LOCUS       XM_036157571            4117 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus NOVA alternative splicing regulator 1
            (Nova1), transcript variant X14, mRNA.
ACCESSION   XM_036157571
VERSION     XM_036157571.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..4117
                     /gene="Nova1"
                     /gene_synonym="9430099M15Rik; G630039L02; Nova-1"
                     /note="NOVA alternative splicing regulator 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 3 ESTs, 1076 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 20 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:664883"
                     /db_xref="MGI:MGI:104297"
     CDS             817..2043
                     /gene="Nova1"
                     /gene_synonym="9430099M15Rik; G630039L02; Nova-1"
                     /codon_start=1
                     /product="RNA-binding protein Nova-1 isoform X8"
                     /protein_id="XP_036013464.1"
                     /db_xref="GeneID:664883"
                     /db_xref="MGI:MGI:104297"
                     /translation="MPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPM
                     TTSRANQVQYHPLIYTILSQRLCQLEKQILVKIIVPNSTAGLIIGKGGATVKAIMEQS
                     GAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVT
                     GPVANSNPTGSPYANTAEVLPTAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITS
                     ALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGST
                     AGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLV
                     GAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQR
                     ITYEQGVRAANPQKVG"
ORIGIN      
        1 tgccccggcc ccgtctcatc aagatggcga cccggggttc tgagccgacc cgctcgcccc
       61 agccggtgct ggccccggcg acagggtccg ctcccagggc cgccccccgc gagaggtgat
      121 ggccgcctga agatgcgcgc tgcatttaac agtctgatca aataaataaa taaatggcac
      181 ttgggtagcg gcttgcagat gctgggggca ccggagactt ttgcctctgt tcatcccctt
      241 gctctgggcc acaagtagta tgcaaaatct tgatgagtgc atgccctgag cgcacttaca
      301 tggtcggtac aaatatcgca ttgatttgtc ttcaagggta tgcatacgag gggggtgtct
      361 ggtacggtga cttgttagtt aacatcctgc gcttcctcgg aagatgagtt ataacgggac
      421 cgctatcgct tcttcatttg cactggagtc atcttaacaa tgcatccaat gcatcgaagc
      481 agagaagacg gccagtactt tctaaaggtt ctcataccta gttatgctgc tggatctata
      541 attgggaagg gaggacagac aattgttcag ttgcaaaaag aaactggagc cactatcaag
      601 ctgtctaaat ccaaagattt ttatccaggt gctgccagcg gcagaagaga ttgtacatgg
      661 gcccgtacag aaggtatttc tccacggtgc catctgcaga gtgacactga ctaggagtac
      721 cacatagact gtactactga gagggtttgc ttgatccagg gaacaattga agcgctgaac
      781 gcagttcatg gattcattgc agaaaaaatc cgagaaatgc cccaaaatgt tgccaagaca
      841 gaaccagtca gtatcctaca acctcagacc accgttaatc ctgatcgcat caaacaaaca
      901 ttgccatctt ccccaactac caccaagtcc tctccatctg accccatgac cacctccaga
      961 gccaatcagg tacagtatca tcctctcatc tacaccatac tttcacagcg gttgtgccaa
     1021 ctggagaaac agatactggt aaagattata gttcccaaca gcacagcagg tctgataata
     1081 gggaagggag gtgctactgt gaaggctata atggagcagt caggggcttg ggtgcagctt
     1141 tcccagaaac ccgatgggat caacttgcaa gagagggttg tcactgtgag tggagaacct
     1201 gaacaaaacc gaaaagctgt tgaacttatc atccagaaga tacaagagga tccacagagt
     1261 ggcagctgtc tcaatatcag ttatgccaat gtgacaggtc cagtggcaaa ttccaatcca
     1321 accggatctc cttatgcaaa cactgctgaa gtgttaccaa ctgccgcagc agccgcaggg
     1381 ctattaggac atgctaacct tgctggcgtt gcggcctttc cagcagtttt atctggcttc
     1441 acaggcaatg acctggtggc catcacctct gcacttaata cattagccag ctatggatat
     1501 aatctcaaca cattaggttt aggtctcagc caagcagcag caacgggggc tttggctgcc
     1561 gcagctgcca gtgccaaccc agcagcagca gcagccaatt tgttggccac ctatgccagt
     1621 gaagcctcag ccagcggcag cacggctggt ggaacggcgg ggacatttgc attaggtagc
     1681 ctggctgctg ctactgctgc aaccaatgga tactttggag ctgcctcgcc cctagctgcc
     1741 agtgccattc tagggacaga gaaatccaca gatggatcaa aggatgtagt tgaaatagca
     1801 gttccagaaa acttagttgg tgcaatactt ggcaaaggag ggaaaacctt agtggaatac
     1861 caggagttga ctggtgcaag gatacagatc tccaaaaagg gagaattcgt acctggcaca
     1921 aggaatcgga aggtaaccat tactggaaca ccagctgcaa cacaggctgc tcagtattta
     1981 attacacaga ggatcacata tgagcaagga gttcgggctg ccaatcctca gaaagtgggt
     2041 tgagtgtccc cattatacgt cagagtgttt taacccctcc tttgccccat ttggaagaag
     2101 gatgtactgt actttgcaga agtgaagttt ttctgttatt aatatataat tatgcaaatg
     2161 aatgcgacta tgttgacaat gtgtatatgt aaataatatg tgttttacca gatgtttcat
     2221 agaatttttt cttgatctgt tttgttctct atactttgct tgtgtatatt tgtcagaggt
     2281 gtttctagtg taagatttaa gcctgccatt ttaccagcat tattgtagtt taatgattga
     2341 atgtagacag ggatatgcgt atagttttca gtattagttc tagataacac taaattaact
     2401 actgttaggt tgagtatggt ggggtcagtg acctaaactg gagtgaggcc aaagcactgt
     2461 catgtatgtc ttacttcctg cttagggcac agagaagtag gaaacaatat tttgaaaaat
     2521 aagttttcaa tttaaaatga tcaaaaagca atatagttgc ataaaagcac tgtaaaatat
     2581 ttaaaaggtt aaaactgtgg aaaattacat tggtaagttt acagatcaat aaaagcacct
     2641 gttctccatc tgaactagac aatggaaata atgctgcatg ctggccaggg cccattcttc
     2701 atcatttgta agttcaacaa aagttctcac atggagtccc acctcttccg aggtttgtac
     2761 atttgttttt aagcactgaa ttcactactg atcccatcgc ctggccagta gaacagtcat
     2821 tactccatga acatcctcac tgtttagaca cataactgtg gtacagtgta ttggaaattt
     2881 tataaacaaa agtgaaagtg ccaacacatt attgatagct gataatgttt cattatctgc
     2941 aactgctgga taagtatgtt gcattttaag agcttataat tgtgtataat ttgttaacac
     3001 tagcaaccta ttagtattgt gaatgtagag tttactgtga agctatctgt gacttagctg
     3061 tctgctccat gacggagttc ttgcagcatg gcgctagcag ccagtgcagt ttctaatact
     3121 cggtaatttg catgttttgt ggagcatttt tatgtcacca accagacagt atttcctgca
     3181 tgcttattta gaagaggcag tttatcttga gaggtagtgt gatctacctt tgtcaggctt
     3241 tttgacaggt catttcagag taagcctttg ttcccaagac ccaacaactg tcaccctctt
     3301 ctgtacctct cctgagtgcc aactgtccag gccatttgac acaccatctg ttaacctctg
     3361 agtttgccca ctcaaggcca ctcatagggg catccatccc cagcacctcc tcatgctgtg
     3421 catgcagtct taaattcaat ggacaaaact aaaatgctgg ctacctctgg atcatctggc
     3481 tgagcaactg aattacaaaa gagaattact tccatctcaa cttcagccca ttggttacgt
     3541 ccatcctagc aagctaaatg gcatcccagc tgctcctttc tgtgcaacca attaaagaac
     3601 aatgagtgtg atgctccatg tctgaatttc gtccagcctc tctctgaact gtgatctttg
     3661 tcctcatgaa ctttcccttt tgttcattga actatatgga ctcttcattt catattgatt
     3721 tactgtgcaa tttacttttg gacattgaga acttgaaatt atttcctgat cccttcccct
     3781 tccactatta ataattcatt tctgtcaaac tgtaagagta ggactcattt tttttttttt
     3841 ttagttttta acattggact gttatttcat ttagagttct ctatctctaa atatttattt
     3901 agagaatgat tttcaaaggg aatgatatgc ttgtttaaat gaaagagaaa agctgtagta
     3961 aactgtgtta attggtaatg actatttatc gtcgatactc tgtagctgtg taagttttga
     4021 caaatagtgt atctcgtgga atcagtggtt agcattgccg ctattatatt tactcatttt
     4081 atcattataa atgtgcttag ttcatcatgt agcatca
//
