LOCUS       XM_030246750            6464 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuronal PAS domain protein 3 (Npas3),
            transcript variant X25, mRNA.
ACCESSION   XM_030246750
VERSION     XM_030246750.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246750.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6464
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..6464
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 1726 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
     CDS             498..3365
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X25"
                     /protein_id="XP_030102610.1"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGK
                     ENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPN
                     TSVKGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGL
                     SQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETP
                     EPVETTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSH
                     GRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTP
                     VDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAI
                     NAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKASESSETSDSESDSKDTSGI
                     TAEDNENSKSDEKGNQSENSEDPEPDRKKSGSACDNDMNCNDDGHSSSNPDSRDSDDS
                     FEHSDFEHPKAAEDGFGALGPMQIKVERYVESEADLRLQPCESLTSDSAKDSDSANEA
                     GAQASSKHQKRKRRRKRQKGGSASRRRLSSASSPGLDAGLVEPPRLLSSPHSASVLKI
                     KTEIAEPINFDNDSSIWNYPPNREISRNESPYSMTKPPTSEHFPSPQGQGGSSGGGGA
                     LHVAIPDSVLTPPGADGTAGRKTQFSGTAPVPSDPLSPPLSASPRDKHPGGGAGSGGG
                     GPGASNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPA
                     EVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAA
                     SLTQMPGGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 tgtgtgtgtg tgtgtgtgtg tagaagaggg agggaaaacg caccctccac tgctcgttat
       61 tcccttgcac cggccaagcg ctcgccaagc ctcccggtgc atccttcctc cttcaccccc
      121 tcctcctctc agctgggctc gcgcggcgct gctggagcag ccagtgaaag caacatcctg
      181 gaaagagggg ggagcaacag tgccccccaa aagggagaaa aggccccacc ctgacacgtt
      241 ttgctgtttg caagtccctc gcacaccccc cgcacctcct cctcgccacc cccccccacc
      301 tcagcccgct gcgcgcacat caaagcgcct ctccgccgcg cacagtggcc gcggctcact
      361 aatgggattg caggctggtg cctggctccg ctgctgccgc cgctcgcgcc gctgctgccg
      421 ccgccgcccg aacccgagcc cgagcccccg ccagcccgag cccagagcag ccgcgcctgg
      481 ggctccaagc cgcggcgatg atccgaatct ttccggattt cagcgtgcag gtgacggccg
      541 cggcggccgg cggggcagcc gctggggtac cggccggtgc gggcatgggg agggccggcg
      601 ccgcggccaa cggcaccccg cagaacgtcc agggcatcac ctcctaccag cagcgaataa
      661 ctgcccagca tcctctgccc aaccaatcag aatgtaggaa aatctacaga tatgacggaa
      721 tctactgtga atctacctac cagaatttac aagcactgag aaaggagaaa tccagagatg
      781 ctgctcgatc ccgccgggga aaagaaaatt ttgagttcta tgaattggcc aagctgttgc
      841 ctcttcctgc cgccatcacc agccagctcg acaaggcatc catcatccga cttacaatta
      901 gttatctcaa gatgagagac tttgccaacc aaggggatcc tccatggaac ctgaggatgg
      961 aaggccctcc accaaacacc tcagtaaaag gtgcacaacg aaggcggagc cccagcgcac
     1021 tggccattga agtatttgaa gcacatttgg gaagccacat tttgcagtcc ctggatggct
     1081 tcgtatttgc actaaatcaa gaaggaaaat ttttgtacat ttctgaaacc gtctctatct
     1141 acctaggcct ctcacaagtg gagctgacag gtagcagcgt ctttgactat gtccaccctg
     1201 gggaccacgt ggagatggca gagcagctgg gcatgaagct cccgcctggg cggggtctcc
     1261 tctcgcaggg caccacagag gacgcggcca gttcagcatc ttcctcttct cagtcagaga
     1321 cccctgagcc agtggagacg accagcccta gtctgctaac cacggacaac acccttgaac
     1381 ggtccttttt catccgaatg aagtctactc tgaccaaacg tggagtccac atcaagtcat
     1441 ctgggtataa ggtgattcac ataacaggcc ggcttcgcct cagagtgtcg ctgtcccacg
     1501 ggaggaccgt ccccagccaa atcatgggtc tggtggttgt ggctcacgcc ttgcctcccc
     1561 ctacgatcaa tgaagtcaga attgactgcc atatgttcgt cactcgagta aacatggatc
     1621 tcaatatcat ttactgtgaa aataggatta gtgattacat ggatctgacc cctgtagaca
     1681 tcgtagggaa aagatgctac cacttcatcc atgccgaaga tgtagaaggc atcaggcaca
     1741 gtcacctgga cttgctgaat aagggtcagt gtgtgaccaa gtactaccgc tggatgcaga
     1801 agaatggagg ctacatctgg atacagtcta gtgccaccat agctattaat gcgaagaatg
     1861 caaatgagaa gaacatcatc tgggtgaatt atcttcttag taatccggag tacaaggaca
     1921 cacccatgga cattgcgcaa ctcccgcatt tgccagagaa agcgtcagaa tcctcagaga
     1981 catccgactc tgagtcagac tctaaagaca cctcaggtat tacagcagag gacaatgaga
     2041 actccaagtc cgacgagaag ggcaatcagt ccgagaatag cgaagatccg gagcctgacc
     2101 gcaagaagtc aggcagcgca tgcgacaacg acatgaactg caacgacgat ggccacagct
     2161 ccagcaaccc ggacagccgt gacagcgacg acagcttcga gcactcggac tttgaacacc
     2221 ccaaggcggc cgaggatggc ttcggcgcgc tgggccctat gcagatcaaa gtggagcgct
     2281 acgtggagag cgaggcggac ctgcgactgc agccctgcga gtcgctcacg tcggacagcg
     2341 ccaaggactc agacagcgcg aacgaggcgg gcgctcaggc atccagcaag caccagaagc
     2401 gcaagcggcg gcggaaacgg cagaagggcg gcagcgccag tcgccgacgc ctgtccagcg
     2461 cgtccagccc aggcctggac gccggtctgg tggagcctcc gcggctgctg tcatcgccgc
     2521 acagcgcctc tgtgctcaag atcaagacag agatcgccga gcccatcaac ttcgacaacg
     2581 acagcagcat ctggaactac ccgcccaacc gggagatctc caggaacgaa tccccgtaca
     2641 gcatgaccaa gccccccacc tccgagcact tcccgtcccc gcagggccag ggaggcagca
     2701 gcggtggcgg gggagcgctg cacgtggcca tccccgactc ggtcctcacc ccaccgggcg
     2761 ccgatggcac agctggccgc aagactcagt tcagcggcac agccccggtg ccctctgatc
     2821 cactgtcgcc cccgctctct gcgtccccgc gggacaagca ccccgggggc ggggcgggga
     2881 gtggcggggg tggccctggt gcatccaact ccttgctgta cactggggac ctggaggccc
     2941 tgcagaggtt gcaagcgggc aacgtcgtgc ttccgctggt gcaccgggtg accgggaccc
     3001 tggcagccac cagcacagcc gcacagaggg tctacaccac gggcactatc cgctacgcac
     3061 ccgctgaggt gaccctggcc atgcagggca acctgctacc caacgcgcat gctgttaact
     3121 tcgtggacgt taacagccca ggctttggcc tcgaccccaa gacacccatg gagatgctct
     3181 accaccacgt gcaccgactc aacatgtcag gaccatttgg cggcgccgtg agcgcggcca
     3241 gcctcacaca gatgccaggt ggcaacgtgt tcaccacagc cgagggactc ttctccacgc
     3301 tgcccttccc agtctacagc aacggtatcc acgcggcaca gactctggag cgcaaggagg
     3361 actgagcggg ccccactcag gaggcatcgt cgttttcgtt tagacctttc attctagcac
     3421 tttgaattcg agctggtcag cgtcttctcg caacacggtg gccccatccc accccctctc
     3481 tttctttcat tagacttatt ctttcttgta aagacatgtt tattttttgc cttcagaggg
     3541 tcagatgacc ggttgcctgc cattttgtct tctaagatgt gtgttgggtt gtttgacttt
     3601 cctttacatc tttattaaga tgtctttaat gtgtatatgc ctctgccata gaatactcag
     3661 tcttgtggtc aagagatttc tcaagtgaca accattgggt tttcttccta aagatcttga
     3721 tatgatcaag atggaaagag acacgcataa acgattgtgc cctgtttgac taagtcaaat
     3781 gaaatggggt gggtgttttg ttttttgttt ttggtttttt tttttttttc ctgttcctaa
     3841 ttcctttgaa aataggggaa tagtatttta gaattttatg cagaatttaa ttctttttat
     3901 gattaagatt ttaagatttt tcttacttgc acacataaaa ataatttggt ttcttaaact
     3961 taatttctgg cctgtgacta gaatgtttgt ttttttgttt tttttttaaa aagtcggact
     4021 aagtgttaat tactgaaaca ttaacttaat ttctaaaacc atggtgctat catttattaa
     4081 tctataatgt cttcatacaa aatgcagctc ctgggctgga ttttggaaga gaaaatgtgt
     4141 tctgtcctgg tctggagtcc cgttgctaca gtcagtctcc ttggttagtt aagacaaagc
     4201 cctcattaac atttgctgca ggacttaaaa attttttacc tcccaactaa caaacatagc
     4261 ctcactttca attgaatggg tcagtaaagc cctattaaaa ggggactttt ggacaactcg
     4321 gactgatttg aggaacagtt taagtacata ctgccatttt tgagattctt ttgtccttag
     4381 tcagtctaac tgaggctggt tttttgcaac ttcagtaaca cttcagagta aaagaagaag
     4441 gagaaatatt taacatgttc tttatttggg gtttttgttt gtttttattt cttgctaaaa
     4501 aaaaataggt ttgtatgggg ggtgctgatt tgatagaatt tatttccctt caattcttat
     4561 ttgagttgaa accaacaagt ttttaaaact aaagaatggg ttaataagct tcagacagat
     4621 aactacaacc gaaaaccgca cattcaatga aaaaaaaaga gaaaaaaaaa agaaaaagaa
     4681 aaagaaaaaa gagcctattt tgtcttcgtt gccagaaatc agtgtggtgt caaacactcc
     4741 aaatgactgt ccagtgtaga ctcttccccc acttcgtttt tggcagctgt ttgttaaggc
     4801 atctaatccc agatgtgaaa actgtaatgt gtgcaacgtg tagtgtcctt ggctgtgggt
     4861 cccattgcag tttctgtgtg tttctatatg cagtgtatgc taagctactg tagtcgtttt
     4921 ttgtccccgt cttctccgtg ctctgtctct agtggagtgg cacagttcca ttcctgcggt
     4981 cctagtgaat cggtgactct tgggggttag tgggtttgtg tggtggcctt tccctgtgac
     5041 gtcacccata tgcttctatt gtctgtggat cctgtcttac ttttcgaaat ccctgccgtt
     5101 gctttgctgt tgtatactct ccctgcctcc cctgtctttc cctgtctgcc ctttctctcc
     5161 tctgcttccc ccttccctga taccccaaat ctgtatcatt ctcagagata aaaagaaaaa
     5221 agaaaaaaaa agaaaaagaa aaaagactct taactagctc aaggttaatg gagccatctt
     5281 tcccacaacg gaattctgga tgtgactttc tctgtggagt actacacaga gccctgaaga
     5341 ataatgctca gatatattga ataaattgac gccatgcaac ctcagctgtt aacattccca
     5401 gagtcccttg tgttctacct ataagcagtg ggtgcttttc tttgctttcc tttcaggttg
     5461 gctgatggag cagtatataa agcaattacc agttagacag aaaatgattt caaaggccaa
     5521 ccaacatttt tttaaaaaca aaatgggagg ggttaatgga atatagaatt gtcatatata
     5581 tttgtttatt cgtgcaatgc taatatagta acttggctgt cctttgaatt gtcactgtgc
     5641 tgagtggatt tcctctagaa ctctggattc catgagttgg gcccaggccg tggtagaata
     5701 ataacagaaa gaagataaat gccacagatc ttagcactgg gcttccttga aggacttaag
     5761 tcagtttaga agatgaagga agccgatgga gaaatgtaaa gattagcttt ggaagccgtc
     5821 ctctagctat cgaacaatca agggaatgca cctctcagct acaaagaaca gccagacagc
     5881 tgggtttttt ttttcttttt cttttataaa tgtttctgtg ttgtgtcaaa atgatttctg
     5941 gtgatttaaa ctaacagata atcacagctg ctgtctaaat ccatagtgtt taaaaattac
     6001 aaaatgaaaa aaaaaaacca cttcattacc tgtgaagact gtgtctgtgt ttttaactat
     6061 ttcttgtaca aatatatgaa aacttttatg aggagactgg tgccacgtag ctgaataatg
     6121 gggaaaggga tctttctgtt cgtaaaaacc ttagcagtgt taccaactct acaatatata
     6181 tatacaaata attaaagcgt tacaaagcga cagctatgct acatttgttt tgtgtgaagc
     6241 taaccggact taacttcctg agtgcctggc ttattttgaa acattttttt cattgaccat
     6301 tgataatgct gcaaatcaga aatgtacata cttcatttac aacagggttc tttttatact
     6361 tttgtagatt ctcatacatg tcacatacat ggttgtcttt atgtaactta attttttcat
     6421 ccgcaggtgc cattttcata ataaacttct cttggatttg ttac
//
