LOCUS       XM_036154741            1279 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuroplastin (Nptn), transcript variant X9,
            mRNA.
ACCESSION   XM_036154741
VERSION     XM_036154741.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1279
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..1279
                     /gene="Nptn"
                     /gene_synonym="Sdfr1; SDR-1"
                     /note="neuroplastin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 23 ESTs, 209 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 18 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:20320"
                     /db_xref="MGI:MGI:108077"
     CDS             216..1220
                     /gene="Nptn"
                     /gene_synonym="Sdfr1; SDR-1"
                     /codon_start=1
                     /product="neuroplastin isoform X4"
                     /protein_id="XP_036010634.1"
                     /db_xref="GeneID:20320"
                     /db_xref="MGI:MGI:108077"
                     /translation="MSGSSLPGALALSLLLVSGSLLPGPGAAQNAGFVKSPMSETKLT
                     GDAFELYCDVVGSPTPEIQWWYAEVNRAESFRQLWDGARKRRVTVNTAYGSNGVSVLR
                     ITRLTLEDSGTYECRASNDPKRNDLRQNPSITWIRAQATISVLQKPRIVTSEEVIIRE
                     SLLPVTLQCNLTSSSHTLMYSYWTRNGVELTATRKNASNMEYRINKPRAEDSGEYHCV
                     YHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWIWRKKENG
                     VFEEISNSSGRFFITNKENYTELSIVNLQITEDPGEYECNATNSIGSASVSTVLRLGQ
                     "
ORIGIN      
        1 cggtgctcct ggcccgccca cggccgccag cggaggtctc gcgaggcttg gacgctgcgg
       61 cggtaggagg aggacaggga aggacggagc tcggccgcgg ctgcctccct cgttcactcc
      121 ctcgcgcgcg cgctcgcccg ccccctccct ccctcccctc cctttccccg gccccggccc
      181 cggcccattc gctgcgcgct ctccggctag ggaggatgtc gggctcgtcg ctccccggcg
      241 ccctggccct ctcgctcttg ctggtctctg gctcgctcct tccagggcca ggcgctgctc
      301 agaacgctgg gtttgtcaag tcgcccatgt cagaaactaa gctcacgggg gacgcctttg
      361 agctgtactg tgacgtggtc gggagtccca cgccagagat ccagtggtgg tacgcagaag
      421 tcaaccgggc agagtctttc agacagctgt gggacggtgc tcggaagcgc cgtgtcaccg
      481 taaacaccgc ctacgggtca aacggcgtga gtgtgctgag aataacccgg ctcaccttgg
      541 aggactctgg gacttacgag tgcagggcca gcaacgaccc caagaggaat gacttgaggc
      601 aaaacccttc cataacatgg attcgagccc aggccaccat aagcgtcctt cagaaaccaa
      661 gaattgtcac cagtgaagag gtcattattc gagaaagcct ccttcctgtc accctgcagt
      721 gtaacctcac ttccagctct cacaccctta tgtacagcta ctggacaagg aatggggtag
      781 aactcactgc cacccgtaag aatgccagca acatggagta caggatcaat aagccaagag
      841 ctgaggattc aggcgaatac cactgtgtat atcattttgt cagcgctcct aaagcaaatg
      901 ccaccattga agtgaaagct gctcctgaca tcactggcca taaacgaagt gaaaacaaaa
      961 atgaagggca ggatgctatg atgtactgca agtcagttgg ctacccccac ccagagtgga
     1021 tatggcgcaa gaaggagaat ggtgtgtttg aggagatttc taatagctct ggtcgcttct
     1081 tcatcaccaa caaggagaat tacactgaat tgagtattgt gaatctccaa atcacagaag
     1141 atcctggaga gtatgaatgt aatgccacca actccattgg ctctgcctcc gtttccaccg
     1201 tcctcaggct gggccaatga aaaccaactc taccaacaat cacaaagata aaaacttgcg
     1261 ccagagaaac acaaattaa
//
