LOCUS       XM_006515939           10150 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuronal PAS domain protein 3 (Npas3),
            transcript variant X9, mRNA.
ACCESSION   XM_006515939
VERSION     XM_006515939.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006515939.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10150
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..10150
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /note="neuronal PAS domain protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 1707 long SRA reads, 5 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
     CDS             3362..7051
                     /gene="Npas3"
                     /gene_synonym="4930423H22Rik; bHLHe12"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 3 isoform
                     X9"
                     /protein_id="XP_006516002.2"
                     /db_xref="GeneID:27386"
                     /db_xref="MGI:MGI:1351610"
                     /translation="MRERAGERGREGGKERRREREREREREREREREREREREREESE
                     RRGTQREGVGEKRRRGRGKGVCISLQEKRELWSKATGKCPEILSQWSSWDPPACPPSL
                     GPSTLRPPPPPAGRVCSPTCPPAEPGGCGEGACGRAPARAPGGPGRAARGTARPPPPP
                     PAPPPPPPAPAACLRAGHVSGAGAARAAGAVRRMDRGGRRAEGGPGAGSRGGGELRLG
                     ALRARGDVRPPATLGPHYFPVASQAQQRGRRHRRRHGHGHGRRPPGPPSAAHARTLSR
                     QPTHTHTPALPTPPAPGGGSEAKSKRGKKNCRKMAPTKPSFQQDPSRRERITAQHPLP
                     NQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAA
                     ITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKVIGAQRRRSPSAL
                     AIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVH
                     PGDHVEMAEQLGMKLPPGRGLLSQGTTEDAASSASSSSQSETPEPVETTSPSLLTTDN
                     TLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVA
                     HALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAE
                     DVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNY
                     LLSNPEYKDTPMDIAQLPHLPEKASESSETSDSESDSKDTSGITEDNENSKSDEKGNQ
                     SENSEDPEPDRKKSGSACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFEHPKAAEDGF
                     GALGPMQIKVERYVESEADLRLQPCESLTSDSAKDSDSANEAGAQASSKHQKRKRRRK
                     RQKGGSASRRRLSSASSPGLDAGLVEPPRLLSSPHSASVLKIKTEIAEPINFDNDSSI
                     WNYPPNREISRNESPYSMTKPPTSEHFPSPQGQGGSSGGGGALHVAIPDSVLTPPGAD
                     GTAGRKTQFSGTAPVPSDPLSPPLSASPRDKHPGGGAGSGGGGPGASNSLLYTGDLEA
                     LQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHA
                     VNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPGGNVFTTAEG
                     LFSTLPFPVYSNGIHAAQTLERKED"
ORIGIN      
        1 ccgtccgagc tgggatagtg cccccgtctc gggtactggg gtgggactca ctttgctctt
       61 gttttgtgcc ttacaacaca catgcacctc gtcagggctt actttgcctg cccctgtgct
      121 atagaaggag gggggggggg atacacaatc cgaattgaaa agcactctag tgcactggcg
      181 aagtgaagtc atcctttgcc ctctgccagg ccccgaacgt tgagcctcag ccccgagtag
      241 ccagagagtt ccagtcaagt ctgagacgct gcaggagatg cttttgcaaa gtttgggctt
      301 cctgccccct ttcagcaaaa tgttctcaat gcctccgcgg gtgcgaatcc gcgctgacgg
      361 acagccaggg gagcaattga tcatcggagg ctgattgatc atttgtttcc aaataggaca
      421 gagacgattt tcatgtgcag agatagactt gcgtttctac ctaatagtgt gagatcctgt
      481 cacctgttac tacagggaat acaacgtgaa atccgaatct cttaggcgct gttaactatc
      541 ttaaacgcat tatgatgcaa atggatggga ttccgagatc caagttagga agcaaatttt
      601 acaaaagtta ggcttggtgg tgaaagggaa gttttaatat agaaattgtt tttagttttc
      661 taaagatagt ctctagattc aaaataattg tcattaaaac actgagcaac ctttgattga
      721 ggaaggaaat aaagagaaat ttaccatcaa cagctttcta accctaaagt tttcccttta
      781 aggataactt tcgatgttct aagattttat tgaaaatggg attcacaaaa tcgctatgag
      841 aaaaactaac aatataatca aaaaggtaaa ctctctattc atgaggctca attttatggt
      901 agatggaaga aaaaaaagca catgagagtg tgaaattaaa tatttgtgtt tcccagattg
      961 tacacgatta aacatctgag agatttgcca atggcattta acttaaaata tacataatgc
     1021 ataattcaaa ttcccatttt acctcatctt tgaaacttca ttgatttgag agcctttggt
     1081 ttgaaacaat agtatttaaa ctgcaaaggt tacagtaatc tgtcattgct atgttttgtg
     1141 ccttctaacc aatggcccag tgaccagatt ttgcctaaca cagtattttc caagttcatg
     1201 taattgcaaa tattctgtag aagacttcat tacatgctct gcttattgtc aaaagtttta
     1261 aaaagaagtc gtggaaataa ctctaaaggg gcaaatcttt gtcagacaca tattttttat
     1321 taaattattt tagtcatgtt ttactcaagc gattacaaga acctttaaca aaaaagatct
     1381 gggcatcttt caaaagcaga acaccagtaa agaattcagt ttccccattt catggttcag
     1441 gtatgggttt tttttttttt ttttttgtct tttataaaac atttaaatga caataggatc
     1501 tggcggtcac tttaactagg aagtgtaggc aatagtgaca atagtgtggt ctctgaggaa
     1561 gagattcaag ggtcagaaat gtcacatggc ctttggacaa ttccagggac ctccaggaac
     1621 ttgagctgac ccaaaagatg taaattgggc ataaggagct gtcgtgaatc tcccgctttt
     1681 agggtttttc cccctcagca ttggcattgt cctttagaag aaaaagatga tttgggggtt
     1741 caggagtatc caggggaagt catcccccca cttcaccccc aagcacctgc ctcaacactt
     1801 ccctttaaag gttcctgttg ggtttcaggc cacttgttaa acctcaaccc actggtcttc
     1861 taaagacagg ggtgaaaaac aaaacaaaac aaaacaaaaa caaaaaccca ccaaaccctc
     1921 taaactttct cctttggagt gaattatggc ttcctttgat ttaagtgttc tctcatactg
     1981 acaaggtaag atgatagtag tgaaatgcag ttttcttccc atggtgttac tcagatctcc
     2041 tgacacctgt tactgtcttt aattttagtt aatttggggg cagaagagtt gggcaagaag
     2101 attattggca ggtgttggag gtaaggtcta agccaggagt ctcctttcgt agttcaccag
     2161 cactaggagt caccaggact ggcttcgggg ctctgaggag tagatttaat ttcctcccgg
     2221 agacctggac gttttgctaa aaagaattgt gaaataacgt ttaagaattt taaagtactt
     2281 ttggggatct gatgaggggt gacaggagtg ggtttttaag cagtggcctg cctgttgaga
     2341 gagcacaaac ttctcttatt tgtcacctca gggcagaact gccctggact gtctcctgga
     2401 accagaactt ccaactggtt aactcctctc ttctttgcta gcccccattt gtcttgtagg
     2461 caacactcat cattgctcca attcatttcc caactcctat ctctcctacc tgtagcgcct
     2521 actaactact ccagagagtc ttcaatagtg tgaagatatt gcagctctgt caccacactt
     2581 aagaatccag tagcagttca gaatcccctc cctacttaac tggaagggta gcacacaagg
     2641 agacactcat tgagcacccc caccccaact ttaaagcaga aggcaaagct tcactcacga
     2701 atgatgtttc ccaccagact cttccatttg ttcaacgcgg aacagtcttg ggtgtctgtc
     2761 ttgcctgctt aatacagaac tggccctagt ctgcaaaagg agctgtcccc attctgcaga
     2821 gtggcatagt ggataaatga ctgcccgggg tttctccagg taaaaaaaaa tatccatcta
     2881 gctctgcact gagtagccat ttctctaggc ttccatggga ggcgactaga ctagattcca
     2941 gaggccagca atccagtccc aggaaccggg acttggctct gcaaaggcat ttgtatgtaa
     3001 ctgcgtctca gcgcctgcgg attggcctat gaaccctggg gtctgcatat ctgtacgggt
     3061 gtggaaaatg cagatgttct ggctctggct cctggctgag ggcgccagag tcacaaggtg
     3121 caagtcctgc atccgtgctc agaggctcag ggcagttggg cctgctggcc tgggtcagct
     3181 caagactcat cacctcacgc ttttatttcc actgtccctg aagatagtcc agcctactct
     3241 cctggcatta taaaccccac tctctctttt ctgcaggctg gcatactcta gagaagggaa
     3301 gtgtttgaaa ctgcaactga gtggcgttgt tgcgccagca gccaagcttc ccagtcccca
     3361 aatgagagag agggcgggag agagagggag ggaaggaggg aaggagagaa ggagagagag
     3421 agagagagag agagagagag agagagagag agagagagag agagagagag agagagagag
     3481 agaagagagc gagcgcagag gcacacagag agagggggtg ggggagaagc gaaggagggg
     3541 gagggggaag ggggtgtgta tcagcttgca ggagaagaga gagctctgga gcaaagcaac
     3601 tggaaaatgc ccagaaatac tttcccagtg gtcaagctgg gacccccccg cgtgtcctcc
     3661 ctctctgggt ccctccactc ttaggccccc gccgccccct gcagggaggg tgtgctcccc
     3721 cacctgcccg ccggccgagc ccggtggctg cggcgagggg gcttgcggcc gcgcgccggc
     3781 ccgagcaccc ggaggccccg gccgggctgc ccgcgggacc gcgcggccgc ctcccccgcc
     3841 gcccgcccct cctccgccgc cgcccgcgcc ggccgcctgt ctccgcgccg ggcatgtctc
     3901 gggagccggg gcggcccggg ccgcgggcgc tgtgcggcgc atggaccgag gcggccggcg
     3961 agcagaggga ggaccaggcg cgggcagccg aggaggcggc gagctgcggc tgggagcact
     4021 ccgggcgcga ggggacgtcc ggccgccggc gacgctcggg ccccactact ttcccgtagc
     4081 ctcccaggct cagcagcgcg gccgccgcca ccgtcgccgc cacggccacg gccacggccg
     4141 ccgcccgccg gggcccccga gcgccgcgca cgcccgcact ctctcccgcc agcccacgca
     4201 cacgcacacc cccgccctcc ccacgccccc cgccccggga ggggggagcg aggcaaaaag
     4261 taagagagga aaaaaaaatt gcaggaagat ggcgcccacc aagcccagct ttcagcagga
     4321 tccttccagg cgagaacgaa taactgccca gcatcctctg cccaaccaat cagaatgtag
     4381 gaaaatctac agatatgacg gaatctactg tgaatctacc taccagaatt tacaagcact
     4441 gagaaaggag aaatccagag atgctgctcg atcccgccgg ggaaaagaaa attttgagtt
     4501 ctatgaattg gccaagctgt tgcctcttcc tgccgccatc accagccagc tcgacaaggc
     4561 atccatcatc cgacttacaa ttagttatct caagatgaga gactttgcca accaagggga
     4621 tcctccatgg aacctgagga tggaaggccc tccaccaaac acctcagtaa aagttatagg
     4681 tgcacaacga aggcggagcc ccagcgcact ggccattgaa gtatttgaag cacatttggg
     4741 aagccacatt ttgcagtccc tggatggctt cgtatttgca ctaaatcaag aaggaaaatt
     4801 tttgtacatt tctgaaaccg tctctatcta cctaggcctc tcacaagtgg agctgacagg
     4861 tagcagcgtc tttgactatg tccaccctgg ggaccacgtg gagatggcag agcagctggg
     4921 catgaagctc ccgcctgggc ggggtctcct ctcgcagggc accacagagg acgcggccag
     4981 ttcagcatct tcctcttctc agtcagagac ccctgagcca gtggagacga ccagccctag
     5041 tctgctaacc acggacaaca cccttgaacg gtcctttttc atccgaatga agtctactct
     5101 gaccaaacgt ggagtccaca tcaagtcatc tgggtataag gtgattcaca taacaggccg
     5161 gcttcgcctc agagtgtcgc tgtcccacgg gaggaccgtc cccagccaaa tcatgggtct
     5221 ggtggttgtg gctcacgcct tgcctccccc tacgatcaat gaagtcagaa ttgactgcca
     5281 tatgttcgtc actcgagtaa acatggatct caatatcatt tactgtgaaa ataggattag
     5341 tgattacatg gatctgaccc ctgtagacat cgtagggaaa agatgctacc acttcatcca
     5401 tgccgaagat gtagaaggca tcaggcacag tcacctggac ttgctgaata agggtcagtg
     5461 tgtgaccaag tactaccgct ggatgcagaa gaatggaggc tacatctgga tacagtctag
     5521 tgccaccata gctattaatg cgaagaatgc aaatgagaag aacatcatct gggtgaatta
     5581 tcttcttagt aatccggagt acaaggacac acccatggac attgcgcaac tcccgcattt
     5641 gccagagaaa gcgtcagaat cctcagagac atccgactct gagtcagact ctaaagacac
     5701 ctcaggtatt acagaggaca atgagaactc caagtccgac gagaagggca atcagtccga
     5761 gaatagcgaa gatccggagc ctgaccgcaa gaagtcaggc agcgcatgcg acaacgacat
     5821 gaactgcaac gacgatggcc acagctccag caacccggac agccgtgaca gcgacgacag
     5881 cttcgagcac tcggactttg aacaccccaa ggcggccgag gatggcttcg gcgcgctggg
     5941 ccctatgcag atcaaagtgg agcgctacgt ggagagcgag gcggacctgc gactgcagcc
     6001 ctgcgagtcg ctcacgtcgg acagcgccaa ggactcagac agcgcgaacg aggcgggcgc
     6061 tcaggcatcc agcaagcacc agaagcgcaa gcggcggcgg aaacggcaga agggcggcag
     6121 cgccagtcgc cgacgcctgt ccagcgcgtc cagcccaggc ctggacgccg gtctggtgga
     6181 gcctccgcgg ctgctgtcat cgccgcacag cgcctctgtg ctcaagatca agacagagat
     6241 cgccgagccc atcaacttcg acaacgacag cagcatctgg aactacccgc ccaaccggga
     6301 gatctccagg aacgaatccc cgtacagcat gaccaagccc cccacctccg agcacttccc
     6361 gtccccgcag ggccagggag gcagcagcgg tggcggggga gcgctgcacg tggccatccc
     6421 cgactcggtc ctcaccccac cgggcgccga tggcacagct ggccgcaaga ctcagttcag
     6481 cggcacagcc ccggtgccct ctgatccact gtcgcccccg ctctctgcgt ccccgcggga
     6541 caagcacccc gggggcgggg cggggagtgg cgggggtggc cctggtgcat ccaactcctt
     6601 gctgtacact ggggacctgg aggccctgca gaggttgcaa gcgggcaacg tcgtgcttcc
     6661 gctggtgcac cgggtgaccg ggaccctggc agccaccagc acagccgcac agagggtcta
     6721 caccacgggc actatccgct acgcacccgc tgaggtgacc ctggccatgc agggcaacct
     6781 gctacccaac gcgcatgctg ttaacttcgt ggacgttaac agcccaggct ttggcctcga
     6841 ccccaagaca cccatggaga tgctctacca ccacgtgcac cgactcaaca tgtcaggacc
     6901 atttggcggc gccgtgagcg cggccagcct cacacagatg ccaggtggca acgtgttcac
     6961 cacagccgag ggactcttct ccacgctgcc cttcccagtc tacagcaacg gtatccacgc
     7021 ggcacagact ctggagcgca aggaggactg agcgggcccc actcaggagg catcgtcgtt
     7081 ttcgtttaga cctttcattc tagcactttg aattcgagct ggtcagcgtc ttctcgcaac
     7141 acggtggccc catcccaccc cctctctttc tttcattaga cttattcttt cttgtaaaga
     7201 catgtttatt ttttgccttc agagggtcag atgaccggtt gcctgccatt ttgtcttcta
     7261 agatgtgtgt tgggttgttt gactttcctt tacatcttta ttaagatgtc tttaatgtgt
     7321 atatgcctct gccatagaat actcagtctt gtggtcaaga gatttctcaa gtgacaacca
     7381 ttgggttttc ttcctaaaga tcttgatatg atcaagatgg aaagagacac gcataaacga
     7441 ttgtgccctg tttgactaag tcaaatgaaa tggggtgggt gttttgtttt ttgtttttgg
     7501 tttttttttt tttttcctgt tcctaattcc tttgaaaata ggggaatagt attttagaat
     7561 tttatgcaga atttaattct ttttatgatt aagattttaa gatttttctt acttgcacac
     7621 ataaaaataa tttggtttct taaacttaat ttctggcctg tgactagaat gtttgttttt
     7681 ttgttttttt tttaaaaagt cggactaagt gttaattact gaaacattaa cttaatttct
     7741 aaaaccatgg tgctatcatt tattaatcta taatgtcttc atacaaaatg cagctcctgg
     7801 gctggatttt ggaagagaaa atgtgttctg tcctggtctg gagtcccgtt gctacagtca
     7861 gtctccttgg ttagttaaga caaagccctc attaacattt gctgcaggac ttaaaaattt
     7921 tttacctccc aactaacaaa catagcctca ctttcaattg aatgggtcag taaagcccta
     7981 ttaaaagggg acttttggac aactcggact gatttgagga acagtttaag tacatactgc
     8041 catttttgag attcttttgt ccttagtcag tctaactgag gctggttttt tgcaacttca
     8101 gtaacacttc agagtaaaag aagaaggaga aatatttaac atgttcttta tttggggttt
     8161 ttgtttgttt ttatttcttg ctaaaaaaaa ataggtttgt atggggggtg ctgatttgat
     8221 agaatttatt tcccttcaat tcttatttga gttgaaacca acaagttttt aaaactaaag
     8281 aatgggttaa taagcttcag acagataact acaaccgaaa accgcacatt caatgaaaaa
     8341 aaaagagaaa aaaaaaagaa aaagaaaaag aaaaaagagc ctattttgtc ttcgttgcca
     8401 gaaatcagtg tggtgtcaaa cactccaaat gactgtccag tgtagactct tcccccactt
     8461 cgtttttggc agctgtttgt taaggcatct aatcccagat gtgaaaactg taatgtgtgc
     8521 aacgtgtagt gtccttggct gtgggtccca ttgcagtttc tgtgtgtttc tatatgcagt
     8581 gtatgctaag ctactgtagt cgttttttgt ccccgtcttc tccgtgctct gtctctagtg
     8641 gagtggcaca gttccattcc tgcggtccta gtgaatcggt gactcttggg ggttagtggg
     8701 tttgtgtggt ggcctttccc tgtgacgtca cccatatgct tctattgtct gtggatcctg
     8761 tcttactttt cgaaatccct gccgttgctt tgctgttgta tactctccct gcctcccctg
     8821 tctttccctg tctgcccttt ctctcctctg cttccccctt ccctgatacc ccaaatctgt
     8881 atcattctca gagataaaaa gaaaaaagaa aaaaaaagaa aaagaaaaaa gactcttaac
     8941 tagctcaagg ttaatggagc catctttccc acaacggaat tctggatgtg actttctctg
     9001 tggagtacta cacagagccc tgaagaataa tgctcagata tattgaataa attgacgcca
     9061 tgcaacctca gctgttaaca ttcccagagt cccttgtgtt ctacctataa gcagtgggtg
     9121 cttttctttg ctttcctttc aggttggctg atggagcagt atataaagca attaccagtt
     9181 agacagaaaa tgatttcaaa ggccaaccaa cattttttta aaaacaaaat gggaggggtt
     9241 aatggaatat agaattgtca tatatatttg tttattcgtg caatgctaat atagtaactt
     9301 ggctgtcctt tgaattgtca ctgtgctgag tggatttcct ctagaactct ggattccatg
     9361 agttgggccc aggccgtggt agaataataa cagaaagaag ataaatgcca cagatcttag
     9421 cactgggctt ccttgaagga cttaagtcag tttagaagat gaaggaagcc gatggagaaa
     9481 tgtaaagatt agctttggaa gccgtcctct agctatcgaa caatcaaggg aatgcacctc
     9541 tcagctacaa agaacagcca gacagctggg tttttttttt ctttttcttt tataaatgtt
     9601 tctgtgttgt gtcaaaatga tttctggtga tttaaactaa cagataatca cagctgctgt
     9661 ctaaatccat agtgtttaaa aattacaaaa tgaaaaaaaa aaaccacttc attacctgtg
     9721 aagactgtgt ctgtgttttt aactatttct tgtacaaata tatgaaaact tttatgagga
     9781 gactggtgcc acgtagctga ataatgggga aagggatctt tctgttcgta aaaaccttag
     9841 cagtgttacc aactctacaa tatatatata caaataatta aagcgttaca aagcgacagc
     9901 tatgctacat ttgttttgtg tgaagctaac cggacttaac ttcctgagtg cctggcttat
     9961 tttgaaacat ttttttcatt gaccattgat aatgctgcaa atcagaaatg tacatacttc
    10021 atttacaaca gggttctttt tatacttttg tagattctca tacatgtcac atacatggtt
    10081 gtctttatgt aacttaattt tttcatccgc aggtgccatt ttcataataa acttctcttg
    10141 gatttgttac
//
