LOCUS       XM_036157454            6373 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuronal PAS domain protein 3 (Npas3),
            transcript variant X31, mRNA.
ACCESSION   XM_036157454
VERSION     XM_036157454.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6373
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..6373
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 1693 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
     CDS             497..3274
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X31"
                     /protein_id="XP_036013347.1"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRL
                     TISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGAQRRRSPSALAIEVFEAHLGSHILQ
                     SLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKL
                     PPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLLTTDNTLERSFFIRMKSTLT
                     KRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDC
                     HMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNK
                     GQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIA
                     QLPHLPEKASESSETSDSESDSKDTSGITAEDNENSKSDEKGNQSENSEDPEPDRKKS
                     GSACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFEHPKAAEDGFGALGPMQIKVERYV
                     ESEADLRLQPCESLTSDSAKDSDSANEAGAQASSKHQKRKRRRKRQKGGSASRRRLSS
                     ASSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPINFDNDSSIWNYPPNREISRNES
                     PYSMTKPPTSEHFPSPQGQGGSSGGGGALHVAIPDSVLTPPGADGTAGRKTQFSGTAP
                     VPSDPLSPPLSASPRDKHPGGGAGSGGGGPGASNSLLYTGDLEALQRLQAGNVVLPLV
                     HRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLD
                     PKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPGGNVFTTAEGLFSTLPFPVYSNGI
                     HAAQTLERKED"
ORIGIN      
        1 gtgtgtgtgt gtgtgtgtgt agaagaggga gggaaaacgc accctccact gctcgttatt
       61 cccttgcacc ggccaagcgc tcgccaagcc tcccggtgca tccttcctcc ttcaccccct
      121 cctcctctca gctgggctcg cgcggcgctg ctggagcagc cagtgaaagc aacatcctgg
      181 aaagaggggg gagcaacagt gccccccaaa agggagaaaa ggccccaccc tgacacgttt
      241 tgctgtttgc aagtccctcg cacacccccc gcacctcctc ctcgccaccc ccccccacct
      301 cagcccgctg cgcgcacatc aaagcgcctc tccgccgcgc acagtggccg cggctcacta
      361 atgggattgc aggctggtgc ctggctccgc tgctgccgcc gctcgcgccg ctgctgccgc
      421 cgccgcccga acccgagccc gagcccccgc cagcccgagc ccagagcagc cgcgcctggg
      481 gctccaagcc gcggcgatga tccgaatctt tccggatttc agcgtgcagg tgacggccgc
      541 ggcggccggc ggggcagccg ctggggtacc ggccggtgcg ggcatgggga gggccggcgc
      601 cgcggccaac ggcaccccgc agaacgtcca gggcatcacc tcctaccagc agcgtttaca
      661 agcactgaga aaggagaaat ccagagatgc tgctcgatcc cgccggggaa aagaaaattt
      721 tgagttctat gaattggcca agctgttgcc tcttcctgcc gccatcacca gccagctcga
      781 caaggcatcc atcatccgac ttacaattag ttatctcaag atgagagact ttgccaacca
      841 aggggatcct ccatggaacc tgaggatgga aggccctcca ccaaacacct cagtaaaagg
      901 tgcacaacga aggcggagcc ccagcgcact ggccattgaa gtatttgaag cacatttggg
      961 aagccacatt ttgcagtccc tggatggctt cgtatttgca ctaaatcaag aaggaaaatt
     1021 tttgtacatt tctgaaaccg tctctatcta cctaggcctc tcacaagtgg agctgacagg
     1081 tagcagcgtc tttgactatg tccaccctgg ggaccacgtg gagatggcag agcagctggg
     1141 catgaagctc ccgcctgggc ggggtctcct ctcgcagggc accacagagg acgcggccag
     1201 ttcagcatct tcctcttctc agtcagagac ccctgagcca gtggagacga ccagccctag
     1261 tctgctaacc acggacaaca cccttgaacg gtcctttttc atccgaatga agtctactct
     1321 gaccaaacgt ggagtccaca tcaagtcatc tgggtataag gtgattcaca taacaggccg
     1381 gcttcgcctc agagtgtcgc tgtcccacgg gaggaccgtc cccagccaaa tcatgggtct
     1441 ggtggttgtg gctcacgcct tgcctccccc tacgatcaat gaagtcagaa ttgactgcca
     1501 tatgttcgtc actcgagtaa acatggatct caatatcatt tactgtgaaa ataggattag
     1561 tgattacatg gatctgaccc ctgtagacat cgtagggaaa agatgctacc acttcatcca
     1621 tgccgaagat gtagaaggca tcaggcacag tcacctggac ttgctgaata agggtcagtg
     1681 tgtgaccaag tactaccgct ggatgcagaa gaatggaggc tacatctgga tacagtctag
     1741 tgccaccata gctattaatg cgaagaatgc aaatgagaag aacatcatct gggtgaatta
     1801 tcttcttagt aatccggagt acaaggacac acccatggac attgcgcaac tcccgcattt
     1861 gccagagaaa gcgtcagaat cctcagagac atccgactct gagtcagact ctaaagacac
     1921 ctcaggtatt acagcagagg acaatgagaa ctccaagtcc gacgagaagg gcaatcagtc
     1981 cgagaatagc gaagatccgg agcctgaccg caagaagtca ggcagcgcat gcgacaacga
     2041 catgaactgc aacgacgatg gccacagctc cagcaacccg gacagccgtg acagcgacga
     2101 cagcttcgag cactcggact ttgaacaccc caaggcggcc gaggatggct tcggcgcgct
     2161 gggccctatg cagatcaaag tggagcgcta cgtggagagc gaggcggacc tgcgactgca
     2221 gccctgcgag tcgctcacgt cggacagcgc caaggactca gacagcgcga acgaggcggg
     2281 cgctcaggca tccagcaagc accagaagcg caagcggcgg cggaaacggc agaagggcgg
     2341 cagcgccagt cgccgacgcc tgtccagcgc gtccagccca ggcctggacg ccggtctggt
     2401 ggagcctccg cggctgctgt catcgccgca cagcgcctct gtgctcaaga tcaagacaga
     2461 gatcgccgag cccatcaact tcgacaacga cagcagcatc tggaactacc cgcccaaccg
     2521 ggagatctcc aggaacgaat ccccgtacag catgaccaag ccccccacct ccgagcactt
     2581 cccgtccccg cagggccagg gaggcagcag cggtggcggg ggagcgctgc acgtggccat
     2641 ccccgactcg gtcctcaccc caccgggcgc cgatggcaca gctggccgca agactcagtt
     2701 cagcggcaca gccccggtgc cctctgatcc actgtcgccc ccgctctctg cgtccccgcg
     2761 ggacaagcac cccgggggcg gggcggggag tggcgggggt ggccctggtg catccaactc
     2821 cttgctgtac actggggacc tggaggccct gcagaggttg caagcgggca acgtcgtgct
     2881 tccgctggtg caccgggtga ccgggaccct ggcagccacc agcacagccg cacagagggt
     2941 ctacaccacg ggcactatcc gctacgcacc cgctgaggtg accctggcca tgcagggcaa
     3001 cctgctaccc aacgcgcatg ctgttaactt cgtggacgtt aacagcccag gctttggcct
     3061 cgaccccaag acacccatgg agatgctcta ccaccacgtg caccgactca acatgtcagg
     3121 accatttggc ggcgccgtga gcgcggccag cctcacacag atgccaggtg gcaacgtgtt
     3181 caccacagcc gagggactct tctccacgct gcccttccca gtctacagca acggtatcca
     3241 cgcggcacag actctggagc gcaaggagga ctgagcgggc cccactcagg aggcatcgtc
     3301 gttttcgttt agacctttca ttctagcact ttgaattcga gctggtcagc gtcttctcgc
     3361 aacacggtgg ccccatccca ccccctctct ttctttcatt agacttattc tttcttgtaa
     3421 agacatgttt attttttgcc ttcagagggt cagatgaccg gttgcctgcc attttgtctt
     3481 ctaagatgtg tgttgggttg tttgactttc ctttacatct ttattaagat gtctttaatg
     3541 tgtatatgcc tctgccatag aatactcagt cttgtggtca agagatttct caagtgacaa
     3601 ccattgggtt ttcttcctaa agatcttgat atgatcaaga tggaaagaga cacgcataaa
     3661 cgattgtgcc ctgtttgact aagtcaaatg aaatggggtg ggtgttttgt tttttgtttt
     3721 tggttttttt ttttttttcc tgttcctaat tcctttgaaa ataggggaat agtattttag
     3781 aattttatgc agaatttaat tctttttatg attaagattt taagattttt cttacttgca
     3841 cacataaaaa taatttggtt tcttaaactt aatttctggc ctgtgactag aatgtttgtt
     3901 tttttgtttt ttttttaaaa agtcggacta agtgttaatt actgaaacat taacttaatt
     3961 tctaaaacca tggtgctatc atttattaat ctataatgtc ttcatacaaa atgcagctcc
     4021 tgggctggat tttggaagag aaaatgtgtt ctgtcctggt ctggagtccc gttgctacag
     4081 tcagtctcct tggttagtta agacaaagcc ctcattaaca tttgctgcag gacttaaaaa
     4141 ttttttacct cccaactaac aaacatagcc tcactttcaa ttgaatgggt cagtaaagcc
     4201 ctattaaaag gggacttttg gacaactcgg actgatttga ggaacagttt aagtacatac
     4261 tgccattttt gagattcttt tgtccttagt cagtctaact gaggctggtt ttttgcaact
     4321 tcagtaacac ttcagagtaa aagaagaagg agaaatattt aacatgttct ttatttgggg
     4381 tttttgtttg tttttatttc ttgctaaaaa aaaataggtt tgtatggggg gtgctgattt
     4441 gatagaattt atttcccttc aattcttatt tgagttgaaa ccaacaagtt tttaaaacta
     4501 aagaatgggt taataagctt cagacagata actacaaccg aaaaccgcac attcaatgaa
     4561 aaaaaaagag aaaaaaaaaa gaaaaagaaa aagaaaaaag agcctatttt gtcttcgttg
     4621 ccagaaatca gtgtggtgtc aaacactcca aatgactgtc cagtgtagac tcttccccca
     4681 cttcgttttt ggcagctgtt tgttaaggca tctaatccca gatgtgaaaa ctgtaatgtg
     4741 tgcaacgtgt agtgtccttg gctgtgggtc ccattgcagt ttctgtgtgt ttctatatgc
     4801 agtgtatgct aagctactgt agtcgttttt tgtccccgtc ttctccgtgc tctgtctcta
     4861 gtggagtggc acagttccat tcctgcggtc ctagtgaatc ggtgactctt gggggttagt
     4921 gggtttgtgt ggtggccttt ccctgtgacg tcacccatat gcttctattg tctgtggatc
     4981 ctgtcttact tttcgaaatc cctgccgttg ctttgctgtt gtatactctc cctgcctccc
     5041 ctgtctttcc ctgtctgccc tttctctcct ctgcttcccc cttccctgat accccaaatc
     5101 tgtatcattc tcagagataa aaagaaaaaa gaaaaaaaaa gaaaaagaaa aaagactctt
     5161 aactagctca aggttaatgg agccatcttt cccacaacgg aattctggat gtgactttct
     5221 ctgtggagta ctacacagag ccctgaagaa taatgctcag atatattgaa taaattgacg
     5281 ccatgcaacc tcagctgtta acattcccag agtcccttgt gttctaccta taagcagtgg
     5341 gtgcttttct ttgctttcct ttcaggttgg ctgatggagc agtatataaa gcaattacca
     5401 gttagacaga aaatgatttc aaaggccaac caacattttt ttaaaaacaa aatgggaggg
     5461 gttaatggaa tatagaattg tcatatatat ttgtttattc gtgcaatgct aatatagtaa
     5521 cttggctgtc ctttgaattg tcactgtgct gagtggattt cctctagaac tctggattcc
     5581 atgagttggg cccaggccgt ggtagaataa taacagaaag aagataaatg ccacagatct
     5641 tagcactggg cttccttgaa ggacttaagt cagtttagaa gatgaaggaa gccgatggag
     5701 aaatgtaaag attagctttg gaagccgtcc tctagctatc gaacaatcaa gggaatgcac
     5761 ctctcagcta caaagaacag ccagacagct gggttttttt tttctttttc ttttataaat
     5821 gtttctgtgt tgtgtcaaaa tgatttctgg tgatttaaac taacagataa tcacagctgc
     5881 tgtctaaatc catagtgttt aaaaattaca aaatgaaaaa aaaaaaccac ttcattacct
     5941 gtgaagactg tgtctgtgtt tttaactatt tcttgtacaa atatatgaaa acttttatga
     6001 ggagactggt gccacgtagc tgaataatgg ggaaagggat ctttctgttc gtaaaaacct
     6061 tagcagtgtt accaactcta caatatatat atacaaataa ttaaagcgtt acaaagcgac
     6121 agctatgcta catttgtttt gtgtgaagct aaccggactt aacttcctga gtgcctggct
     6181 tattttgaaa catttttttc attgaccatt gataatgctg caaatcagaa atgtacatac
     6241 ttcatttaca acagggttct ttttatactt ttgtagattc tcatacatgt cacatacatg
     6301 gttgtcttta tgtaacttaa ttttttcatc cgcaggtgcc attttcataa taaacttctc
     6361 ttggatttgt tac
//
