LOCUS       XM_017322126            3655 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus nuclear receptor subfamily 1, group H,
            member 2 (Nr1h2), transcript variant X3, mRNA.
ACCESSION   XM_017322126
VERSION     XM_017322126.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017322126.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3655
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..3655
                     /gene="Nr1h2"
                     /gene_synonym="LXR; LXRB; LXRbeta; LXRBSV; NER1; OR-1;
                     RIP15; Unr; Unr2; UR"
                     /note="nuclear receptor subfamily 1, group H, member 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 mRNAs, 28 ESTs, 588 long SRA reads, 1
                     Protein, and 78% coverage of the annotated genomic feature
                     by RNAseq alignments, including 45 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:22260"
                     /db_xref="MGI:MGI:1352463"
     CDS             2159..3286
                     /gene="Nr1h2"
                     /gene_synonym="LXR; LXRB; LXRbeta; LXRBSV; NER1; OR-1;
                     RIP15; Unr; Unr2; UR"
                     /codon_start=1
                     /product="oxysterols receptor LXR-beta isoform X2"
                     /protein_id="XP_017177615.1"
                     /db_xref="GeneID:22260"
                     /db_xref="MGI:MGI:1352463"
                     /translation="MLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVHGGAGRYA
                     CRGSGTCQMDAFMRRKCQLCRLRKCKEAGMREQCVLSEEQIRKKRIQKQQQQQPPPPS
                     EPAASSSGRPAASPGTSEASSQGSGEGEGIQLTAAQELMIQQLVAAQLQCNKRSFSDQ
                     PKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALL
                     KASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRR
                     LGLDDAEYALLIAINIFSADRPNVQEPSRVEALQQPYVEALLSYTRIKRPQDQLRFPR
                     MLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE"
ORIGIN      
        1 gaggcagagg ccttggccaa ctctcttagg agatgaaggc cagcctggtc tacagaagca
       61 gttctaggac agccatggct acacaaagaa accctgcctt gcaaaacaaa caaatcaaca
      121 agaacaacag tggccgggcg gtggtggcgc acgcctttaa tcccagcact tgggaggcag
      181 aggcaggcgg atttctgagt ccgaggccag cctggtctac aaagtgagtt ccaggacagc
      241 caggactata cagagaaacg ctgtctcgaa aaaaccaaac ctaaacaaaa caaaaccaaa
      301 acaacaacaa caaaaaacaa aacaaaacaa aaccaagaac aacagcaaca aaagttaagt
      361 aaaagcaaga atttgtgctt aataaagatt cccaactgtc cataagtggg gagtgcggag
      421 aaacaatctc tgaatgtttt ccatctgaga ttcacacaag tatttcaatc ttttgtgaaa
      481 aagctggtat tattactttt atgggagagg ggttgaggct acttgtttat tcacatttag
      541 ctgatggcca ggtctcactt cctagctcaa tttggcttcc aactaaaagc aatcctcttg
      601 ccttgcctgg gtctgtttgc ttattgcagg catgggtctg cacccaattt gcctttttta
      661 tatttacttc ttcctattat gaagctgaat gcaaaaataa attcttgtat aaaaaagttc
      721 ctgggctgga gagatggctc agcagttaag agcaccaatt gcttttctga aggtcctgag
      781 ttcaaatccc agcaaccaca ttgtggctca caaccatccg taatgagatc tgatgccctc
      841 ttctggtgtg tctaaagaca gctacagtgt actcacatat acataaataa ataaatctta
      901 aaaaaaaaaa aaaaagttcc cgaggcgggg acatcaagag agtccaaagt gaacaagatc
      961 cagaatcagg acatgtgagg aggaggagaa ggagaaggag agagaggcga gccaggagag
     1021 taaaggaccc agtaaccaaa tcggctggat tataaaggga agggcagccc aagccctgag
     1081 ctggagaagt ttaaggtatg aaaagccttt aagcttttta ggcttaaaac catcctgtaa
     1141 ccatcttgcc atctccaaat ttaaaatatt tagaaccaac atacagggct ggaagaggag
     1201 ctgctaccgc aataatgggg aggtaaaggc aacaggctca gaagtttaag gccacccttg
     1261 aaataagaga tcctgtctca aaatcaagac aaaaattttt ttaaaaagca gccatgcagc
     1321 accgctacaa aagtagagaa ctttaaacta ctcaaaaagg ttaaaacctg cttcgttagc
     1381 cacctgcgaa aagaaacgaa agaactttcc ggaacttttt tctgagtccc agaggggaac
     1441 taccagaaga aataaacttc cggtgtgcca cttccggccg aggcctcaca gtcggtggcg
     1501 ccctggcaga ccggaagtct gtcacctttc ccggtccgcc tacttccgga agtgacgcgc
     1561 agcggggttg ccggaagaag tggcgaagtt acttttgctt ttcgctcagc aagcgctgtt
     1621 gcttcgagct actcccaggc ttctgaagtt acttccaaag tgctgtggag gcacaatcac
     1681 cggtgcggac acagagctct cgcctcccac ggccgtttcc agggcaacag agtcggagac
     1741 cccctgcgac ccccctcccg atcgccggtg cagtcatgag ccccgcctcc ccctggtgca
     1801 cggagagggg cggggcctgg aacaagcagg ctgcttcgtg acccactatg tcttccccca
     1861 caagttctct ggacactccc gtgcctggga atggttctcc tcagcccagt acctccgcca
     1921 cgtcacccac tattaaggaa gaggggcagg agactgatcc tcctccaggc tctgaagggt
     1981 ccagctctgc ctacatcgtg gccccgtcct ctcaccctcg cttcgggacc tcccatggcc
     2041 cgttccccgg ctgctgtttc tctttgtcgc tatctctcat ggcatctgct caccccaagt
     2101 catcttagag ccagaggatg agcctgagcg caagcggaag aaggggccgg ccccgaagat
     2161 gctgggccat gagctgtgcc gcgtgtgcgg agacaaggct tcgggcttcc actacaacgt
     2221 gctcagctgt gaaggctgca aaggcttctt ccggcgcagt gtggtccacg gtggggccgg
     2281 gcgctatgcc tgtcggggca gcggaacctg ccagatggat gccttcatgc ggcgcaagtg
     2341 ccagctctgc cggctgcgca agtgcaagga ggctggcatg cgggagcagt gcgtgctctc
     2401 tgaggagcag attcggaaga aaaggattca gaagcagcaa cagcagcagc caccaccccc
     2461 atctgagcca gcagccagca gctcaggccg gccagcggcc tcccctggca cttcggaagc
     2521 aagcagccag ggctccgggg aaggagaggg catccagctg accgcggctc aggagctgat
     2581 gatccagcag ttagttgccg cgcagctgca gtgcaacaaa cgatctttct ccgaccagcc
     2641 caaagtcacg ccctggcccc tgggtgcaga ccctcagtcc cgagatgccc gtcagcaacg
     2701 ctttgcccac ttcaccgagc tagccatcat ctcggtccag gagattgtgg actttgccaa
     2761 gcaggtgcca gggttcttgc agttgggccg ggaggaccag atcgccctcc tgaaggcgtc
     2821 caccattgag atcatgttgc tagaaacagc cagacgctac aaccacgaga cagaatgcat
     2881 cacgttcctg aaggacttca cctacagcaa ggacgacttc caccgtgcag gcttgcaggt
     2941 ggaattcatc aatcccatct tcgagttctc gcgggccatg cggcggctgg gcctggacga
     3001 tgcagagtat gccttgctta tcgccatcaa catcttctca gccgatcggc ctaatgtgca
     3061 ggagcccagc cgtgtggagg ccctgcagca gccctacgtg gaggcgctcc tctcctacac
     3121 gaggatcaag cgcccacagg accagctccg cttcccacgc atgctcatga agctggtgag
     3181 cctgcgcacc ctcagctccg tgcactcgga gcaggtcttt gcattgcgac tccaggacaa
     3241 gaagctgccg cccttgctgt ccgagatctg ggatgtgcac gagtaggggc agccacaagt
     3301 gccccagcct tggtggtgtc ttcttgaaga tggactcttc acctctcctc ctggggtggg
     3361 aggacattgt cacggcccag tccctcgggc tcagcctcaa actcagcggc agttggcact
     3421 agaaggcccc accccaccca ttgagtcttc caagagtggt gagggtcaca ggtcctagcc
     3481 tctgaccgtt cccagctgcc ctcccaccca cgcttacacc tcagcctacc acaccatgca
     3541 ccttgagtgg agagaggtta gggcaggtgg ccccccacag ttgggagacc acaggccctc
     3601 tcttctgccc cttttattta ataaaaaaac aaaaataaag tttgagtaca agcca
//
