LOCUS       XM_036157458            6188 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuronal PAS domain protein 3 (Npas3),
            transcript variant X37, mRNA.
ACCESSION   XM_036157458
VERSION     XM_036157458.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6188
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..6188
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 1650 long SRA reads, 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
     CDS             630..3089
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X36"
                     /protein_id="XP_036013351.1"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
                     /translation="MRDFANQGDPPWNLRMEGPPPNTSVKVIGAQRRRSPSALAIEVF
                     EAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHV
                     EMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLLTTDNTLERS
                     FFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPP
                     PTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGI
                     RHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNP
                     EYKDTPMDIAQLPHLPEKASESSETSDSESDSKDTSGITAEDNENSKSDEKGNQSENS
                     EDPEPDRKKSGSACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFEHPKAAEDGFGALG
                     PMQIKVERYVESEADLRLQPCESLTSDSAKDSDSANEAGAQASSKHQKRKRRRKRQKG
                     GSASRRRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPINFDNDSSIWNYP
                     PNREISRNESPYSMTKPPTSEHFPSPQGQGGSSGGGGALHVAIPDSVLTPPGADGTAG
                     RKTQFSGTAPVPSDPLSPPLSASPRDKHPGGGAGSGGGGPGASNSLLYTGDLEALQRL
                     QAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFV
                     DVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPGGNVFTTAEGLFST
                     LPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 gcacagtggc cgcggctcac taatgggatt gcaggctggt gcctggctcc gctgctgccg
       61 ccgctcgcgc cgctgctgcc gccgccgccc gaacccgagc ccgagccccc gccagcccga
      121 gcccagagca gccgcgcctg gggctccaag ccgcggcgat gatccgaatc tttccggatt
      181 tcagcgtgca ggtgacggcc gcggcggccg gcggggcagc cgctggggta ccggccggtg
      241 cgggcatggg gagggccggc gccgcggcca acggcacccc gcagaacgtc cagggcatca
      301 cctcctacca gcagcgtatt tttccataga tgatgaaatc cagtgtcaca tccatgccag
      361 aaatttaaca gagaataact gcccagcatc ctctgcccaa ccaatcagaa tgtaggaaaa
      421 tctacagata tgacggaatc tactgtgaat ctacctacca gaatttacaa gcactgagaa
      481 aggagaaatc cagagatgct gctcgatccc gccggggaaa agaaaatttt gagttctatg
      541 aattggccaa gctgttgcct cttcctgccg ccatcaccag ccagctcgac aaggcatcca
      601 tcatccgact tacaattagt tatctcaaga tgagagactt tgccaaccaa ggggatcctc
      661 catggaacct gaggatggaa ggccctccac caaacacctc agtaaaagtt ataggtgcac
      721 aacgaaggcg gagccccagc gcactggcca ttgaagtatt tgaagcacat ttgggaagcc
      781 acattttgca gtccctggat ggcttcgtat ttgcactaaa tcaagaagga aaatttttgt
      841 acatttctga aaccgtctct atctacctag gcctctcaca agtggagctg acaggtagca
      901 gcgtctttga ctatgtccac cctggggacc acgtggagat ggcagagcag ctgggcatga
      961 agctcccgcc tgggcggggt ctcctctcgc agggcaccac agaggacgcg gccagttcag
     1021 catcttcctc ttctcagtca gagacccctg agccagtgga gacgaccagc cctagtctgc
     1081 taaccacgga caacaccctt gaacggtcct ttttcatccg aatgaagtct actctgacca
     1141 aacgtggagt ccacatcaag tcatctgggt ataaggtgat tcacataaca ggccggcttc
     1201 gcctcagagt gtcgctgtcc cacgggagga ccgtccccag ccaaatcatg ggtctggtgg
     1261 ttgtggctca cgccttgcct ccccctacga tcaatgaagt cagaattgac tgccatatgt
     1321 tcgtcactcg agtaaacatg gatctcaata tcatttactg tgaaaatagg attagtgatt
     1381 acatggatct gacccctgta gacatcgtag ggaaaagatg ctaccacttc atccatgccg
     1441 aagatgtaga aggcatcagg cacagtcacc tggacttgct gaataagggt cagtgtgtga
     1501 ccaagtacta ccgctggatg cagaagaatg gaggctacat ctggatacag tctagtgcca
     1561 ccatagctat taatgcgaag aatgcaaatg agaagaacat catctgggtg aattatcttc
     1621 ttagtaatcc ggagtacaag gacacaccca tggacattgc gcaactcccg catttgccag
     1681 agaaagcgtc agaatcctca gagacatccg actctgagtc agactctaaa gacacctcag
     1741 gtattacagc agaggacaat gagaactcca agtccgacga gaagggcaat cagtccgaga
     1801 atagcgaaga tccggagcct gaccgcaaga agtcaggcag cgcatgcgac aacgacatga
     1861 actgcaacga cgatggccac agctccagca acccggacag ccgtgacagc gacgacagct
     1921 tcgagcactc ggactttgaa caccccaagg cggccgagga tggcttcggc gcgctgggcc
     1981 ctatgcagat caaagtggag cgctacgtgg agagcgaggc ggacctgcga ctgcagccct
     2041 gcgagtcgct cacgtcggac agcgccaagg actcagacag cgcgaacgag gcgggcgctc
     2101 aggcatccag caagcaccag aagcgcaagc ggcggcggaa acggcagaag ggcggcagcg
     2161 ccagtcgccg acgcctgtcc agcgcgtcca gcccaggcct ggacgccggt ctggtggagc
     2221 ctccgcggct gctgtcatcg ccgcacagcg cctctgtgct caagatcaag acagagatcg
     2281 ccgagcccat caacttcgac aacgacagca gcatctggaa ctacccgccc aaccgggaga
     2341 tctccaggaa cgaatccccg tacagcatga ccaagccccc cacctccgag cacttcccgt
     2401 ccccgcaggg ccagggaggc agcagcggtg gcgggggagc gctgcacgtg gccatccccg
     2461 actcggtcct caccccaccg ggcgccgatg gcacagctgg ccgcaagact cagttcagcg
     2521 gcacagcccc ggtgccctct gatccactgt cgcccccgct ctctgcgtcc ccgcgggaca
     2581 agcaccccgg gggcggggcg gggagtggcg ggggtggccc tggtgcatcc aactccttgc
     2641 tgtacactgg ggacctggag gccctgcaga ggttgcaagc gggcaacgtc gtgcttccgc
     2701 tggtgcaccg ggtgaccggg accctggcag ccaccagcac agccgcacag agggtctaca
     2761 ccacgggcac tatccgctac gcacccgctg aggtgaccct ggccatgcag ggcaacctgc
     2821 tacccaacgc gcatgctgtt aacttcgtgg acgttaacag cccaggcttt ggcctcgacc
     2881 ccaagacacc catggagatg ctctaccacc acgtgcaccg actcaacatg tcaggaccat
     2941 ttggcggcgc cgtgagcgcg gccagcctca cacagatgcc aggtggcaac gtgttcacca
     3001 cagccgaggg actcttctcc acgctgccct tcccagtcta cagcaacggt atccacgcgg
     3061 cacagactct ggagcgcaag gaggactgag cgggccccac tcaggaggca tcgtcgtttt
     3121 cgtttagacc tttcattcta gcactttgaa ttcgagctgg tcagcgtctt ctcgcaacac
     3181 ggtggcccca tcccaccccc tctctttctt tcattagact tattctttct tgtaaagaca
     3241 tgtttatttt ttgccttcag agggtcagat gaccggttgc ctgccatttt gtcttctaag
     3301 atgtgtgttg ggttgtttga ctttccttta catctttatt aagatgtctt taatgtgtat
     3361 atgcctctgc catagaatac tcagtcttgt ggtcaagaga tttctcaagt gacaaccatt
     3421 gggttttctt cctaaagatc ttgatatgat caagatggaa agagacacgc ataaacgatt
     3481 gtgccctgtt tgactaagtc aaatgaaatg gggtgggtgt tttgtttttt gtttttggtt
     3541 tttttttttt tttcctgttc ctaattcctt tgaaaatagg ggaatagtat tttagaattt
     3601 tatgcagaat ttaattcttt ttatgattaa gattttaaga tttttcttac ttgcacacat
     3661 aaaaataatt tggtttctta aacttaattt ctggcctgtg actagaatgt ttgttttttt
     3721 gttttttttt taaaaagtcg gactaagtgt taattactga aacattaact taatttctaa
     3781 aaccatggtg ctatcattta ttaatctata atgtcttcat acaaaatgca gctcctgggc
     3841 tggattttgg aagagaaaat gtgttctgtc ctggtctgga gtcccgttgc tacagtcagt
     3901 ctccttggtt agttaagaca aagccctcat taacatttgc tgcaggactt aaaaattttt
     3961 tacctcccaa ctaacaaaca tagcctcact ttcaattgaa tgggtcagta aagccctatt
     4021 aaaaggggac ttttggacaa ctcggactga tttgaggaac agtttaagta catactgcca
     4081 tttttgagat tcttttgtcc ttagtcagtc taactgaggc tggttttttg caacttcagt
     4141 aacacttcag agtaaaagaa gaaggagaaa tatttaacat gttctttatt tggggttttt
     4201 gtttgttttt atttcttgct aaaaaaaaat aggtttgtat ggggggtgct gatttgatag
     4261 aatttatttc ccttcaattc ttatttgagt tgaaaccaac aagtttttaa aactaaagaa
     4321 tgggttaata agcttcagac agataactac aaccgaaaac cgcacattca atgaaaaaaa
     4381 aagagaaaaa aaaaagaaaa agaaaaagaa aaaagagcct attttgtctt cgttgccaga
     4441 aatcagtgtg gtgtcaaaca ctccaaatga ctgtccagtg tagactcttc ccccacttcg
     4501 tttttggcag ctgtttgtta aggcatctaa tcccagatgt gaaaactgta atgtgtgcaa
     4561 cgtgtagtgt ccttggctgt gggtcccatt gcagtttctg tgtgtttcta tatgcagtgt
     4621 atgctaagct actgtagtcg ttttttgtcc ccgtcttctc cgtgctctgt ctctagtgga
     4681 gtggcacagt tccattcctg cggtcctagt gaatcggtga ctcttggggg ttagtgggtt
     4741 tgtgtggtgg cctttccctg tgacgtcacc catatgcttc tattgtctgt ggatcctgtc
     4801 ttacttttcg aaatccctgc cgttgctttg ctgttgtata ctctccctgc ctcccctgtc
     4861 tttccctgtc tgccctttct ctcctctgct tcccccttcc ctgatacccc aaatctgtat
     4921 cattctcaga gataaaaaga aaaaagaaaa aaaaagaaaa agaaaaaaga ctcttaacta
     4981 gctcaaggtt aatggagcca tctttcccac aacggaattc tggatgtgac tttctctgtg
     5041 gagtactaca cagagccctg aagaataatg ctcagatata ttgaataaat tgacgccatg
     5101 caacctcagc tgttaacatt cccagagtcc cttgtgttct acctataagc agtgggtgct
     5161 tttctttgct ttcctttcag gttggctgat ggagcagtat ataaagcaat taccagttag
     5221 acagaaaatg atttcaaagg ccaaccaaca tttttttaaa aacaaaatgg gaggggttaa
     5281 tggaatatag aattgtcata tatatttgtt tattcgtgca atgctaatat agtaacttgg
     5341 ctgtcctttg aattgtcact gtgctgagtg gatttcctct agaactctgg attccatgag
     5401 ttgggcccag gccgtggtag aataataaca gaaagaagat aaatgccaca gatcttagca
     5461 ctgggcttcc ttgaaggact taagtcagtt tagaagatga aggaagccga tggagaaatg
     5521 taaagattag ctttggaagc cgtcctctag ctatcgaaca atcaagggaa tgcacctctc
     5581 agctacaaag aacagccaga cagctgggtt ttttttttct ttttctttta taaatgtttc
     5641 tgtgttgtgt caaaatgatt tctggtgatt taaactaaca gataatcaca gctgctgtct
     5701 aaatccatag tgtttaaaaa ttacaaaatg aaaaaaaaaa accacttcat tacctgtgaa
     5761 gactgtgtct gtgtttttaa ctatttcttg tacaaatata tgaaaacttt tatgaggaga
     5821 ctggtgccac gtagctgaat aatggggaaa gggatctttc tgttcgtaaa aaccttagca
     5881 gtgttaccaa ctctacaata tatatataca aataattaaa gcgttacaaa gcgacagcta
     5941 tgctacattt gttttgtgtg aagctaaccg gacttaactt cctgagtgcc tggcttattt
     6001 tgaaacattt ttttcattga ccattgataa tgctgcaaat cagaaatgta catacttcat
     6061 ttacaacagg gttcttttta tacttttgta gattctcata catgtcacat acatggttgt
     6121 ctttatgtaa cttaattttt tcatccgcag gtgccatttt cataataaac ttctcttgga
     6181 tttgttac
//
