LOCUS       XM_036157570            3584 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus NOVA alternative splicing regulator 1
            (Nova1), transcript variant X13, mRNA.
ACCESSION   XM_036157570
VERSION     XM_036157570.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3584
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..3584
                     /gene="Nova1"
                     /gene_synonym="9430099M15Rik; G630039L02; Nova-1"
                     /note="NOVA alternative splicing regulator 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 3 ESTs, 1072 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:664883"
                     /db_xref="MGI:MGI:104297"
     CDS             284..1510
                     /gene="Nova1"
                     /gene_synonym="9430099M15Rik; G630039L02; Nova-1"
                     /codon_start=1
                     /product="RNA-binding protein Nova-1 isoform X8"
                     /protein_id="XP_036013463.1"
                     /db_xref="GeneID:664883"
                     /db_xref="MGI:MGI:104297"
                     /translation="MPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPM
                     TTSRANQVQYHPLIYTILSQRLCQLEKQILVKIIVPNSTAGLIIGKGGATVKAIMEQS
                     GAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVT
                     GPVANSNPTGSPYANTAEVLPTAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITS
                     ALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGST
                     AGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLV
                     GAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQR
                     ITYEQGVRAANPQKVG"
ORIGIN      
        1 atcgtactgc aaattgttag aacgtgtgaa tcccgaaaac tggggaagat tttaagacgg
       61 ccagtacttt ctaaaggttc tcatacctag ttatgctgct ggatctataa ttgggaaggg
      121 aggacagaca attgttcagt tgcaaaaaga aactggagcc actatcaagc tgtctaaatc
      181 caaagatttt tatccaggta ctactgagag ggtttgcttg atccagggaa caattgaagc
      241 gctgaacgca gttcatggat tcattgcaga aaaaatccga gaaatgcccc aaaatgttgc
      301 caagacagaa ccagtcagta tcctacaacc tcagaccacc gttaatcctg atcgcatcaa
      361 acaaacattg ccatcttccc caactaccac caagtcctct ccatctgacc ccatgaccac
      421 ctccagagcc aatcaggtac agtatcatcc tctcatctac accatacttt cacagcggtt
      481 gtgccaactg gagaaacaga tactggtaaa gattatagtt cccaacagca cagcaggtct
      541 gataataggg aagggaggtg ctactgtgaa ggctataatg gagcagtcag gggcttgggt
      601 gcagctttcc cagaaacccg atgggatcaa cttgcaagag agggttgtca ctgtgagtgg
      661 agaacctgaa caaaaccgaa aagctgttga acttatcatc cagaagatac aagaggatcc
      721 acagagtggc agctgtctca atatcagtta tgccaatgtg acaggtccag tggcaaattc
      781 caatccaacc ggatctcctt atgcaaacac tgctgaagtg ttaccaactg ccgcagcagc
      841 cgcagggcta ttaggacatg ctaaccttgc tggcgttgcg gcctttccag cagttttatc
      901 tggcttcaca ggcaatgacc tggtggccat cacctctgca cttaatacat tagccagcta
      961 tggatataat ctcaacacat taggtttagg tctcagccaa gcagcagcaa cgggggcttt
     1021 ggctgccgca gctgccagtg ccaacccagc agcagcagca gccaatttgt tggccaccta
     1081 tgccagtgaa gcctcagcca gcggcagcac ggctggtgga acggcgggga catttgcatt
     1141 aggtagcctg gctgctgcta ctgctgcaac caatggatac tttggagctg cctcgcccct
     1201 agctgccagt gccattctag ggacagagaa atccacagat ggatcaaagg atgtagttga
     1261 aatagcagtt ccagaaaact tagttggtgc aatacttggc aaaggaggga aaaccttagt
     1321 ggaataccag gagttgactg gtgcaaggat acagatctcc aaaaagggag aattcgtacc
     1381 tggcacaagg aatcggaagg taaccattac tggaacacca gctgcaacac aggctgctca
     1441 gtatttaatt acacagagga tcacatatga gcaaggagtt cgggctgcca atcctcagaa
     1501 agtgggttga gtgtccccat tatacgtcag agtgttttaa cccctccttt gccccatttg
     1561 gaagaaggat gtactgtact ttgcagaagt gaagtttttc tgttattaat atataattat
     1621 gcaaatgaat gcgactatgt tgacaatgtg tatatgtaaa taatatgtgt tttaccagat
     1681 gtttcataga attttttctt gatctgtttt gttctctata ctttgcttgt gtatatttgt
     1741 cagaggtgtt tctagtgtaa gatttaagcc tgccatttta ccagcattat tgtagtttaa
     1801 tgattgaatg tagacaggga tatgcgtata gttttcagta ttagttctag ataacactaa
     1861 attaactact gttaggttga gtatggtggg gtcagtgacc taaactggag tgaggccaaa
     1921 gcactgtcat gtatgtctta cttcctgctt agggcacaga gaagtaggaa acaatatttt
     1981 gaaaaataag ttttcaattt aaaatgatca aaaagcaata tagttgcata aaagcactgt
     2041 aaaatattta aaaggttaaa actgtggaaa attacattgg taagtttaca gatcaataaa
     2101 agcacctgtt ctccatctga actagacaat ggaaataatg ctgcatgctg gccagggccc
     2161 attcttcatc atttgtaagt tcaacaaaag ttctcacatg gagtcccacc tcttccgagg
     2221 tttgtacatt tgtttttaag cactgaattc actactgatc ccatcgcctg gccagtagaa
     2281 cagtcattac tccatgaaca tcctcactgt ttagacacat aactgtggta cagtgtattg
     2341 gaaattttat aaacaaaagt gaaagtgcca acacattatt gatagctgat aatgtttcat
     2401 tatctgcaac tgctggataa gtatgttgca ttttaagagc ttataattgt gtataatttg
     2461 ttaacactag caacctatta gtattgtgaa tgtagagttt actgtgaagc tatctgtgac
     2521 ttagctgtct gctccatgac ggagttcttg cagcatggcg ctagcagcca gtgcagtttc
     2581 taatactcgg taatttgcat gttttgtgga gcatttttat gtcaccaacc agacagtatt
     2641 tcctgcatgc ttatttagaa gaggcagttt atcttgagag gtagtgtgat ctacctttgt
     2701 caggcttttt gacaggtcat ttcagagtaa gcctttgttc ccaagaccca acaactgtca
     2761 ccctcttctg tacctctcct gagtgccaac tgtccaggcc atttgacaca ccatctgtta
     2821 acctctgagt ttgcccactc aaggccactc ataggggcat ccatccccag cacctcctca
     2881 tgctgtgcat gcagtcttaa attcaatgga caaaactaaa atgctggcta cctctggatc
     2941 atctggctga gcaactgaat tacaaaagag aattacttcc atctcaactt cagcccattg
     3001 gttacgtcca tcctagcaag ctaaatggca tcccagctgc tcctttctgt gcaaccaatt
     3061 aaagaacaat gagtgtgatg ctccatgtct gaatttcgtc cagcctctct ctgaactgtg
     3121 atctttgtcc tcatgaactt tcccttttgt tcattgaact atatggactc ttcatttcat
     3181 attgatttac tgtgcaattt acttttggac attgagaact tgaaattatt tcctgatccc
     3241 ttccccttcc actattaata attcatttct gtcaaactgt aagagtagga ctcatttttt
     3301 ttttttttta gtttttaaca ttggactgtt atttcattta gagttctcta tctctaaata
     3361 tttatttaga gaatgatttt caaagggaat gatatgcttg tttaaatgaa agagaaaagc
     3421 tgtagtaaac tgtgttaatt ggtaatgact atttatcgtc gatactctgt agctgtgtaa
     3481 gttttgacaa atagtgtatc tcgtggaatc agtggttagc attgccgcta ttatatttac
     3541 tcattttatc attataaatg tgcttagttc atcatgtagc atca
//
