LOCUS       XM_030246754            6216 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuronal PAS domain protein 3 (Npas3),
            transcript variant X36, mRNA.
ACCESSION   XM_030246754
VERSION     XM_030246754.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246754.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6216
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..6216
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 1669 long SRA reads, 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
     CDS             625..3117
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X35"
                     /protein_id="XP_030102614.1"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
                     /translation="MRDFANQGDPPWNLRMEGPPPNTSVKGIQMWKSELCMRKTPCEG
                     AQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEL
                     TGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVET
                     TSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVP
                     SQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVG
                     KRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNA
                     NEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKASESSETSDSESDSKDTSEDNENSK
                     SDEKGNQSENSEDPEPDRKKSGSACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFEHP
                     KAAEDGFGALGPMQIKVERYVESEADLRLQPCESLTSDSAKDSDSANEAGAQASSKHQ
                     KRKRRRKRQKGGSASRRRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPIN
                     FDNDSSIWNYPPNREISRNESPYSMTKPPTSEHFPSPQGQGGSSGGGGALHVAIPDSV
                     LTPPGADGTAGRKTQFSGTAPVPSDPLSPPLSASPRDKHPGGGAGSGGGGPGASNSLL
                     YTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGN
                     LLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPGGN
                     VFTTAEGLFSTLPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 tccgccgcgc acagtggccg cggctcacta atgggattgc aggctggtgc ctggctccgc
       61 tgctgccgcc gctcgcgccg ctgctgccgc cgccgcccga acccgagccc gagcccccgc
      121 cagcccgagc ccagagcagc cgcgcctggg gctccaagcc gcggcgatga tccgaatctt
      181 tccggatttc agcgtgcagg tgacggccgc ggcggccggc ggggcagccg ctggggtacc
      241 ggccggtgcg ggcatgggga gggccggcgc cgcggccaac ggcaccccgc agaacgtcca
      301 gggcatcacc tcctaccagc agcgatgatg aaatccagtg tcacatccat gccagaaatt
      361 taacagagaa taactgccca gcatcctctg cccaaccaat cagaatgtag gaaaatctac
      421 agatatgacg gaatctactg tgaatctacc taccagaatt tacaagcact gagaaaggag
      481 aaatccagag atgctgctcg atcccgccgg ggaaaagaaa attttgagtt ctatgaattg
      541 gccaagctgt tgcctcttcc tgccgccatc accagccagc tcgacaaggc atccatcatc
      601 cgacttacaa ttagttatct caagatgaga gactttgcca accaagggga tcctccatgg
      661 aacctgagga tggaaggccc tccaccaaac acctcagtaa aagggattca aatgtggaaa
      721 tctgaactct gcatgagaaa gacaccatgt gaaggtgcac aacgaaggcg gagccccagc
      781 gcactggcca ttgaagtatt tgaagcacat ttgggaagcc acattttgca gtccctggat
      841 ggcttcgtat ttgcactaaa tcaagaagga aaatttttgt acatttctga aaccgtctct
      901 atctacctag gcctctcaca agtggagctg acaggtagca gcgtctttga ctatgtccac
      961 cctggggacc acgtggagat ggcagagcag ctgggcatga agctcccgcc tgggcggggt
     1021 ctcctctcgc agggcaccac agaggacgcg gccagttcag catcttcctc ttctcagtca
     1081 gagacccctg agccagtgga gacgaccagc cctagtctgc taaccacgga caacaccctt
     1141 gaacggtcct ttttcatccg aatgaagtct actctgacca aacgtggagt ccacatcaag
     1201 tcatctgggt ataaggtgat tcacataaca ggccggcttc gcctcagagt gtcgctgtcc
     1261 cacgggagga ccgtccccag ccaaatcatg ggtctggtgg ttgtggctca cgccttgcct
     1321 ccccctacga tcaatgaagt cagaattgac tgccatatgt tcgtcactcg agtaaacatg
     1381 gatctcaata tcatttactg tgaaaatagg attagtgatt acatggatct gacccctgta
     1441 gacatcgtag ggaaaagatg ctaccacttc atccatgccg aagatgtaga aggcatcagg
     1501 cacagtcacc tggacttgct gaataagggt cagtgtgtga ccaagtacta ccgctggatg
     1561 cagaagaatg gaggctacat ctggatacag tctagtgcca ccatagctat taatgcgaag
     1621 aatgcaaatg agaagaacat catctgggtg aattatcttc ttagtaatcc ggagtacaag
     1681 gacacaccca tggacattgc gcaactcccg catttgccag agaaagcgtc agaatcctca
     1741 gagacatccg actctgagtc agactctaaa gacacctcag aggacaatga gaactccaag
     1801 tccgacgaga agggcaatca gtccgagaat agcgaagatc cggagcctga ccgcaagaag
     1861 tcaggcagcg catgcgacaa cgacatgaac tgcaacgacg atggccacag ctccagcaac
     1921 ccggacagcc gtgacagcga cgacagcttc gagcactcgg actttgaaca ccccaaggcg
     1981 gccgaggatg gcttcggcgc gctgggccct atgcagatca aagtggagcg ctacgtggag
     2041 agcgaggcgg acctgcgact gcagccctgc gagtcgctca cgtcggacag cgccaaggac
     2101 tcagacagcg cgaacgaggc gggcgctcag gcatccagca agcaccagaa gcgcaagcgg
     2161 cggcggaaac ggcagaaggg cggcagcgcc agtcgccgac gcctgtccag cgcgtccagc
     2221 ccaggcctgg acgccggtct ggtggagcct ccgcggctgc tgtcatcgcc gcacagcgcc
     2281 tctgtgctca agatcaagac agagatcgcc gagcccatca acttcgacaa cgacagcagc
     2341 atctggaact acccgcccaa ccgggagatc tccaggaacg aatccccgta cagcatgacc
     2401 aagcccccca cctccgagca cttcccgtcc ccgcagggcc agggaggcag cagcggtggc
     2461 gggggagcgc tgcacgtggc catccccgac tcggtcctca ccccaccggg cgccgatggc
     2521 acagctggcc gcaagactca gttcagcggc acagccccgg tgccctctga tccactgtcg
     2581 cccccgctct ctgcgtcccc gcgggacaag caccccgggg gcggggcggg gagtggcggg
     2641 ggtggccctg gtgcatccaa ctccttgctg tacactgggg acctggaggc cctgcagagg
     2701 ttgcaagcgg gcaacgtcgt gcttccgctg gtgcaccggg tgaccgggac cctggcagcc
     2761 accagcacag ccgcacagag ggtctacacc acgggcacta tccgctacgc acccgctgag
     2821 gtgaccctgg ccatgcaggg caacctgcta cccaacgcgc atgctgttaa cttcgtggac
     2881 gttaacagcc caggctttgg cctcgacccc aagacaccca tggagatgct ctaccaccac
     2941 gtgcaccgac tcaacatgtc aggaccattt ggcggcgccg tgagcgcggc cagcctcaca
     3001 cagatgccag gtggcaacgt gttcaccaca gccgagggac tcttctccac gctgcccttc
     3061 ccagtctaca gcaacggtat ccacgcggca cagactctgg agcgcaagga ggactgagcg
     3121 ggccccactc aggaggcatc gtcgttttcg tttagacctt tcattctagc actttgaatt
     3181 cgagctggtc agcgtcttct cgcaacacgg tggccccatc ccaccccctc tctttctttc
     3241 attagactta ttctttcttg taaagacatg tttatttttt gccttcagag ggtcagatga
     3301 ccggttgcct gccattttgt cttctaagat gtgtgttggg ttgtttgact ttcctttaca
     3361 tctttattaa gatgtcttta atgtgtatat gcctctgcca tagaatactc agtcttgtgg
     3421 tcaagagatt tctcaagtga caaccattgg gttttcttcc taaagatctt gatatgatca
     3481 agatggaaag agacacgcat aaacgattgt gccctgtttg actaagtcaa atgaaatggg
     3541 gtgggtgttt tgttttttgt ttttggtttt tttttttttt tcctgttcct aattcctttg
     3601 aaaatagggg aatagtattt tagaatttta tgcagaattt aattcttttt atgattaaga
     3661 ttttaagatt tttcttactt gcacacataa aaataatttg gtttcttaaa cttaatttct
     3721 ggcctgtgac tagaatgttt gtttttttgt ttttttttta aaaagtcgga ctaagtgtta
     3781 attactgaaa cattaactta atttctaaaa ccatggtgct atcatttatt aatctataat
     3841 gtcttcatac aaaatgcagc tcctgggctg gattttggaa gagaaaatgt gttctgtcct
     3901 ggtctggagt cccgttgcta cagtcagtct ccttggttag ttaagacaaa gccctcatta
     3961 acatttgctg caggacttaa aaatttttta cctcccaact aacaaacata gcctcacttt
     4021 caattgaatg ggtcagtaaa gccctattaa aaggggactt ttggacaact cggactgatt
     4081 tgaggaacag tttaagtaca tactgccatt tttgagattc ttttgtcctt agtcagtcta
     4141 actgaggctg gttttttgca acttcagtaa cacttcagag taaaagaaga aggagaaata
     4201 tttaacatgt tctttatttg gggtttttgt ttgtttttat ttcttgctaa aaaaaaatag
     4261 gtttgtatgg ggggtgctga tttgatagaa tttatttccc ttcaattctt atttgagttg
     4321 aaaccaacaa gtttttaaaa ctaaagaatg ggttaataag cttcagacag ataactacaa
     4381 ccgaaaaccg cacattcaat gaaaaaaaaa gagaaaaaaa aaagaaaaag aaaaagaaaa
     4441 aagagcctat tttgtcttcg ttgccagaaa tcagtgtggt gtcaaacact ccaaatgact
     4501 gtccagtgta gactcttccc ccacttcgtt tttggcagct gtttgttaag gcatctaatc
     4561 ccagatgtga aaactgtaat gtgtgcaacg tgtagtgtcc ttggctgtgg gtcccattgc
     4621 agtttctgtg tgtttctata tgcagtgtat gctaagctac tgtagtcgtt ttttgtcccc
     4681 gtcttctccg tgctctgtct ctagtggagt ggcacagttc cattcctgcg gtcctagtga
     4741 atcggtgact cttgggggtt agtgggtttg tgtggtggcc tttccctgtg acgtcaccca
     4801 tatgcttcta ttgtctgtgg atcctgtctt acttttcgaa atccctgccg ttgctttgct
     4861 gttgtatact ctccctgcct cccctgtctt tccctgtctg ccctttctct cctctgcttc
     4921 ccccttccct gataccccaa atctgtatca ttctcagaga taaaaagaaa aaagaaaaaa
     4981 aaagaaaaag aaaaaagact cttaactagc tcaaggttaa tggagccatc tttcccacaa
     5041 cggaattctg gatgtgactt tctctgtgga gtactacaca gagccctgaa gaataatgct
     5101 cagatatatt gaataaattg acgccatgca acctcagctg ttaacattcc cagagtccct
     5161 tgtgttctac ctataagcag tgggtgcttt tctttgcttt cctttcaggt tggctgatgg
     5221 agcagtatat aaagcaatta ccagttagac agaaaatgat ttcaaaggcc aaccaacatt
     5281 tttttaaaaa caaaatggga ggggttaatg gaatatagaa ttgtcatata tatttgttta
     5341 ttcgtgcaat gctaatatag taacttggct gtcctttgaa ttgtcactgt gctgagtgga
     5401 tttcctctag aactctggat tccatgagtt gggcccaggc cgtggtagaa taataacaga
     5461 aagaagataa atgccacaga tcttagcact gggcttcctt gaaggactta agtcagttta
     5521 gaagatgaag gaagccgatg gagaaatgta aagattagct ttggaagccg tcctctagct
     5581 atcgaacaat caagggaatg cacctctcag ctacaaagaa cagccagaca gctgggtttt
     5641 ttttttcttt ttcttttata aatgtttctg tgttgtgtca aaatgatttc tggtgattta
     5701 aactaacaga taatcacagc tgctgtctaa atccatagtg tttaaaaatt acaaaatgaa
     5761 aaaaaaaaac cacttcatta cctgtgaaga ctgtgtctgt gtttttaact atttcttgta
     5821 caaatatatg aaaactttta tgaggagact ggtgccacgt agctgaataa tggggaaagg
     5881 gatctttctg ttcgtaaaaa ccttagcagt gttaccaact ctacaatata tatatacaaa
     5941 taattaaagc gttacaaagc gacagctatg ctacatttgt tttgtgtgaa gctaaccgga
     6001 cttaacttcc tgagtgcctg gcttattttg aaacattttt ttcattgacc attgataatg
     6061 ctgcaaatca gaaatgtaca tacttcattt acaacagggt tctttttata cttttgtaga
     6121 ttctcataca tgtcacatac atggttgtct ttatgtaact taattttttc atccgcaggt
     6181 gccattttca taataaactt ctcttggatt tgttac
//
