuclear receptor 2C2-associated protein"
                     /db_xref="GeneID:75692"
                     /db_xref="MGI:MGI:1922942"
     exon            1..273
                     /gene="Nr2c2ap"
                     /gene_synonym="2310073E15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             236..658
                     /gene="Nr2c2ap"
                     /gene_synonym="2310073E15Rik"
                     /note="isoform 1 is encoded by transcript variant 1; TR4
                     orphan receptor-associated 16 kDa protein"
                     /codon_start=1
                     /product="nuclear receptor 2C2-associated protein isoform
                     1"
                     /protein_id="NP_001020757.1"
                     /db_xref="CCDS:CCDS40366.1"
                     /db_xref="GeneID:75692"
                     /db_xref="MGI:MGI:1922942"
                     /translation="MTQSLVCPDTVSRVSSVLNRNSRQFGKKHLFDQDEETCWNSDQG
                     PSQWVSLEFPQCVQITQLQVQFQGGFSSRHSCLEGSRGGEALSKIVDFYPEDTNALQT
                     FSIPTMEVDRLKLTFEDTTDFFGRVVIYHLRVLGEKAG"
     exon            274..364
                     /gene="Nr2c2ap"
                     /gene_synonym="2310073E15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            365..470
                     /gene="Nr2c2ap"
                     /gene_synonym="2310073E15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            471..538
                     /gene="Nr2c2ap"
                     /gene_synonym="2310073E15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            539..1194
                     /gene="Nr2c2ap"
                     /gene_synonym="2310073E15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1171..1176
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Nr2c2ap"
                     /gene_synonym="2310073E15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1194
                     /gene="Nr2c2ap"
                     /gene_synonym="2310073E15Rik"
                     /note="major polyA site"
ORIGIN      
        1 gtgtctgtgt agcactgcgc gtgcgctatc cgcacgcggt tccgggttcg tagatctgca
       61 gagccgctgg ggctcggttg gtttagaaag ctgcttttag tgttcctccg gttcccagat
      121 cgcccacctt gtcatataga ggtggccggg ggtagggagt gtggccgcta gatcaagttg
      181 ggagtggcag cgccgggctt cgaactcgcg ttccgcgagt catcctagaa ctgtgatgac
      241 tcagtctttg gtttgtccgg acactgtgag cagggtcagt tctgtgctca atcgcaacag
      301 ccggcaattt ggaaagaaac atctttttga ccaggatgaa gagacgtgct ggaactctga
      361 ccagggcccc tcccagtggg tgtcactcga gtttccccag tgtgttcaga tcacacagct
      421 gcaggtgcag ttccagggtg gcttctccag tcgccacagc tgcctggaag gttcacgggg
      481 tggggaggca ctcagcaaga ttgtagattt ctaccctgag gacaccaatg cccttcagac
      541 cttctccatc cccacaatgg aggtggaccg actgaagttg acttttgagg acaccaccga
      601 cttttttggc cgtgtagtca tctaccacct gcgggtgctg ggtgagaagg cagggtgaga
      661 agcggctatt cttccaggaa gcccccctgg gaggcaccct gaagaccttc aagttctgca
      721 cagatttatt ggttcctgtt gcggagggct cttcccacca ctgtccagga gctgcctttc
      781 aagccagttg tgggctgact gtccctgagt gcctgggttc ccagcaggct gtcttcactc
      841 ggggtccaca ggccccaggg tgctctggaa caatctgagg atgtggctct ccatcacctg
      901 ttgcactgtg ggaggaggtg ggaggagggg tgagctgggg gagccgggaa gaagggactg
      961 aagaagatgc tcagcctctg atgtaaacag gaggccgtga gcaggaaact gtccagccaa
     1021 gtgcttttct gcttttctgt tcttgctggg ctgggctcac taccttgaga ataggttgct
     1081 ttaaggcaag gtttgcctgt ctcccttcac tcctgtatcc cacccaccct ccgaattgta
     1141 gctctctctg cctccagaac catgagtcca aataaaatgt taaaaaaaac caaaaaaaaa
     1201 aa
//
