LOCUS       XM_006515942            6432 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuronal PAS domain protein 3 (Npas3),
            transcript variant X27, mRNA.
ACCESSION   XM_006515942
VERSION     XM_006515942.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006515942.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6432
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..6432
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 1663 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
     CDS             499..3333
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X27"
                     /protein_id="XP_006516005.1"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
                     /translation="MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGAAANGTPQNV
                     QGITSYQQRLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRL
                     TISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGIQMWKSELCMRKTPCEVIGAQRRRS
                     PSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVF
                     DYVHPGDHVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLL
                     TTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGL
                     VVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHF
                     IHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNII
                     WVNYLLSNPEYKDTPMDIAQLPHLPEKASESSETSDSESDSKDTSGITAEDNENSKSD
                     EKGNQSENSEDPEPDRKKSGSACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFEHPKA
                     AEDGFGALGPMQIKVERYVESEADLRLQPCESLTSDSAKDSDSANEAGAQASSKHQKR
                     KRRRKRQKGGSASRRRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPINFD
                     NDSSIWNYPPNREISRNESPYSMTKPPTSEHFPSPQGQGGSSGGGGALHVAIPDSVLT
                     PPGADGTAGRKTQFSGTAPVPSDPLSPPLSASPRDKHPGGGAGSGGGGPGASNSLLYT
                     GDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLL
                     PNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPGGNVF
                     TTAEGLFSTLPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 gtgtgtgtgt gtgtgtgtgt gtagaagagg gagggaaaac gcaccctcca ctgctcgtta
       61 ttcccttgca ccggccaagc gctcgccaag cctcccggtg catccttcct ccttcacccc
      121 ctcctcctct cagctgggct cgcgcggcgc tgctggagca gccagtgaaa gcaacatcct
      181 ggaaagaggg gggagcaaca gtgcccccca aaagggagaa aaggccccac cctgacacgt
      241 tttgctgttt gcaagtccct cgcacacccc ccgcacctcc tcctcgccac ccccccccac
      301 ctcagcccgc tgcgcgcaca tcaaagcgcc tctccgccgc gcacagtggc cgcggctcac
      361 taatgggatt gcaggctggt gcctggctcc gctgctgccg ccgctcgcgc cgctgctgcc
      421 gccgccgccc gaacccgagc ccgagccccc gccagcccga gcccagagca gccgcgcctg
      481 gggctccaag ccgcggcgat gatccgaatc tttccggatt tcagcgtgca ggtgacggcc
      541 gcggcggccg gcggggcagc cgctggggta ccggccggtg cgggcatggg gagggccggc
      601 gccgcggcca acggcacccc gcagaacgtc cagggcatca cctcctacca gcagcgttta
      661 caagcactga gaaaggagaa atccagagat gctgctcgat cccgccgggg aaaagaaaat
      721 tttgagttct atgaattggc caagctgttg cctcttcctg ccgccatcac cagccagctc
      781 gacaaggcat ccatcatccg acttacaatt agttatctca agatgagaga ctttgccaac
      841 caaggggatc ctccatggaa cctgaggatg gaaggccctc caccaaacac ctcagtaaaa
      901 gggattcaaa tgtggaaatc tgaactctgc atgagaaaga caccatgtga agttataggt
      961 gcacaacgaa ggcggagccc cagcgcactg gccattgaag tatttgaagc acatttggga
     1021 agccacattt tgcagtccct ggatggcttc gtatttgcac taaatcaaga aggaaaattt
     1081 ttgtacattt ctgaaaccgt ctctatctac ctaggcctct cacaagtgga gctgacaggt
     1141 agcagcgtct ttgactatgt ccaccctggg gaccacgtgg agatggcaga gcagctgggc
     1201 atgaagctcc cgcctgggcg gggtctcctc tcgcagggca ccacagagga cgcggccagt
     1261 tcagcatctt cctcttctca gtcagagacc cctgagccag tggagacgac cagccctagt
     1321 ctgctaacca cggacaacac ccttgaacgg tcctttttca tccgaatgaa gtctactctg
     1381 accaaacgtg gagtccacat caagtcatct gggtataagg tgattcacat aacaggccgg
     1441 cttcgcctca gagtgtcgct gtcccacggg aggaccgtcc ccagccaaat catgggtctg
     1501 gtggttgtgg ctcacgcctt gcctccccct acgatcaatg aagtcagaat tgactgccat
     1561 atgttcgtca ctcgagtaaa catggatctc aatatcattt actgtgaaaa taggattagt
     1621 gattacatgg atctgacccc tgtagacatc gtagggaaaa gatgctacca cttcatccat
     1681 gccgaagatg tagaaggcat caggcacagt cacctggact tgctgaataa gggtcagtgt
     1741 gtgaccaagt actaccgctg gatgcagaag aatggaggct acatctggat acagtctagt
     1801 gccaccatag ctattaatgc gaagaatgca aatgagaaga acatcatctg ggtgaattat
     1861 cttcttagta atccggagta caaggacaca cccatggaca ttgcgcaact cccgcatttg
     1921 ccagagaaag cgtcagaatc ctcagagaca tccgactctg agtcagactc taaagacacc
     1981 tcaggtatta cagcagagga caatgagaac tccaagtccg acgagaaggg caatcagtcc
     2041 gagaatagcg aagatccgga gcctgaccgc aagaagtcag gcagcgcatg cgacaacgac
     2101 atgaactgca acgacgatgg ccacagctcc agcaacccgg acagccgtga cagcgacgac
     2161 agcttcgagc actcggactt tgaacacccc aaggcggccg aggatggctt cggcgcgctg
     2221 ggccctatgc agatcaaagt ggagcgctac gtggagagcg aggcggacct gcgactgcag
     2281 ccctgcgagt cgctcacgtc ggacagcgcc aaggactcag acagcgcgaa cgaggcgggc
     2341 gctcaggcat ccagcaagca ccagaagcgc aagcggcggc ggaaacggca gaagggcggc
     2401 agcgccagtc gccgacgcct gtccagcgcg tccagcccag gcctggacgc cggtctggtg
     2461 gagcctccgc ggctgctgtc atcgccgcac agcgcctctg tgctcaagat caagacagag
     2521 atcgccgagc ccatcaactt cgacaacgac agcagcatct ggaactaccc gcccaaccgg
     2581 gagatctcca ggaacgaatc cccgtacagc atgaccaagc cccccacctc cgagcacttc
     2641 ccgtccccgc agggccaggg aggcagcagc ggtggcgggg gagcgctgca cgtggccatc
     2701 cccgactcgg tcctcacccc accgggcgcc gatggcacag ctggccgcaa gactcagttc
     2761 agcggcacag ccccggtgcc ctctgatcca ctgtcgcccc cgctctctgc gtccccgcgg
     2821 gacaagcacc ccgggggcgg ggcggggagt ggcgggggtg gccctggtgc atccaactcc
     2881 ttgctgtaca ctggggacct ggaggccctg cagaggttgc aagcgggcaa cgtcgtgctt
     2941 ccgctggtgc accgggtgac cgggaccctg gcagccacca gcacagccgc acagagggtc
     3001 tacaccacgg gcactatccg ctacgcaccc gctgaggtga ccctggccat gcagggcaac
     3061 ctgctaccca acgcgcatgc tgttaacttc gtggacgtta acagcccagg ctttggcctc
     3121 gaccccaaga cacccatgga gatgctctac caccacgtgc accgactcaa catgtcagga
     3181 ccatttggcg gcgccgtgag cgcggccagc ctcacacaga tgccaggtgg caacgtgttc
     3241 accacagccg agggactctt ctccacgctg cccttcccag tctacagcaa cggtatccac
     3301 gcggcacaga ctctggagcg caaggaggac tgagcgggcc ccactcagga ggcatcgtcg
     3361 ttttcgttta gacctttcat tctagcactt tgaattcgag ctggtcagcg tcttctcgca
     3421 acacggtggc cccatcccac cccctctctt tctttcatta gacttattct ttcttgtaaa
     3481 gacatgttta ttttttgcct tcagagggtc agatgaccgg ttgcctgcca ttttgtcttc
     3541 taagatgtgt gttgggttgt ttgactttcc tttacatctt tattaagatg tctttaatgt
     3601 gtatatgcct ctgccataga atactcagtc ttgtggtcaa gagatttctc aagtgacaac
     3661 cattgggttt tcttcctaaa gatcttgata tgatcaagat ggaaagagac acgcataaac
     3721 gattgtgccc tgtttgacta agtcaaatga aatggggtgg gtgttttgtt ttttgttttt
     3781 ggtttttttt tttttttcct gttcctaatt cctttgaaaa taggggaata gtattttaga
     3841 attttatgca gaatttaatt ctttttatga ttaagatttt aagatttttc ttacttgcac
     3901 acataaaaat aatttggttt cttaaactta atttctggcc tgtgactaga atgtttgttt
     3961 ttttgttttt tttttaaaaa gtcggactaa gtgttaatta ctgaaacatt aacttaattt
     4021 ctaaaaccat ggtgctatca tttattaatc tataatgtct tcatacaaaa tgcagctcct
     4081 gggctggatt ttggaagaga aaatgtgttc tgtcctggtc tggagtcccg ttgctacagt
     4141 cagtctcctt ggttagttaa gacaaagccc tcattaacat ttgctgcagg acttaaaaat
     4201 tttttacctc ccaactaaca aacatagcct cactttcaat tgaatgggtc agtaaagccc
     4261 tattaaaagg ggacttttgg acaactcgga ctgatttgag gaacagttta agtacatact
     4321 gccatttttg agattctttt gtccttagtc agtctaactg aggctggttt tttgcaactt
     4381 cagtaacact tcagagtaaa agaagaagga gaaatattta acatgttctt tatttggggt
     4441 ttttgtttgt ttttatttct tgctaaaaaa aaataggttt gtatgggggg tgctgatttg
     4501 atagaattta tttcccttca attcttattt gagttgaaac caacaagttt ttaaaactaa
     4561 agaatgggtt aataagcttc agacagataa ctacaaccga aaaccgcaca ttcaatgaaa
     4621 aaaaaagaga aaaaaaaaag aaaaagaaaa agaaaaaaga gcctattttg tcttcgttgc
     4681 cagaaatcag tgtggtgtca aacactccaa atgactgtcc agtgtagact cttcccccac
     4741 ttcgtttttg gcagctgttt gttaaggcat ctaatcccag atgtgaaaac tgtaatgtgt
     4801 gcaacgtgta gtgtccttgg ctgtgggtcc cattgcagtt tctgtgtgtt tctatatgca
     4861 gtgtatgcta agctactgta gtcgtttttt gtccccgtct tctccgtgct ctgtctctag
     4921 tggagtggca cagttccatt cctgcggtcc tagtgaatcg gtgactcttg ggggttagtg
     4981 ggtttgtgtg gtggcctttc cctgtgacgt cacccatatg cttctattgt ctgtggatcc
     5041 tgtcttactt ttcgaaatcc ctgccgttgc tttgctgttg tatactctcc ctgcctcccc
     5101 tgtctttccc tgtctgccct ttctctcctc tgcttccccc ttccctgata ccccaaatct
     5161 gtatcattct cagagataaa aagaaaaaag aaaaaaaaag aaaaagaaaa aagactctta
     5221 actagctcaa ggttaatgga gccatctttc ccacaacgga attctggatg tgactttctc
     5281 tgtggagtac tacacagagc cctgaagaat aatgctcaga tatattgaat aaattgacgc
     5341 catgcaacct cagctgttaa cattcccaga gtcccttgtg ttctacctat aagcagtggg
     5401 tgcttttctt tgctttcctt tcaggttggc tgatggagca gtatataaag caattaccag
     5461 ttagacagaa aatgatttca aaggccaacc aacatttttt taaaaacaaa atgggagggg
     5521 ttaatggaat atagaattgt catatatatt tgtttattcg tgcaatgcta atatagtaac
     5581 ttggctgtcc tttgaattgt cactgtgctg agtggatttc ctctagaact ctggattcca
     5641 tgagttgggc ccaggccgtg gtagaataat aacagaaaga agataaatgc cacagatctt
     5701 agcactgggc ttccttgaag gacttaagtc agtttagaag atgaaggaag ccgatggaga
     5761 aatgtaaaga ttagctttgg aagccgtcct ctagctatcg aacaatcaag ggaatgcacc
     5821 tctcagctac aaagaacagc cagacagctg ggtttttttt ttctttttct tttataaatg
     5881 tttctgtgtt gtgtcaaaat gatttctggt gatttaaact aacagataat cacagctgct
     5941 gtctaaatcc atagtgttta aaaattacaa aatgaaaaaa aaaaaccact tcattacctg
     6001 tgaagactgt gtctgtgttt ttaactattt cttgtacaaa tatatgaaaa cttttatgag
     6061 gagactggtg ccacgtagct gaataatggg gaaagggatc tttctgttcg taaaaacctt
     6121 agcagtgtta ccaactctac aatatatata tacaaataat taaagcgtta caaagcgaca
     6181 gctatgctac atttgttttg tgtgaagcta accggactta acttcctgag tgcctggctt
     6241 attttgaaac atttttttca ttgaccattg ataatgctgc aaatcagaaa tgtacatact
     6301 tcatttacaa cagggttctt tttatacttt tgtagattct catacatgtc acatacatgg
     6361 ttgtctttat gtaacttaat tttttcatcc gcaggtgcca ttttcataat aaacttctct
     6421 tggatttgtt ac
//
