LOCUS       XM_036157459            6183 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuronal PAS domain protein 3 (Npas3),
            transcript variant X38, mRNA.
ACCESSION   XM_036157459
VERSION     XM_036157459.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6183
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..6183
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 1652 long SRA reads, 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
     CDS             625..3084
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X36"
                     /protein_id="XP_036013352.1"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
                     /translation="MRDFANQGDPPWNLRMEGPPPNTSVKVIGAQRRRSPSALAIEVF
                     EAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHV
                     EMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLLTTDNTLERS
                     FFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP
                     PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGI
                     RHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNP
                     EYKDTPMDIAQLPHLPEKASESSETSDSESDSKDTSGITAEDNENSKSDEKGNQSENS
                     EDPEPDRKKSGSACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFEHPKAAEDGFGALG
                     PMQIKVERYVESEADLRLQPCESLTSDSAKDSDSANEAGAQASSKHQKRKRRRKRQKG
                     GSASRRRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPINFDNDSSIWNYP
                     PNREISRNESPYSMTKPPTSEHFPSPQGQGGSSGGGGALHVAIPDSVLTPPGADGTAG
                     RKTQFSGTAPVPSDPLSPPLSASPRDKHPGGGAGSGGGGPGASNSLLYTGDLEALQRL
                     QAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFV
                     DVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPGGNVFTTAEGLFST
                     LPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 tccgccgcgc acagtggccg cggctcacta atgggattgc aggctggtgc ctggctccgc
       61 tgctgccgcc gctcgcgccg ctgctgccgc cgccgcccga acccgagccc gagcccccgc
      121 cagcccgagc ccagagcagc cgcgcctggg gctccaagcc gcggcgatga tccgaatctt
      181 tccggatttc agcgtgcagg tgacggccgc ggcggccggc ggggcagccg ctggggtacc
      241 ggccggtgcg ggcatgggga gggccggcgc cgcggccaac ggcaccccgc agaacgtcca
      301 gggcatcacc tcctaccagc agcgatgatg aaatccagtg tcacatccat gccagaaatt
      361 taacagagaa taactgccca gcatcctctg cccaaccaat cagaatgtag gaaaatctac
      421 agatatgacg gaatctactg tgaatctacc taccagaatt tacaagcact gagaaaggag
      481 aaatccagag atgctgctcg atcccgccgg ggaaaagaaa attttgagtt ctatgaattg
      541 gccaagctgt tgcctcttcc tgccgccatc accagccagc tcgacaaggc atccatcatc
      601 cgacttacaa ttagttatct caagatgaga gactttgcca accaagggga tcctccatgg
      661 aacctgagga tggaaggccc tccaccaaac acctcagtaa aagttatagg tgcacaacga
      721 aggcggagcc ccagcgcact ggccattgaa gtatttgaag cacatttggg aagccacatt
      781 ttgcagtccc tggatggctt cgtatttgca ctaaatcaag aaggaaaatt tttgtacatt
      841 tctgaaaccg tctctatcta cctaggcctc tcacaagtgg agctgacagg tagcagcgtc
      901 tttgactatg tccaccctgg ggaccacgtg gagatggcag agcagctggg catgaagctc
      961 ccgcctgggc ggggtctcct ctcgcagggc accacagagg acgcggccag ttcagcatct
     1021 tcctcttctc agtcagagac ccctgagcca gtggagacga ccagccctag tctgctaacc
     1081 acggacaaca cccttgaacg gtcctttttc atccgaatga agtctactct gaccaaacgt
     1141 ggagtccaca tcaagtcatc tgggtataag gtgattcaca taacaggccg gcttcgcctc
     1201 agagtgtcgc tgtcccacgg gaggaccgtc cccagccaaa tcatgggtct ggtggttgtg
     1261 gctcacgcct tgcctccccc tacgatcaat gaagtcagaa ttgactgcca tatgttcgtc
     1321 actcgagtaa acatggatct caatatcatt tactgtgaaa ataggattag tgattacatg
     1381 gatctgaccc ctgtagacat cgtagggaaa agatgctacc acttcatcca tgccgaagat
     1441 gtagaaggca tcaggcacag tcacctggac ttgctgaata agggtcagtg tgtgaccaag
     1501 tactaccgct ggatgcagaa gaatggaggc tacatctgga tacagtctag tgccaccata
     1561 gctattaatg cgaagaatgc aaatgagaag aacatcatct gggtgaatta tcttcttagt
     1621 aatccggagt acaaggacac acccatggac attgcgcaac tcccgcattt gccagagaaa
     1681 gcgtcagaat cctcagagac atccgactct gagtcagact ctaaagacac ctcaggtatt
     1741 acagcagagg acaatgagaa ctccaagtcc gacgagaagg gcaatcagtc cgagaatagc
     1801 gaagatccgg agcctgaccg caagaagtca ggcagcgcat gcgacaacga catgaactgc
     1861 aacgacgatg gccacagctc cagcaacccg gacagccgtg acagcgacga cagcttcgag
     1921 cactcggact ttgaacaccc caaggcggcc gaggatggct tcggcgcgct gggccctatg
     1981 cagatcaaag tggagcgcta cgtggagagc gaggcggacc tgcgactgca gccctgcgag
     2041 tcgctcacgt cggacagcgc caaggactca gacagcgcga acgaggcggg cgctcaggca
     2101 tccagcaagc accagaagcg caagcggcgg cggaaacggc agaagggcgg cagcgccagt
     2161 cgccgacgcc tgtccagcgc gtccagccca ggcctggacg ccggtctggt ggagcctccg
     2221 cggctgctgt catcgccgca cagcgcctct gtgctcaaga tcaagacaga gatcgccgag
     2281 cccatcaact tcgacaacga cagcagcatc tggaactacc cgcccaaccg ggagatctcc
     2341 aggaacgaat ccccgtacag catgaccaag ccccccacct ccgagcactt cccgtccccg
     2401 cagggccagg gaggcagcag cggtggcggg ggagcgctgc acgtggccat ccccgactcg
     2461 gtcctcaccc caccgggcgc cgatggcaca gctggccgca agactcagtt cagcggcaca
     2521 gccccggtgc cctctgatcc actgtcgccc ccgctctctg cgtccccgcg ggacaagcac
     2581 cccgggggcg gggcggggag tggcgggggt ggccctggtg catccaactc cttgctgtac
     2641 actggggacc tggaggccct gcagaggttg caagcgggca acgtcgtgct tccgctggtg
     2701 caccgggtga ccgggaccct ggcagccacc agcacagccg cacagagggt ctacaccacg
     2761 ggcactatcc gctacgcacc cgctgaggtg accctggcca tgcagggcaa cctgctaccc
     2821 aacgcgcatg ctgttaactt cgtggacgtt aacagcccag gctttggcct cgaccccaag
     2881 acacccatgg agatgctcta ccaccacgtg caccgactca acatgtcagg accatttggc
     2941 ggcgccgtga gcgcggccag cctcacacag atgccaggtg gcaacgtgtt caccacagcc
     3001 gagggactct tctccacgct gcccttccca gtctacagca acggtatcca cgcggcacag
     3061 actctggagc gcaaggagga ctgagcgggc cccactcagg aggcatcgtc gttttcgttt
     3121 agacctttca ttctagcact ttgaattcga gctggtcagc gtcttctcgc aacacggtgg
     3181 ccccatccca ccccctctct ttctttcatt agacttattc tttcttgtaa agacatgttt
     3241 attttttgcc ttcagagggt cagatgaccg gttgcctgcc attttgtctt ctaagatgtg
     3301 tgttgggttg tttgactttc ctttacatct ttattaagat gtctttaatg tgtatatgcc
     3361 tctgccatag aatactcagt cttgtggtca agagatttct caagtgacaa ccattgggtt
     3421 ttcttcctaa agatcttgat atgatcaaga tggaaagaga cacgcataaa cgattgtgcc
     3481 ctgtttgact aagtcaaatg aaatggggtg ggtgttttgt tttttgtttt tggttttttt
     3541 ttttttttcc tgttcctaat tcctttgaaa ataggggaat agtattttag aattttatgc
     3601 agaatttaat tctttttatg attaagattt taagattttt cttacttgca cacataaaaa
     3661 taatttggtt tcttaaactt aatttctggc ctgtgactag aatgtttgtt tttttgtttt
     3721 ttttttaaaa agtcggacta agtgttaatt actgaaacat taacttaatt tctaaaacca
     3781 tggtgctatc atttattaat ctataatgtc ttcatacaaa atgcagctcc tgggctggat
     3841 tttggaagag aaaatgtgtt ctgtcctggt ctggagtccc gttgctacag tcagtctcct
     3901 tggttagtta agacaaagcc ctcattaaca tttgctgcag gacttaaaaa ttttttacct
     3961 cccaactaac aaacatagcc tcactttcaa ttgaatgggt cagtaaagcc ctattaaaag
     4021 gggacttttg gacaactcgg actgatttga ggaacagttt aagtacatac tgccattttt
     4081 gagattcttt tgtccttagt cagtctaact gaggctggtt ttttgcaact tcagtaacac
     4141 ttcagagtaa aagaagaagg agaaatattt aacatgttct ttatttgggg tttttgtttg
     4201 tttttatttc ttgctaaaaa aaaataggtt tgtatggggg gtgctgattt gatagaattt
     4261 atttcccttc aattcttatt tgagttgaaa ccaacaagtt tttaaaacta aagaatgggt
     4321 taataagctt cagacagata actacaaccg aaaaccgcac attcaatgaa aaaaaaagag
     4381 aaaaaaaaaa gaaaaagaaa aagaaaaaag agcctatttt gtcttcgttg ccagaaatca
     4441 gtgtggtgtc aaacactcca aatgactgtc cagtgtagac tcttccccca cttcgttttt
     4501 ggcagctgtt tgttaaggca tctaatccca gatgtgaaaa ctgtaatgtg tgcaacgtgt
     4561 agtgtccttg gctgtgggtc ccattgcagt ttctgtgtgt ttctatatgc agtgtatgct
     4621 aagctactgt agtcgttttt tgtccccgtc ttctccgtgc tctgtctcta gtggagtggc
     4681 acagttccat tcctgcggtc ctagtgaatc ggtgactctt gggggttagt gggtttgtgt
     4741 ggtggccttt ccctgtgacg tcacccatat gcttctattg tctgtggatc ctgtcttact
     4801 tttcgaaatc cctgccgttg ctttgctgtt gtatactctc cctgcctccc ctgtctttcc
     4861 ctgtctgccc tttctctcct ctgcttcccc cttccctgat accccaaatc tgtatcattc
     4921 tcagagataa aaagaaaaaa gaaaaaaaaa gaaaaagaaa aaagactctt aactagctca
     4981 aggttaatgg agccatcttt cccacaacgg aattctggat gtgactttct ctgtggagta
     5041 ctacacagag ccctgaagaa taatgctcag atatattgaa taaattgacg ccatgcaacc
     5101 tcagctgtta acattcccag agtcccttgt gttctaccta taagcagtgg gtgcttttct
     5161 ttgctttcct ttcaggttgg ctgatggagc agtatataaa gcaattacca gttagacaga
     5221 aaatgatttc aaaggccaac caacattttt ttaaaaacaa aatgggaggg gttaatggaa
     5281 tatagaattg tcatatatat ttgtttattc gtgcaatgct aatatagtaa cttggctgtc
     5341 ctttgaattg tcactgtgct gagtggattt cctctagaac tctggattcc atgagttggg
     5401 cccaggccgt ggtagaataa taacagaaag aagataaatg ccacagatct tagcactggg
     5461 cttccttgaa ggacttaagt cagtttagaa gatgaaggaa gccgatggag aaatgtaaag
     5521 attagctttg gaagccgtcc tctagctatc gaacaatcaa gggaatgcac ctctcagcta
     5581 caaagaacag ccagacagct gggttttttt tttctttttc ttttataaat gtttctgtgt
     5641 tgtgtcaaaa tgatttctgg tgatttaaac taacagataa tcacagctgc tgtctaaatc
     5701 catagtgttt aaaaattaca aaatgaaaaa aaaaaaccac ttcattacct gtgaagactg
     5761 tgtctgtgtt tttaactatt tcttgtacaa atatatgaaa acttttatga ggagactggt
     5821 gccacgtagc tgaataatgg ggaaagggat ctttctgttc gtaaaaacct tagcagtgtt
     5881 accaactcta caatatatat atacaaataa ttaaagcgtt acaaagcgac agctatgcta
     5941 catttgtttt gtgtgaagct aaccggactt aacttcctga gtgcctggct tattttgaaa
     6001 catttttttc attgaccatt gataatgctg caaatcagaa atgtacatac ttcatttaca
     6061 acagggttct ttttatactt ttgtagattc tcatacatgt cacatacatg gttgtcttta
     6121 tgtaacttaa ttttttcatc cgcaggtgcc attttcataa taaacttctc ttggatttgt
     6181 tac
//
