LOCUS       XM_036157574            3452 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus NOVA alternative splicing regulator 1
            (Nova1), transcript variant X17, mRNA.
ACCESSION   XM_036157574
VERSION     XM_036157574.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3452
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..3452
                     /gene="Nova1"
                     /gene_synonym="9430099M15Rik; G630039L02; Nova-1"
                     /note="NOVA alternative splicing regulator 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 3 ESTs, 1043 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:664883"
                     /db_xref="MGI:MGI:104297"
     CDS             152..1378
                     /gene="Nova1"
                     /gene_synonym="9430099M15Rik; G630039L02; Nova-1"
                     /codon_start=1
                     /product="RNA-binding protein Nova-1 isoform X8"
                     /protein_id="XP_036013467.1"
                     /db_xref="GeneID:664883"
                     /db_xref="MGI:MGI:104297"
                     /translation="MPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPM
                     TTSRANQVQYHPLIYTILSQRLCQLEKQILVKIIVPNSTAGLIIGKGGATVKAIMEQS
                     GAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVT
                     GPVANSNPTGSPYANTAEVLPTAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITS
                     ALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGST
                     AGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLV
                     GAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQR
                     ITYEQGVRAANPQKVG"
ORIGIN      
        1 atgtctattc agggctgacc acttgggatt ggataacatt tctgtgggca catccctgga
       61 gaagggtact actgagaggg tttgcttgat ccagggaaca attgaagcgc tgaacgcagt
      121 tcatggattc attgcagaaa aaatccgaga aatgccccaa aatgttgcca agacagaacc
      181 agtcagtatc ctacaacctc agaccaccgt taatcctgat cgcatcaaac aaacattgcc
      241 atcttcccca actaccacca agtcctctcc atctgacccc atgaccacct ccagagccaa
      301 tcaggtacag tatcatcctc tcatctacac catactttca cagcggttgt gccaactgga
      361 gaaacagata ctggtaaaga ttatagttcc caacagcaca gcaggtctga taatagggaa
      421 gggaggtgct actgtgaagg ctataatgga gcagtcaggg gcttgggtgc agctttccca
      481 gaaacccgat gggatcaact tgcaagagag ggttgtcact gtgagtggag aacctgaaca
      541 aaaccgaaaa gctgttgaac ttatcatcca gaagatacaa gaggatccac agagtggcag
      601 ctgtctcaat atcagttatg ccaatgtgac aggtccagtg gcaaattcca atccaaccgg
      661 atctccttat gcaaacactg ctgaagtgtt accaactgcc gcagcagccg cagggctatt
      721 aggacatgct aaccttgctg gcgttgcggc ctttccagca gttttatctg gcttcacagg
      781 caatgacctg gtggccatca cctctgcact taatacatta gccagctatg gatataatct
      841 caacacatta ggtttaggtc tcagccaagc agcagcaacg ggggctttgg ctgccgcagc
      901 tgccagtgcc aacccagcag cagcagcagc caatttgttg gccacctatg ccagtgaagc
      961 ctcagccagc ggcagcacgg ctggtggaac ggcggggaca tttgcattag gtagcctggc
     1021 tgctgctact gctgcaacca atggatactt tggagctgcc tcgcccctag ctgccagtgc
     1081 cattctaggg acagagaaat ccacagatgg atcaaaggat gtagttgaaa tagcagttcc
     1141 agaaaactta gttggtgcaa tacttggcaa aggagggaaa accttagtgg aataccagga
     1201 gttgactggt gcaaggatac agatctccaa aaagggagaa ttcgtacctg gcacaaggaa
     1261 tcggaaggta accattactg gaacaccagc tgcaacacag gctgctcagt atttaattac
     1321 acagaggatc acatatgagc aaggagttcg ggctgccaat cctcagaaag tgggttgagt
     1381 gtccccatta tacgtcagag tgttttaacc cctcctttgc cccatttgga agaaggatgt
     1441 actgtacttt gcagaagtga agtttttctg ttattaatat ataattatgc aaatgaatgc
     1501 gactatgttg acaatgtgta tatgtaaata atatgtgttt taccagatgt ttcatagaat
     1561 tttttcttga tctgttttgt tctctatact ttgcttgtgt atatttgtca gaggtgtttc
     1621 tagtgtaaga tttaagcctg ccattttacc agcattattg tagtttaatg attgaatgta
     1681 gacagggata tgcgtatagt tttcagtatt agttctagat aacactaaat taactactgt
     1741 taggttgagt atggtggggt cagtgaccta aactggagtg aggccaaagc actgtcatgt
     1801 atgtcttact tcctgcttag ggcacagaga agtaggaaac aatattttga aaaataagtt
     1861 ttcaatttaa aatgatcaaa aagcaatata gttgcataaa agcactgtaa aatatttaaa
     1921 aggttaaaac tgtggaaaat tacattggta agtttacaga tcaataaaag cacctgttct
     1981 ccatctgaac tagacaatgg aaataatgct gcatgctggc cagggcccat tcttcatcat
     2041 ttgtaagttc aacaaaagtt ctcacatgga gtcccacctc ttccgaggtt tgtacatttg
     2101 tttttaagca ctgaattcac tactgatccc atcgcctggc cagtagaaca gtcattactc
     2161 catgaacatc ctcactgttt agacacataa ctgtggtaca gtgtattgga aattttataa
     2221 acaaaagtga aagtgccaac acattattga tagctgataa tgtttcatta tctgcaactg
     2281 ctggataagt atgttgcatt ttaagagctt ataattgtgt ataatttgtt aacactagca
     2341 acctattagt attgtgaatg tagagtttac tgtgaagcta tctgtgactt agctgtctgc
     2401 tccatgacgg agttcttgca gcatggcgct agcagccagt gcagtttcta atactcggta
     2461 atttgcatgt tttgtggagc atttttatgt caccaaccag acagtatttc ctgcatgctt
     2521 atttagaaga ggcagtttat cttgagaggt agtgtgatct acctttgtca ggctttttga
     2581 caggtcattt cagagtaagc ctttgttccc aagacccaac aactgtcacc ctcttctgta
     2641 cctctcctga gtgccaactg tccaggccat ttgacacacc atctgttaac ctctgagttt
     2701 gcccactcaa ggccactcat aggggcatcc atccccagca cctcctcatg ctgtgcatgc
     2761 agtcttaaat tcaatggaca aaactaaaat gctggctacc tctggatcat ctggctgagc
     2821 aactgaatta caaaagagaa ttacttccat ctcaacttca gcccattggt tacgtccatc
     2881 ctagcaagct aaatggcatc ccagctgctc ctttctgtgc aaccaattaa agaacaatga
     2941 gtgtgatgct ccatgtctga atttcgtcca gcctctctct gaactgtgat ctttgtcctc
     3001 atgaactttc ccttttgttc attgaactat atggactctt catttcatat tgatttactg
     3061 tgcaatttac ttttggacat tgagaacttg aaattatttc ctgatccctt ccccttccac
     3121 tattaataat tcatttctgt caaactgtaa gagtaggact catttttttt tttttttagt
     3181 ttttaacatt ggactgttat ttcatttaga gttctctatc tctaaatatt tatttagaga
     3241 atgattttca aagggaatga tatgcttgtt taaatgaaag agaaaagctg tagtaaactg
     3301 tgttaattgg taatgactat ttatcgtcga tactctgtag ctgtgtaagt tttgacaaat
     3361 agtgtatctc gtggaatcag tggttagcat tgccgctatt atatttactc attttatcat
     3421 tataaatgtg cttagttcat catgtagcat ca
//
