LOCUS       XM_036152765            1887 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus neuronal PAS domain protein 1 (Npas1),
            transcript variant X3, mRNA.
ACCESSION   XM_036152765
VERSION     XM_036152765.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..1887
                     /gene="Npas1"
                     /gene_synonym="bHLHe11; MOP5"
                     /note="neuronal PAS domain protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, 29 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     13 samples with support for all annotated introns"
                     /db_xref="GeneID:18142"
                     /db_xref="MGI:MGI:109205"
     CDS             229..1770
                     /gene="Npas1"
                     /gene_synonym="bHLHe11; MOP5"
                     /codon_start=1
                     /product="neuronal PAS domain-containing protein 1 isoform
                     X3"
                     /protein_id="XP_036008658.1"
                     /db_xref="GeneID:18142"
                     /db_xref="MGI:MGI:109205"
                     /translation="MATPYPRSGGRGEVKCGGGRGAGVPWDFLPGLMVKAPPGPCLQA
                     QRKEKSRNAARWRRGKENLEFFELAKLLPLPGAISSQLDKASIVRLSVTYLRLRRFAA
                     LGAPPWGLRAVGPPAGLAPGRRGPVALVSEVFEQHLGGHILQSLDGFVFALNQEGKFL
                     YISETVSIYLGLSQVELTGSSVFDYIHPGDHSEVLEQLGLRAASIGPPTPPSVSSSSS
                     SSSSSLVDTPEIEASPTEASPAFRAQERSFFVRMKSTLTKRGLNVKASGYKVIHVTGR
                     LRARALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDMGPSEL
                     VGRSCYQFVHGQDATRIRQSHLDQEEPPVDGKQAVPADQDKDKDPQARGKRIKVEASP
                     KEARGSEDSGEEELSDPPAPPRPEFTSVIRAGALKHDPVLPWGLTTPGDPSPALLHAG
                     FLPPVVRGLCTPGTIRYGPAELSLMYPHLHRLGAGPSLPEAFYPTLGLPYPGPTGTRV
                     QRKGD"
ORIGIN      
        1 cgaagacagg caccgcccct cgccgccgct gtccgtggtc tcaaagtctg cgaggccgcc
       61 gtgggcgccg agagccgggc tccccagccc gcgcgccccg gggtctatgg agcggcccct
      121 ccacgccacc cagtggaccc cacgccgcgc cccgagcacg cccagcggcc agggaactga
      181 gccccacctg cgactccttc gcacctgaat tcccgagtcc ccgtcgagat ggcgaccccc
      241 tatcccagaa gcggtggccg aggtgaagtc aagtgcgggg gcggccgtgg agccggcgtc
      301 ccctgggatt tcctgcctgg gctgatggtc aaggccccgc ccggaccctg cctgcaggcg
      361 cagcgcaaag agaagtcccg caacgctgcg cgctggcgac gcgggaagga aaatctggag
      421 ttcttcgagc tagccaagct gctccctctg cccggtgcca tctccagcca gctggacaag
      481 gcgtccatcg tgcgtcttag cgtcacctac ctccgcctgc gtcgttttgc cgcgctgggg
      541 gcgccgccct gggggttgcg ggccgtcggg cctccggctg gcctcgcccc aggccgccga
      601 ggccctgtgg ctctggtctc tgaagtcttc gagcaacacc taggtggaca catcctacag
      661 tccttggatg gcttcgtgtt cgctttgaac caggaaggga aatttctcta catctcagag
      721 acagtgtcca tctacctggg tctctcacag gtggagctga cgggcagcag cgtcttcgac
      781 tacatccatc ctggggacca ctcggaggtc ctagagcaac ttggattgcg ggctgcaagc
      841 atcggtcccc ctacaccacc ttccgtgtcc tcctcttcct catcgtcttc ctcctcgctg
      901 gtggacaccc ctgagattga agccagcccc accgaggcat cgcctgcctt ccgagcccaa
      961 gagcggtcct tctttgtccg catgaagtcc accctcacca agaggggcct gaatgtcaaa
     1021 gcctcggggt acaaggtcat tcatgtgaca gggcgcctga gggcccgagc cctgggtctt
     1081 gtagcccttg gacacacgct gcccccagcc ccactggctg agctgccttt gcacggacac
     1141 atgattgtct tccgcctcag cctgggcctc accatccttg cttgtgagag cagagttagc
     1201 gaccatatgg acatggggcc ctcagagctt gtgggacgca gctgctacca gtttgttcat
     1261 ggacaggatg caaccaggat ccgccaaagc catctggacc aggaagagcc tccagttgac
     1321 gggaagcagg ctgtgcctgc ggaccaggac aaggacaagg accctcaggc ccgaggcaaa
     1381 cgcatcaaag tggaggccag cccgaaggaa gctagaggct cagaggacag tggagaagag
     1441 gagctctcgg atccaccggc tccacctcgg ccagaattca cttctgtcat ccgggcggga
     1501 gccctgaagc atgatccagt gctgccgtgg ggcttgacaa ctcccggaga cccctcaccc
     1561 gccctccttc atgcaggctt cctgccaccc gttgtgcggg gcctgtgcac cccaggcacc
     1621 atccgctatg gccctgcgga gttgagcctg atgtatccac atctgcacag gctgggcgca
     1681 ggcccctcgc ttccagaggc cttttaccct acgctgggct tgccctatcc ggggcccaca
     1741 ggtactaggg tgcagcggaa gggagactga agacagtgta acaccagagg gccaaacctg
     1801 agacacagat caagtcctgg agtcattctt gagaattaaa caccatgccc taaggggctc
     1861 cctccccggg gatgctgcct ctcatga
//
