LOCUS       XM_030246748            6517 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuronal PAS domain protein 3 (Npas3),
            transcript variant X22, mRNA.
ACCESSION   XM_030246748
VERSION     XM_030246748.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246748.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6517
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..6517
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 1686 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
     CDS             500..3418
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X22"
                     /protein_id="XP_030102608.1"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGK
                     ENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPN
                     TSVKGIQMWKSELCMRKTPCEGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQ
                     EGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGT
                     TEDAASSASSSSQSETPEPVETTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGY
                     KVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDL
                     NIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWM
                     QKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKASE
                     SSETSDSESDSKDTSGITAEDNENSKSDEKGNQSENSEDPEPDRKKSGSACDNDMNCN
                     DDGHSSSNPDSRDSDDSFEHSDFEHPKAAEDGFGALGPMQIKVERYVESEADLRLQPC
                     ESLTSDSAKDSDSANEAGAQASSKHQKRKRRRKRQKGGSASRRRLSSASSPGLDAGLV
                     EPPRLLSSPHSASVLKIKTEIAEPINFDNDSSIWNYPPNREISRNESPYSMTKPPTSE
                     HFPSPQGQGGSSGGGGALHVAIPDSVLTPPGADGTAGRKTQFSGTAPVPSDPLSPPLS
                     ASPRDKHPGGGAGSGGGGPGASNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATS
                     TAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHH
                     VHRLNMSGPFGGAVSAASLTQMPGGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED
                     "
ORIGIN      
        1 tgtgtgtgtg tgtgtgtgtg tgtagaagag ggagggaaaa cgcaccctcc actgctcgtt
       61 attcccttgc accggccaag cgctcgccaa gcctcccggt gcatccttcc tccttcaccc
      121 cctcctcctc tcagctgggc tcgcgcggcg ctgctggagc agccagtgaa agcaacatcc
      181 tggaaagagg ggggagcaac agtgcccccc aaaagggaga aaaggcccca ccctgacacg
      241 ttttgctgtt tgcaagtccc tcgcacaccc cccgcacctc ctcctcgcca ccccccccca
      301 cctcagcccg ctgcgcgcac atcaaagcgc ctctccgccg cgcacagtgg ccgcggctca
      361 ctaatgggat tgcaggctgg tgcctggctc cgctgctgcc gccgctcgcg ccgctgctgc
      421 cgccgccgcc cgaacccgag cccgagcccc cgccagcccg agcccagagc agccgcgcct
      481 ggggctccaa gccgcggcga tgatccgaat ctttccggat ttcagcgtgc aggtgacggc
      541 cgcggcggcc ggcggggcag ccgctggggt accggccggt gcgggcatgg ggagggccgg
      601 cgccgcggcc aacggcaccc cgcagaacgt ccagggcatc acctcctacc agcagcgaat
      661 aactgcccag catcctctgc ccaaccaatc agaatgtagg aaaatctaca gatatgacgg
      721 aatctactgt gaatctacct accagaattt acaagcactg agaaaggaga aatccagaga
      781 tgctgctcga tcccgccggg gaaaagaaaa ttttgagttc tatgaattgg ccaagctgtt
      841 gcctcttcct gccgccatca ccagccagct cgacaaggca tccatcatcc gacttacaat
      901 tagttatctc aagatgagag actttgccaa ccaaggggat cctccatgga acctgaggat
      961 ggaaggccct ccaccaaaca cctcagtaaa agggattcaa atgtggaaat ctgaactctg
     1021 catgagaaag acaccatgtg aaggtgcaca acgaaggcgg agccccagcg cactggccat
     1081 tgaagtattt gaagcacatt tgggaagcca cattttgcag tccctggatg gcttcgtatt
     1141 tgcactaaat caagaaggaa aatttttgta catttctgaa accgtctcta tctacctagg
     1201 cctctcacaa gtggagctga caggtagcag cgtctttgac tatgtccacc ctggggacca
     1261 cgtggagatg gcagagcagc tgggcatgaa gctcccgcct gggcggggtc tcctctcgca
     1321 gggcaccaca gaggacgcgg ccagttcagc atcttcctct tctcagtcag agacccctga
     1381 gccagtggag acgaccagcc ctagtctgct aaccacggac aacacccttg aacggtcctt
     1441 tttcatccga atgaagtcta ctctgaccaa acgtggagtc cacatcaagt catctgggta
     1501 taaggtgatt cacataacag gccggcttcg cctcagagtg tcgctgtccc acgggaggac
     1561 cgtccccagc caaatcatgg gtctggtggt tgtggctcac gccttgcctc cccctacgat
     1621 caatgaagtc agaattgact gccatatgtt cgtcactcga gtaaacatgg atctcaatat
     1681 catttactgt gaaaatagga ttagtgatta catggatctg acccctgtag acatcgtagg
     1741 gaaaagatgc taccacttca tccatgccga agatgtagaa ggcatcaggc acagtcacct
     1801 ggacttgctg aataagggtc agtgtgtgac caagtactac cgctggatgc agaagaatgg
     1861 aggctacatc tggatacagt ctagtgccac catagctatt aatgcgaaga atgcaaatga
     1921 gaagaacatc atctgggtga attatcttct tagtaatccg gagtacaagg acacacccat
     1981 ggacattgcg caactcccgc atttgccaga gaaagcgtca gaatcctcag agacatccga
     2041 ctctgagtca gactctaaag acacctcagg tattacagca gaggacaatg agaactccaa
     2101 gtccgacgag aagggcaatc agtccgagaa tagcgaagat ccggagcctg accgcaagaa
     2161 gtcaggcagc gcatgcgaca acgacatgaa ctgcaacgac gatggccaca gctccagcaa
     2221 cccggacagc cgtgacagcg acgacagctt cgagcactcg gactttgaac accccaaggc
     2281 ggccgaggat ggcttcggcg cgctgggccc tatgcagatc aaagtggagc gctacgtgga
     2341 gagcgaggcg gacctgcgac tgcagccctg cgagtcgctc acgtcggaca gcgccaagga
     2401 ctcagacagc gcgaacgagg cgggcgctca ggcatccagc aagcaccaga agcgcaagcg
     2461 gcggcggaaa cggcagaagg gcggcagcgc cagtcgccga cgcctgtcca gcgcgtccag
     2521 cccaggcctg gacgccggtc tggtggagcc tccgcggctg ctgtcatcgc cgcacagcgc
     2581 ctctgtgctc aagatcaaga cagagatcgc cgagcccatc aacttcgaca acgacagcag
     2641 catctggaac tacccgccca accgggagat ctccaggaac gaatccccgt acagcatgac
     2701 caagcccccc acctccgagc acttcccgtc cccgcagggc cagggaggca gcagcggtgg
     2761 cgggggagcg ctgcacgtgg ccatccccga ctcggtcctc accccaccgg gcgccgatgg
     2821 cacagctggc cgcaagactc agttcagcgg cacagccccg gtgccctctg atccactgtc
     2881 gcccccgctc tctgcgtccc cgcgggacaa gcaccccggg ggcggggcgg ggagtggcgg
     2941 gggtggccct ggtgcatcca actccttgct gtacactggg gacctggagg ccctgcagag
     3001 gttgcaagcg ggcaacgtcg tgcttccgct ggtgcaccgg gtgaccggga ccctggcagc
     3061 caccagcaca gccgcacaga gggtctacac cacgggcact atccgctacg cacccgctga
     3121 ggtgaccctg gccatgcagg gcaacctgct acccaacgcg catgctgtta acttcgtgga
     3181 cgttaacagc ccaggctttg gcctcgaccc caagacaccc atggagatgc tctaccacca
     3241 cgtgcaccga ctcaacatgt caggaccatt tggcggcgcc gtgagcgcgg ccagcctcac
     3301 acagatgcca ggtggcaacg tgttcaccac agccgaggga ctcttctcca cgctgccctt
     3361 cccagtctac agcaacggta tccacgcggc acagactctg gagcgcaagg aggactgagc
     3421 gggccccact caggaggcat cgtcgttttc gtttagacct ttcattctag cactttgaat
     3481 tcgagctggt cagcgtcttc tcgcaacacg gtggccccat cccaccccct ctctttcttt
     3541 cattagactt attctttctt gtaaagacat gtttattttt tgccttcaga gggtcagatg
     3601 accggttgcc tgccattttg tcttctaaga tgtgtgttgg gttgtttgac tttcctttac
     3661 atctttatta agatgtcttt aatgtgtata tgcctctgcc atagaatact cagtcttgtg
     3721 gtcaagagat ttctcaagtg acaaccattg ggttttcttc ctaaagatct tgatatgatc
     3781 aagatggaaa gagacacgca taaacgattg tgccctgttt gactaagtca aatgaaatgg
     3841 ggtgggtgtt ttgttttttg tttttggttt tttttttttt ttcctgttcc taattccttt
     3901 gaaaataggg gaatagtatt ttagaatttt atgcagaatt taattctttt tatgattaag
     3961 attttaagat ttttcttact tgcacacata aaaataattt ggtttcttaa acttaatttc
     4021 tggcctgtga ctagaatgtt tgtttttttg tttttttttt aaaaagtcgg actaagtgtt
     4081 aattactgaa acattaactt aatttctaaa accatggtgc tatcatttat taatctataa
     4141 tgtcttcata caaaatgcag ctcctgggct ggattttgga agagaaaatg tgttctgtcc
     4201 tggtctggag tcccgttgct acagtcagtc tccttggtta gttaagacaa agccctcatt
     4261 aacatttgct gcaggactta aaaatttttt acctcccaac taacaaacat agcctcactt
     4321 tcaattgaat gggtcagtaa agccctatta aaaggggact tttggacaac tcggactgat
     4381 ttgaggaaca gtttaagtac atactgccat ttttgagatt cttttgtcct tagtcagtct
     4441 aactgaggct ggttttttgc aacttcagta acacttcaga gtaaaagaag aaggagaaat
     4501 atttaacatg ttctttattt ggggtttttg tttgttttta tttcttgcta aaaaaaaata
     4561 ggtttgtatg gggggtgctg atttgataga atttatttcc cttcaattct tatttgagtt
     4621 gaaaccaaca agtttttaaa actaaagaat gggttaataa gcttcagaca gataactaca
     4681 accgaaaacc gcacattcaa tgaaaaaaaa agagaaaaaa aaaagaaaaa gaaaaagaaa
     4741 aaagagccta ttttgtcttc gttgccagaa atcagtgtgg tgtcaaacac tccaaatgac
     4801 tgtccagtgt agactcttcc cccacttcgt ttttggcagc tgtttgttaa ggcatctaat
     4861 cccagatgtg aaaactgtaa tgtgtgcaac gtgtagtgtc cttggctgtg ggtcccattg
     4921 cagtttctgt gtgtttctat atgcagtgta tgctaagcta ctgtagtcgt tttttgtccc
     4981 cgtcttctcc gtgctctgtc tctagtggag tggcacagtt ccattcctgc ggtcctagtg
     5041 aatcggtgac tcttgggggt tagtgggttt gtgtggtggc ctttccctgt gacgtcaccc
     5101 atatgcttct attgtctgtg gatcctgtct tacttttcga aatccctgcc gttgctttgc
     5161 tgttgtatac tctccctgcc tcccctgtct ttccctgtct gccctttctc tcctctgctt
     5221 cccccttccc tgatacccca aatctgtatc attctcagag ataaaaagaa aaaagaaaaa
     5281 aaaagaaaaa gaaaaaagac tcttaactag ctcaaggtta atggagccat ctttcccaca
     5341 acggaattct ggatgtgact ttctctgtgg agtactacac agagccctga agaataatgc
     5401 tcagatatat tgaataaatt gacgccatgc aacctcagct gttaacattc ccagagtccc
     5461 ttgtgttcta cctataagca gtgggtgctt ttctttgctt tcctttcagg ttggctgatg
     5521 gagcagtata taaagcaatt accagttaga cagaaaatga tttcaaaggc caaccaacat
     5581 ttttttaaaa acaaaatggg aggggttaat ggaatataga attgtcatat atatttgttt
     5641 attcgtgcaa tgctaatata gtaacttggc tgtcctttga attgtcactg tgctgagtgg
     5701 atttcctcta gaactctgga ttccatgagt tgggcccagg ccgtggtaga ataataacag
     5761 aaagaagata aatgccacag atcttagcac tgggcttcct tgaaggactt aagtcagttt
     5821 agaagatgaa ggaagccgat ggagaaatgt aaagattagc tttggaagcc gtcctctagc
     5881 tatcgaacaa tcaagggaat gcacctctca gctacaaaga acagccagac agctgggttt
     5941 tttttttctt tttcttttat aaatgtttct gtgttgtgtc aaaatgattt ctggtgattt
     6001 aaactaacag ataatcacag ctgctgtcta aatccatagt gtttaaaaat tacaaaatga
     6061 aaaaaaaaaa ccacttcatt acctgtgaag actgtgtctg tgtttttaac tatttcttgt
     6121 acaaatatat gaaaactttt atgaggagac tggtgccacg tagctgaata atggggaaag
     6181 ggatctttct gttcgtaaaa accttagcag tgttaccaac tctacaatat atatatacaa
     6241 ataattaaag cgttacaaag cgacagctat gctacatttg ttttgtgtga agctaaccgg
     6301 acttaacttc ctgagtgcct ggcttatttt gaaacatttt tttcattgac cattgataat
     6361 gctgcaaatc agaaatgtac atacttcatt tacaacaggg ttctttttat acttttgtag
     6421 attctcatac atgtcacata catggttgtc tttatgtaac ttaatttttt catccgcagg
     6481 tgccattttc ataataaact tctcttggat ttgttac
//
