LOCUS       XM_036157455            6370 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuronal PAS domain protein 3 (Npas3),
            transcript variant X32, mRNA.
ACCESSION   XM_036157455
VERSION     XM_036157455.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6370
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..6370
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 1713 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 16 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
     CDS             497..3271
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X32"
                     /protein_id="XP_036013348.1"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRL
                     TISYLKMRDFANQGDPPWNLRMEGPPPNTSVKVIGAQRRRSPSALAIEVFEAHLGSHI
                     LQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGM
                     KLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLLTTDNTLERSFFIRMKST
                     LTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRI
                     DCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLL
                     NKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMD
                     IAQLPHLPEKASESSETSDSESDSKDTSAEDNENSKSDEKGNQSENSEDPEPDRKKSG
                     SACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFEHPKAAEDGFGALGPMQIKVERYVE
                     SEADLRLQPCESLTSDSAKDSDSANEAGAQASSKHQKRKRRRKRQKGGSASRRRLSSA
                     SSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPINFDNDSSIWNYPPNREISRNESP
                     YSMTKPPTSEHFPSPQGQGGSSGGGGALHVAIPDSVLTPPGADGTAGRKTQFSGTAPV
                     PSDPLSPPLSASPRDKHPGGGAGSGGGGPGASNSLLYTGDLEALQRLQAGNVVLPLVH
                     RVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDP
                     KTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPGGNVFTTAEGLFSTLPFPVYSNGIH
                     AAQTLERKED"
ORIGIN      
        1 gtgtgtgtgt gtgtgtgtgt agaagaggga gggaaaacgc accctccact gctcgttatt
       61 cccttgcacc ggccaagcgc tcgccaagcc tcccggtgca tccttcctcc ttcaccccct
      121 cctcctctca gctgggctcg cgcggcgctg ctggagcagc cagtgaaagc aacatcctgg
      181 aaagaggggg gagcaacagt gccccccaaa agggagaaaa ggccccaccc tgacacgttt
      241 tgctgtttgc aagtccctcg cacacccccc gcacctcctc ctcgccaccc ccccccacct
      301 cagcccgctg cgcgcacatc aaagcgcctc tccgccgcgc acagtggccg cggctcacta
      361 atgggattgc aggctggtgc ctggctccgc tgctgccgcc gctcgcgccg ctgctgccgc
      421 cgccgcccga acccgagccc gagcccccgc cagcccgagc ccagagcagc cgcgcctggg
      481 gctccaagcc gcggcgatga tccgaatctt tccggatttc agcgtgcagg tgacggccgc
      541 ggcggccggc ggggcagccg ctggggtacc ggccggtgcg ggcatgggga gggccggcgc
      601 cgcggccaac ggcaccccgc agaacgtcca gggcatcacc tcctaccagc agcgtttaca
      661 agcactgaga aaggagaaat ccagagatgc tgctcgatcc cgccggggaa aagaaaattt
      721 tgagttctat gaattggcca agctgttgcc tcttcctgcc gccatcacca gccagctcga
      781 caaggcatcc atcatccgac ttacaattag ttatctcaag atgagagact ttgccaacca
      841 aggggatcct ccatggaacc tgaggatgga aggccctcca ccaaacacct cagtaaaagt
      901 tataggtgca caacgaaggc ggagccccag cgcactggcc attgaagtat ttgaagcaca
      961 tttgggaagc cacattttgc agtccctgga tggcttcgta tttgcactaa atcaagaagg
     1021 aaaatttttg tacatttctg aaaccgtctc tatctaccta ggcctctcac aagtggagct
     1081 gacaggtagc agcgtctttg actatgtcca ccctggggac cacgtggaga tggcagagca
     1141 gctgggcatg aagctcccgc ctgggcgggg tctcctctcg cagggcacca cagaggacgc
     1201 ggccagttca gcatcttcct cttctcagtc agagacccct gagccagtgg agacgaccag
     1261 ccctagtctg ctaaccacgg acaacaccct tgaacggtcc tttttcatcc gaatgaagtc
     1321 tactctgacc aaacgtggag tccacatcaa gtcatctggg tataaggtga ttcacataac
     1381 aggccggctt cgcctcagag tgtcgctgtc ccacgggagg accgtcccca gccaaatcat
     1441 gggtctggtg gttgtggctc acgccttgcc tccccctacg atcaatgaag tcagaattga
     1501 ctgccatatg ttcgtcactc gagtaaacat ggatctcaat atcatttact gtgaaaatag
     1561 gattagtgat tacatggatc tgacccctgt agacatcgta gggaaaagat gctaccactt
     1621 catccatgcc gaagatgtag aaggcatcag gcacagtcac ctggacttgc tgaataaggg
     1681 tcagtgtgtg accaagtact accgctggat gcagaagaat ggaggctaca tctggataca
     1741 gtctagtgcc accatagcta ttaatgcgaa gaatgcaaat gagaagaaca tcatctgggt
     1801 gaattatctt cttagtaatc cggagtacaa ggacacaccc atggacattg cgcaactccc
     1861 gcatttgcca gagaaagcgt cagaatcctc agagacatcc gactctgagt cagactctaa
     1921 agacacctca gcagaggaca atgagaactc caagtccgac gagaagggca atcagtccga
     1981 gaatagcgaa gatccggagc ctgaccgcaa gaagtcaggc agcgcatgcg acaacgacat
     2041 gaactgcaac gacgatggcc acagctccag caacccggac agccgtgaca gcgacgacag
     2101 cttcgagcac tcggactttg aacaccccaa ggcggccgag gatggcttcg gcgcgctggg
     2161 ccctatgcag atcaaagtgg agcgctacgt ggagagcgag gcggacctgc gactgcagcc
     2221 ctgcgagtcg ctcacgtcgg acagcgccaa ggactcagac agcgcgaacg aggcgggcgc
     2281 tcaggcatcc agcaagcacc agaagcgcaa gcggcggcgg aaacggcaga agggcggcag
     2341 cgccagtcgc cgacgcctgt ccagcgcgtc cagcccaggc ctggacgccg gtctggtgga
     2401 gcctccgcgg ctgctgtcat cgccgcacag cgcctctgtg ctcaagatca agacagagat
     2461 cgccgagccc atcaacttcg acaacgacag cagcatctgg aactacccgc ccaaccggga
     2521 gatctccagg aacgaatccc cgtacagcat gaccaagccc cccacctccg agcacttccc
     2581 gtccccgcag ggccagggag gcagcagcgg tggcggggga gcgctgcacg tggccatccc
     2641 cgactcggtc ctcaccccac cgggcgccga tggcacagct ggccgcaaga ctcagttcag
     2701 cggcacagcc ccggtgccct ctgatccact gtcgcccccg ctctctgcgt ccccgcggga
     2761 caagcacccc gggggcgggg cggggagtgg cgggggtggc cctggtgcat ccaactcctt
     2821 gctgtacact ggggacctgg aggccctgca gaggttgcaa gcgggcaacg tcgtgcttcc
     2881 gctggtgcac cgggtgaccg ggaccctggc agccaccagc acagccgcac agagggtcta
     2941 caccacgggc actatccgct acgcacccgc tgaggtgacc ctggccatgc agggcaacct
     3001 gctacccaac gcgcatgctg ttaacttcgt ggacgttaac agcccaggct ttggcctcga
     3061 ccccaagaca cccatggaga tgctctacca ccacgtgcac cgactcaaca tgtcaggacc
     3121 atttggcggc gccgtgagcg cggccagcct cacacagatg ccaggtggca acgtgttcac
     3181 cacagccgag ggactcttct ccacgctgcc cttcccagtc tacagcaacg gtatccacgc
     3241 ggcacagact ctggagcgca aggaggactg agcgggcccc actcaggagg catcgtcgtt
     3301 ttcgtttaga cctttcattc tagcactttg aattcgagct ggtcagcgtc ttctcgcaac
     3361 acggtggccc catcccaccc cctctctttc tttcattaga cttattcttt cttgtaaaga
     3421 catgtttatt ttttgccttc agagggtcag atgaccggtt gcctgccatt ttgtcttcta
     3481 agatgtgtgt tgggttgttt gactttcctt tacatcttta ttaagatgtc tttaatgtgt
     3541 atatgcctct gccatagaat actcagtctt gtggtcaaga gatttctcaa gtgacaacca
     3601 ttgggttttc ttcctaaaga tcttgatatg atcaagatgg aaagagacac gcataaacga
     3661 ttgtgccctg tttgactaag tcaaatgaaa tggggtgggt gttttgtttt ttgtttttgg
     3721 tttttttttt tttttcctgt tcctaattcc tttgaaaata ggggaatagt attttagaat
     3781 tttatgcaga atttaattct ttttatgatt aagattttaa gatttttctt acttgcacac
     3841 ataaaaataa tttggtttct taaacttaat ttctggcctg tgactagaat gtttgttttt
     3901 ttgttttttt tttaaaaagt cggactaagt gttaattact gaaacattaa cttaatttct
     3961 aaaaccatgg tgctatcatt tattaatcta taatgtcttc atacaaaatg cagctcctgg
     4021 gctggatttt ggaagagaaa atgtgttctg tcctggtctg gagtcccgtt gctacagtca
     4081 gtctccttgg ttagttaaga caaagccctc attaacattt gctgcaggac ttaaaaattt
     4141 tttacctccc aactaacaaa catagcctca ctttcaattg aatgggtcag taaagcccta
     4201 ttaaaagggg acttttggac aactcggact gatttgagga acagtttaag tacatactgc
     4261 catttttgag attcttttgt ccttagtcag tctaactgag gctggttttt tgcaacttca
     4321 gtaacacttc agagtaaaag aagaaggaga aatatttaac atgttcttta tttggggttt
     4381 ttgtttgttt ttatttcttg ctaaaaaaaa ataggtttgt atggggggtg ctgatttgat
     4441 agaatttatt tcccttcaat tcttatttga gttgaaacca acaagttttt aaaactaaag
     4501 aatgggttaa taagcttcag acagataact acaaccgaaa accgcacatt caatgaaaaa
     4561 aaaagagaaa aaaaaaagaa aaagaaaaag aaaaaagagc ctattttgtc ttcgttgcca
     4621 gaaatcagtg tggtgtcaaa cactccaaat gactgtccag tgtagactct tcccccactt
     4681 cgtttttggc agctgtttgt taaggcatct aatcccagat gtgaaaactg taatgtgtgc
     4741 aacgtgtagt gtccttggct gtgggtccca ttgcagtttc tgtgtgtttc tatatgcagt
     4801 gtatgctaag ctactgtagt cgttttttgt ccccgtcttc tccgtgctct gtctctagtg
     4861 gagtggcaca gttccattcc tgcggtccta gtgaatcggt gactcttggg ggttagtggg
     4921 tttgtgtggt ggcctttccc tgtgacgtca cccatatgct tctattgtct gtggatcctg
     4981 tcttactttt cgaaatccct gccgttgctt tgctgttgta tactctccct gcctcccctg
     5041 tctttccctg tctgcccttt ctctcctctg cttccccctt ccctgatacc ccaaatctgt
     5101 atcattctca gagataaaaa gaaaaaagaa aaaaaaagaa aaagaaaaaa gactcttaac
     5161 tagctcaagg ttaatggagc catctttccc acaacggaat tctggatgtg actttctctg
     5221 tggagtacta cacagagccc tgaagaataa tgctcagata tattgaataa attgacgcca
     5281 tgcaacctca gctgttaaca ttcccagagt cccttgtgtt ctacctataa gcagtgggtg
     5341 cttttctttg ctttcctttc aggttggctg atggagcagt atataaagca attaccagtt
     5401 agacagaaaa tgatttcaaa ggccaaccaa cattttttta aaaacaaaat gggaggggtt
     5461 aatggaatat agaattgtca tatatatttg tttattcgtg caatgctaat atagtaactt
     5521 ggctgtcctt tgaattgtca ctgtgctgag tggatttcct ctagaactct ggattccatg
     5581 agttgggccc aggccgtggt agaataataa cagaaagaag ataaatgcca cagatcttag
     5641 cactgggctt ccttgaagga cttaagtcag tttagaagat gaaggaagcc gatggagaaa
     5701 tgtaaagatt agctttggaa gccgtcctct agctatcgaa caatcaaggg aatgcacctc
     5761 tcagctacaa agaacagcca gacagctggg tttttttttt ctttttcttt tataaatgtt
     5821 tctgtgttgt gtcaaaatga tttctggtga tttaaactaa cagataatca cagctgctgt
     5881 ctaaatccat agtgtttaaa aattacaaaa tgaaaaaaaa aaaccacttc attacctgtg
     5941 aagactgtgt ctgtgttttt aactatttct tgtacaaata tatgaaaact tttatgagga
     6001 gactggtgcc acgtagctga ataatgggga aagggatctt tctgttcgta aaaaccttag
     6061 cagtgttacc aactctacaa tatatatata caaataatta aagcgttaca aagcgacagc
     6121 tatgctacat ttgttttgtg tgaagctaac cggacttaac ttcctgagtg cctggcttat
     6181 tttgaaacat ttttttcatt gaccattgat aatgctgcaa atcagaaatg tacatacttc
     6241 atttacaaca gggttctttt tatacttttg tagattctca tacatgtcac atacatggtt
     6301 gtctttatgt aacttaattt tttcatccgc aggtgccatt ttcataataa acttctcttg
     6361 gatttgttac
//
